Conservation of cofitness between b0399 and b0223 in Escherichia coli BW25113

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0399 phoB DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) (NCBI) 1.0 b0223 yafJ predicted amidotransfease (NCBI) 0.22 3
Escherichia coli Nissle 1917 1.00 ECOLIN_RS02410 phosphate response regulator transcription factor PhoB 0.99 ECOLIN_RS01755 class II glutamine amidotransferase low > 52
Escherichia coli ECRC99 1.00 KEDOAH_19420 phoB phosphate response regulator transcription factor PhoB 0.99 KEDOAH_18385 yafJ class II glutamine amidotransferase
Escherichia coli ECOR27 1.00 NOLOHH_01475 phoB phosphate response regulator transcription factor PhoB 1.00 NOLOHH_02140 yafJ Putative glutamine amidotransferase YafJ low > 57
Escherichia fergusonii Becca 1.00 EFB2_03658 Phosphate regulon transcriptional regulatory protein PhoB 1.00 EFB2_03794 Putative glutamine amidotransferase YafJ low > 86
Escherichia coli BL21 1.00 ECD_00347 response regulator in two-component regulatory system with PhoR 1.00 ECD_00218 type 2 glutamine amidotransferase family protein low > 60
Escherichia coli ECRC101 1.00 OKFHMN_08545 phoB phosphate response regulator transcription factor PhoB 0.99 OKFHMN_09770 yafJ class II glutamine amidotransferase
Escherichia coli ECRC101 1.00 MCAODC_27770 phoB phosphate response regulator transcription factor PhoB 0.99 MCAODC_00290 yafJ class II glutamine amidotransferase
Escherichia coli ECOR38 1.00 HEPCGN_07185 phoB phosphate response regulator transcription factor PhoB 1.00 HEPCGN_07875 yafJ Putative glutamine amidotransferase YafJ low > 85
Escherichia coli ECRC98 1.00 JDDGAC_12200 phoB phosphate response regulator transcription factor PhoB 0.99 JDDGAC_13395 yafJ class II glutamine amidotransferase
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03277 Phosphate regulon transcriptional regulatory protein PhoB 1.00 OHPLBJKB_03416 Putative glutamine amidotransferase YafJ low > 73
Escherichia coli ECRC102 1.00 NIAGMN_06600 phoB phosphate response regulator transcription factor PhoB 0.99 NIAGMN_07630 yafJ class II glutamine amidotransferase
Escherichia coli ECRC62 1.00 BNILDI_22890 phoB phosphate response regulator transcription factor PhoB 1.00 BNILDI_00335 yafJ Putative glutamine amidotransferase YafJ
Enterobacter asburiae PDN3 0.97 EX28DRAFT_2575 phosphate regulon transcriptional regulatory protein PhoB 0.95 EX28DRAFT_2666 Predicted glutamine amidotransferase low > 76
Enterobacter sp. TBS_079 0.97 MPMX20_00986 Phosphate regulon transcriptional regulatory protein PhoB 0.94 MPMX20_00912 Putative glutamine amidotransferase YafJ low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF4296 Phosphate regulon transcriptional regulatory protein PhoB (SphR) 0.95 GFF4102 Predicted glutamine amidotransferase low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS06230 DNA-binding response regulator 0.89 BWI76_RS05480 class II glutamine amidotransferase low > 92
Serratia liquefaciens MT49 0.93 IAI46_04775 phosphate response regulator transcription factor PhoB 0.86 IAI46_04345 class II glutamine amidotransferase low > 86
Pantoea sp. MT58 0.92 IAI47_14855 phosphate response regulator transcription factor PhoB 0.86 IAI47_15185 class II glutamine amidotransferase low > 76
Erwinia tracheiphila SCR3 0.92 LU632_RS18925 phoB phosphate response regulator transcription factor PhoB 0.88 LU632_RS01140 class II glutamine amidotransferase low > 74
Pectobacterium carotovorum WPP14 0.91 HER17_RS16040 phosphate response regulator transcription factor PhoB 0.85 HER17_RS04650 class II glutamine amidotransferase low > 75
Dickeya dianthicola 67-19 0.91 HGI48_RS05485 phosphate response regulator transcription factor PhoB 0.84 HGI48_RS16655 class II glutamine amidotransferase low > 71
Rahnella sp. WP5 0.91 EX31_RS22040 phosphate response regulator transcription factor PhoB 0.86 EX31_RS21015 class II glutamine amidotransferase low > 89
Dickeya dadantii 3937 0.91 DDA3937_RS05425 phosphate response regulator transcription factor PhoB 0.85 DDA3937_RS16585 class II glutamine amidotransferase low > 74
Dickeya dianthicola ME23 0.91 DZA65_RS05810 phosphate response regulator transcription factor PhoB 0.84 DZA65_RS17745 class II glutamine amidotransferase low > 75
Vibrio cholerae E7946 ATCC 55056 0.85 CSW01_03760 phosphate regulon transcriptional regulatory protein PhoB 0.73 CSW01_11360 class II glutamine amidotransferase low > 62
Shewanella amazonensis SB2B 0.79 Sama_1074 response regulator receiver protein (RefSeq) 0.67 Sama_1869 amidotransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.78 Shew_2749 two component transcriptional regulator (RefSeq) 0.67 Shew_2107 glutamine amidotransferase, class-II (RefSeq)
Shewanella oneidensis MR-1 0.77 SO1558 phoB phosphate regulon response regulator PhoB (NCBI ptt file) 0.68 SO2535 hypothetical amidotransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.77 Shewana3_2879 two component transcriptional regulator (RefSeq) 0.67 Shewana3_2322 glutamine amidotransferase, class-II (RefSeq) low > 73
Dechlorosoma suillum PS 0.63 Dsui_0863 phosphate regulon transcriptional regulatory protein PhoB 0.54 Dsui_1425 putative glutamine amidotransferase low > 51
Pseudomonas putida KT2440 0.62 PP_5320 two-component system DNA-binding transcriptional dual response regulator PhoB 0.57 PP_4581 putative amidotransferase low > 96
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_09855 phosphate regulon transcriptional regulatory protein PhoB 0.59 AO353_17960 glutamine amidotransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_5032 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.58 Psyr_1576 Glutamine amidotransferase, class-II low > 86
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2044 Phosphate regulon transcriptional regulatory protein PhoB (SphR) 0.59 Pf1N1B4_3359 Glutamine amidotransferase, class-II
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_4066 Phosphate regulon transcriptional regulatory protein PhoB (SphR) 0.59 Pf6N2E2_2711 Glutamine amidotransferase, class-II low > 103
Pseudomonas fluorescens SBW25 0.62 PFLU_RS29725 phosphate regulon transcriptional regulatory protein PhoB 0.59 PFLU_RS07540 class II glutamine amidotransferase low > 109
Pseudomonas sp. RS175 0.62 PFR28_04479 Phosphate regulon transcriptional regulatory protein PhoB 0.59 PFR28_00725 Putative glutamine amidotransferase YafJ low > 88
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_11000 phosphate regulon transcriptional regulatory protein PhoB 0.59 AO356_04350 glutamine amidotransferase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_5032 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.58 Psyr_1576 Glutamine amidotransferase, class-II low > 86
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS29725 phosphate regulon transcriptional regulatory protein PhoB 0.59 PFLU_RS07540 class II glutamine amidotransferase low > 109
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_762 Phosphate regulon transcriptional regulatory protein PhoB (SphR) 0.59 PfGW456L13_4482 Glutamine amidotransferase, class-II low > 87
Pseudomonas stutzeri RCH2 0.62 Psest_3845 phosphate regulon transcriptional regulatory protein PhoB 0.55 Psest_1849 Predicted glutamine amidotransferase low > 67
Pseudomonas simiae WCS417 0.62 PS417_28035 transcriptional regulator PhoB 0.59 PS417_07455 glutamine amidotransferase low > 88
Pseudomonas sp. S08-1 0.62 OH686_13465 phosphate regulon transcriptional regulatory protein PhoB 0.59 OH686_05255 Putative glutamine amidotransferase YafJ low > 80
Acinetobacter radioresistens SK82 0.62 MPMX26_02958 Phosphate regulon transcriptional regulatory protein PhoB 0.51 MPMX26_02412 Putative glutamine amidotransferase YafJ low > 36
Marinobacter adhaerens HP15 0.61 HP15_3354 two component transcriptional regulator, winged helix family 0.55 HP15_3871 glutamine amidotransferase class-II low > 73
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04416 two component transcriptional regulator, winged helix family 0.52 H281DRAFT_04266 glutamine amidotransferase low > 103
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS14120 chemotaxis protein CheY 0.50 BPHYT_RS16680 glutamine amidotransferase low > 109
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS04845 phosphate regulon transcriptional regulator PhoB 0.53 QEN71_RS26860 class II glutamine amidotransferase low > 153
Paraburkholderia graminis OAS925 0.60 ABIE53_002990 two-component system phosphate regulon response regulator PhoB 0.52 ABIE53_003506 putative glutamine amidotransferase low > 113
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS14075 phosphate regulon transcriptional regulator PhoB 0.50 ABZR87_RS07540 class II glutamine amidotransferase low > 80
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS13445 chemotaxis protein CheY 0.51 RR42_RS02595 glutamine amidotransferase low > 128
Ralstonia solanacearum GMI1000 0.59 RS_RS07695 phosphate regulon transcriptional regulatory protein PhoB 0.50 RS_RS02405 class II glutamine amidotransferase low > 80
Ralstonia solanacearum PSI07 0.59 RPSI07_RS15320 phosphate regulon transcriptional regulatory protein PhoB 0.50 RPSI07_RS21635 class II glutamine amidotransferase low > 81
Ralstonia solanacearum UW163 0.59 UW163_RS15435 phosphate regulon transcriptional regulatory protein PhoB 0.50 UW163_RS02010 class II glutamine amidotransferase
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02125 phosphate regulon transcriptional regulatory protein PhoB 0.50 RALBFv3_RS11575 class II glutamine amidotransferase low > 76
Castellaniella sp019104865 MT123 0.56 ABCV34_RS14470 phosphate regulon transcriptional regulator PhoB 0.49 ABCV34_RS06215 class II glutamine amidotransferase low > 48
Variovorax sp. OAS795 0.54 ABID97_RS14620 phosphate regulon transcriptional regulator PhoB 0.52 ABID97_RS04635 class II glutamine amidotransferase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF63 Phosphate regulon transcriptional regulatory protein PhoB (SphR) 0.50 GFF3024 Glutamine amidotransferase, class-II low > 90
Variovorax sp. SCN45 0.53 GFF1097 Phosphate regulon transcriptional regulatory protein PhoB (SphR) 0.49 GFF6320 Putative glutamine amidotransferase YafJ 0.37 118
Azospirillum sp. SherDot2 0.52 MPMX19_02587 Phosphate regulon transcriptional regulatory protein PhoB 0.66 MPMX19_00595 Putative glutamine amidotransferase YafJ low > 112
Azospirillum brasilense Sp245 0.51 AZOBR_RS01105 PhoB family transcriptional regulator 0.64 AZOBR_RS05605 glutamine amidotransferase low > 97
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS06960 chemotaxis protein CheY 0.52 HSERO_RS24040 glutamine amidotransferase low > 78
Rhizobium sp. OAE497 0.47 ABIE40_RS02310 phosphate regulon transcriptional regulator PhoB 0.10 ABIE40_RS01490 class II glutamine amidotransferase low > 107
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_1012 sphR two component transcriptional regulator, winged helix family 0.46 Synpcc7942_2184 hypothetical protein low > 38
Mycobacterium tuberculosis H37Rv 0.34 Rv0491 Two component sensory transduction protein RegX3 (transcriptional regulatory protein) (probably LuxR-family) 0.10 Rv1061 Conserved protein low > 58

Not shown: 32 genomes with orthologs for b0399 only; 0 genomes with orthologs for b0223 only