| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT2241 | | DNA-damage-inducible protein F (NCBI ptt file) | 1.0 | BT1336 | | putative translation initiation inhibitor (NCBI ptt file) | 0.29 | 5 |
| Bacteroides ovatus ATCC 8483 | 0.91 | BACOVA_03104 | | MATE efflux family protein | 0.96 | BACOVA_00589 | | putative endoribonuclease L-PSP | 0.49 | 17 |
| Phocaeicola vulgatus CL09T03C04 | 0.77 | HMPREF1058_RS13880 | | MATE family efflux transporter | 0.71 | HMPREF1058_RS18400 | | RidA family protein | 0.58 | 3 |
| Phocaeicola dorei CL03T12C01 | 0.76 | ABI39_RS09485 | | MATE family efflux transporter | 0.70 | ABI39_RS14715 | | RidA family protein | 0.45 | 7 |
| Bacteroides stercoris CC31F | 0.75 | HMPREF1181_RS09420 | | MATE family efflux transporter | 0.88 | HMPREF1181_RS10885 | | RidA family protein | low | > 56 |
| Parabacteroides merdae CL09T00C40 | 0.68 | HMPREF1078_RS15090 | | MATE family efflux transporter | 0.63 | HMPREF1078_RS02020 | | RidA family protein | low | > 61 |
| Vibrio cholerae E7946 ATCC 55056 | 0.34 | CSW01_00480 | | MATE family efflux transporter | 0.52 | CSW01_12735 | | RidA family protein | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS22695 | | MATE family efflux transporter | 0.30 | ABZR87_RS05790 | | RidA family protein | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.32 | RR42_RS09395 | | multidrug transporter MatE | 0.35 | RR42_RS16710 | | endoribonuclease L-PSP | low | > 128 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_3770 | | MATE efflux family protein | 0.39 | HP15_306 | | YjgF-like protein | low | > 73 |
| Ralstonia solanacearum PSI07 | 0.31 | RPSI07_RS01180 | | MATE family efflux transporter | 0.29 | RPSI07_RS05465 | | RidA family protein | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.30 | QEN71_RS04895 | | MATE family efflux transporter | 0.42 | QEN71_RS41190 | | RidA family protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_0845 | | MATE efflux family protein (RefSeq) | 0.35 | Dshi_0720 | | Endoribonuclease L-PSP (RefSeq) | low | > 64 |
| Ralstonia solanacearum GMI1000 | 0.30 | RS_RS18520 | | MATE family efflux transporter | 0.31 | RS_RS23660 | | RidA family protein | — | — |
| Burkholderia phytofirmans PsJN | 0.30 | BPHYT_RS14080 | | multidrug transporter MatE | 0.32 | BPHYT_RS34350 | | endoribonuclease L-PSP | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_3364 | | putative efflux protein, MATE family | 0.44 | Psest_3818 | | endoribonuclease L-PSP, putative | low | > 67 |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_4384 | | Multi antimicrobial extrusion protein MatE | 0.49 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_4384 | | Multi antimicrobial extrusion protein MatE | 0.49 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.29 | H281DRAFT_04426 | | multidrug resistance protein, MATE family | 0.34 | H281DRAFT_03549 | | reactive intermediate/imine deaminase | low | > 103 |
| Shewanella amazonensis SB2B | 0.29 | Sama_3501 | | DNA-damage-inducible protein F (RefSeq) | 0.40 | Sama_0263 | | YjgF-like protein (RefSeq) | low | > 62 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_03010 | | XRE family transcriptional regulator | 0.47 | PS417_27835 | | endoribonuclease | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_1292 | | DNA-damage-inducible protein F | 0.47 | Pf1N1B4_2112 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.28 | PfGW456L13_40 | | DNA-damage-inducible protein F | 0.47 | PfGW456L13_779 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.28 | AO353_13735 | | MATE family efflux transporter | 0.47 | AO353_09285 | | reactive intermediate/imine deaminase | low | > 101 |
| Pseudomonas putida KT2440 | 0.28 | PP_0569 | | MATE efflux family protein | 0.47 | PP_5303 | | aminoacrylate/iminopropionate hydrolase/deaminase | 0.12 | 95 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_3500 | | DNA-damage-inducible protein F | 0.48 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 103 |
| Kangiella aquimarina DSM 16071 | 0.27 | B158DRAFT_0674 | | putative efflux protein, MATE family | 0.41 | B158DRAFT_0573 | | endoribonuclease L-PSP, putative | low | > 40 |
| Shewanella loihica PV-4 | 0.27 | Shew_0107 | | MATE efflux family protein (RefSeq) | 0.40 | Shew_3500 | | putative endoribonuclease L-PSP (RefSeq) | low | > 60 |
| Rahnella sp. WP5 | 0.27 | EX31_RS11850 | | MATE family efflux transporter DinF | 0.53 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 89 |
| Pantoea sp. MT58 | 0.27 | IAI47_17885 | | MATE family efflux transporter DinF | 0.55 | IAI47_16870 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 76 |
| Shewanella oneidensis MR-1 | 0.27 | SO4617 | dinF | DNA-damage-inducible protein F (NCBI ptt file) | 0.45 | SO1404 | | endoribonuclease L-PSP, putative (NCBI ptt file) | low | > 76 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_23000 | | MATE family efflux transporter DinF | 0.48 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS03090 | | MATE family efflux transporter | 0.47 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS03090 | | MATE family efflux transporter | 0.47 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Klebsiella michiganensis M5al | 0.26 | BWI76_RS01880 | | MATE family efflux transporter | 0.54 | BWI76_RS02985 | | reactive intermediate/imine deaminase | low | > 92 |
| Alteromonas macleodii MIT1002 | 0.26 | MIT1002_04023 | | DNA-damage-inducible protein F | 0.42 | MIT1002_00109 | | Putative reactive intermediate deaminase TdcF | low | > 70 |
| Pseudomonas fluorescens FW300-N2C3 | 0.26 | AO356_08140 | | MATE family efflux transporter | 0.48 | AO356_12475 | | reactive intermediate/imine deaminase | low | > 104 |
| Enterobacter sp. TBS_079 | 0.26 | MPMX20_00260 | | DNA damage-inducible protein F | 0.54 | MPMX20_00542 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.26 | EX28DRAFT_4268 | | putative efflux protein, MATE family | 0.53 | EX28DRAFT_3444 | | reactive intermediate/imine deaminase | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.26 | GFF1413 | | DNA-damage-inducible protein F | 0.55 | GFF928 | | Endoribonuclease L-PSP | low | > 78 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_05231 | | DNA damage-inducible protein F | 0.47 | PFR28_04425 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 88 |
| Escherichia coli BL21 | 0.26 | ECD_03916 | | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | 0.52 | ECD_04111 | | enamine/imine deaminase, reaction intermediate detoxification | low | > 60 |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_05215 | dinF | MATE family efflux transporter DinF | 0.52 | NOLOHH_04135 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 57 |
| Escherichia coli BW25113 | 0.26 | b4044 | dinF | DNA-damage-inducible SOS response protein (NCBI) | 0.52 | b4243 | yjgF | orf, hypothetical protein (VIMSS) | low | > 76 |
| Shewanella sp. ANA-3 | 0.26 | Shewana3_4001 | | MATE efflux family protein (RefSeq) | 0.45 | Shewana3_2971 | | putative endoribonuclease L-PSP (RefSeq) | low | > 73 |
| Escherichia coli ECRC62 | 0.26 | BNILDI_06305 | dinF | MATE family efflux transporter DinF | 0.52 | BNILDI_07375 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.26 | OHPLBJKB_03999 | | DNA damage-inducible protein F | 0.52 | OHPLBJKB_03791 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 73 |
| Rhodopseudomonas palustris CGA009 | 0.26 | TX73_004125 | | MATE family efflux transporter | 0.24 | TX73_018610 | | RidA family protein | low | > 86 |
| Escherichia fergusonii Becca | 0.25 | EFB2_04559 | | DNA damage-inducible protein F | 0.52 | EFB2_04290 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.25 | ECOLIN_RS23340 | | MATE family efflux transporter DinF | 0.52 | ECOLIN_RS24615 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 52 |
| Escherichia coli ECRC101 | 0.25 | OKFHMN_13060 | dinF | MATE family efflux transporter DinF | 0.52 | OKFHMN_11875 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli ECRC101 | 0.25 | MCAODC_03560 | dinF | MATE family efflux transporter DinF | 0.52 | MCAODC_02380 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli ECRC102 | 0.25 | NIAGMN_10810 | dinF | MATE family efflux transporter DinF | 0.52 | NIAGMN_09725 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli ECRC99 | 0.25 | KEDOAH_15100 | dinF | MATE family efflux transporter DinF | 0.52 | KEDOAH_16280 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli ECRC98 | 0.25 | JDDGAC_16685 | dinF | MATE family efflux transporter DinF | 0.52 | JDDGAC_15515 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli ECOR38 | 0.25 | HEPCGN_11580 | dinF | MATE family efflux transporter DinF | 0.52 | HEPCGN_10070 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS02425 | | MATE family efflux transporter | 0.27 | ABIE40_RS21405 | | RidA family protein | low | > 107 |
| Sphingomonas koreensis DSMZ 15582 | 0.23 | Ga0059261_1394 | | putative efflux protein, MATE family | 0.27 | Ga0059261_1670 | | Putative translation initiation inhibitor, yjgF family | low | > 68 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS00490 | | MATE family efflux transporter | 0.46 | ABZR86_RS11845 | | RidA family protein | low | > 74 |
| Sinorhizobium meliloti 1021 | 0.23 | SMc02244 | | transmembrane protein | 0.32 | SM_b21139 | | translation initiation inhibitors | low | > 103 |
| Agrobacterium fabrum C58 | 0.22 | Atu5428 | | DNA-damage-inducible protein F | 0.32 | Atu2498 | | hypothetical protein | low | > 89 |
| Pseudomonas sp. S08-1 | 0.21 | OH686_07530 | | MATE efflux family protein | 0.46 | OH686_13545 | | RidA/YER057c/UK114 superfamily protein | low | > 80 |
Not shown: 2 genomes with orthologs for BT2241 only; 38 genomes with orthologs for BT1336 only