| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A1435 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | 1.0 | Rru_A1621 | | Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) | 0.68 | 15 |
| Sinorhizobium meliloti 1021 | 0.62 | SM_b20613 | | C4-dicarboxylate transport transcriptional regulator | 0.42 | SMc04235 | | tRNA-dihydrouridine synthase A | 0.46 | 83 |
| Agrobacterium fabrum C58 | 0.60 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | 0.44 | Atu1515 | | hypothetical protein | low | > 89 |
| Rhizobium sp. OAE497 | 0.59 | ABIE40_RS26335 | | sigma-54 dependent transcriptional regulator | 0.44 | ABIE40_RS10895 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 107 |
| Castellaniella sp019104865 MT123 | 0.57 | ABCV34_RS02725 | | sigma-54 dependent transcriptional regulator | 0.39 | ABCV34_RS04335 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 48 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.52 | A4249_RS04415 | | sigma-54 dependent transcriptional regulator | 0.46 | A4249_RS10515 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 48 |
| Azospirillum brasilense Sp245 | 0.51 | AZOBR_RS21130 | | Fis family transcriptional regulator | 0.50 | AZOBR_RS15935 | | tRNA-dihydrouridine synthase A | low | > 97 |
| Escherichia fergusonii Becca | 0.50 | EFB2_04538 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.46 | EFB2_04556 | | tRNA-dihydrouridine(20/20a) synthase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.50 | ECOLIN_RS23460 | | sigma-54 dependent transcriptional regulator | 0.46 | ECOLIN_RS23355 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 55 |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_4132 | | alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) | 0.47 | Psest_2706 | | tRNA dihydrouridine synthase A | low | > 67 |
| Azospirillum sp. SherDot2 | 0.49 | MPMX19_04251 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.52 | MPMX19_00670 | | tRNA-dihydrouridine(20/20a) synthase | low | > 112 |
| Pseudomonas syringae pv. syringae B728a | 0.49 | Psyr_3995 | | Helix-turn-helix, Fis-type | 0.48 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.49 | Psyr_3995 | | Helix-turn-helix, Fis-type | 0.48 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS16810 | | Fis family transcriptional regulator | 0.47 | HSERO_RS17905 | | tRNA-dihydrouridine synthase A | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.48 | RR42_RS01705 | | Fis family transcriptional regulator | 0.47 | RR42_RS12665 | | tRNA-dihydrouridine synthase A | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.48 | ABZR87_RS06635 | | sigma-54 dependent transcriptional regulator | 0.48 | ABZR87_RS11300 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 80 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_14355 | | C4-dicarboxylate transport transcriptional regulatory protein | 0.46 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_5487 | | Nitrogen regulation protein NR(I) | 0.46 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | low | > 103 |
| Pseudomonas putida KT2440 | 0.48 | PP_1401 | | C4-dicarboxylate transport transcriptional regulatory protein | 0.49 | PP_2169 | | tRNA-dihydrouridine synthase A | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_17800 | | C4-dicarboxylate ABC transporter | 0.46 | AO356_02170 | | tRNA-dihydrouridine synthase A | low | > 104 |
| Paraburkholderia graminis OAS925 | 0.47 | ABIE53_000648 | | two-component system C4-dicarboxylate transport response regulator DctD | 0.43 | ABIE53_001975 | | tRNA-dihydrouridine synthase A | low | > 113 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_401 | | C4-dicarboxylate transport transcriptional regulatory protein | 0.42 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | low | > 87 |
| Vibrio cholerae E7946 ATCC 55056 | 0.47 | CSW01_09635 | | sigma-54-dependent Fis family transcriptional regulator | 0.49 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 62 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_16265 | | Fis family transcriptional regulator | 0.45 | AO353_00295 | | tRNA-dihydrouridine synthase A | low | > 101 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_03462 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.45 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | low | > 88 |
| Ralstonia solanacearum GMI1000 | 0.47 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | 0.48 | RS_RS06510 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 80 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_05535 | | Fis family transcriptional regulator | 0.47 | PS417_07740 | | tRNA-dihydrouridine synthase A | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1666 | | C4-dicarboxylate transport transcriptional regulatory protein | 0.45 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | low | > 87 |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS22520 | | sigma-54-dependent Fis family transcriptional regulator | 0.48 | RPSI07_RS17630 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 81 |
| Marinobacter adhaerens HP15 | 0.47 | HP15_725 | | two component, sigma54 specific, transcriptional regulator, Fis family | 0.50 | HP15_2240 | | tRNA-dihydrouridine synthase, TIM-barrel, YjbN | low | > 73 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_02037 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | 0.44 | H281DRAFT_00766 | | tRNA-U16,U17-dihydrouridine synthase | low | > 103 |
| Ralstonia solanacearum IBSBF1503 | 0.47 | RALBFv3_RS10795 | | sigma-54-dependent Fis family transcriptional regulator | 0.48 | RALBFv3_RS15730 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.47 | UW163_RS02785 | | sigma-54-dependent Fis family transcriptional regulator | 0.48 | UW163_RS13175 | | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS05620 | | sigma-54-dependent Fis family transcriptional regulator | 0.47 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS05620 | | sigma-54-dependent Fis family transcriptional regulator | 0.47 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 109 |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS02520 | | Fis family transcriptional regulator | 0.45 | BPHYT_RS08700 | | tRNA-dihydrouridine synthase A | low | > 109 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_1412 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | 0.51 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.46 | SO3138 | dctD | C4-dicarboxylate transport transcriptional regulatory protein (NCBI ptt file) | 0.51 | SO3912 | | TIM-barrel protein, yjbN family (NCBI ptt file) | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS01375 | | sigma-54 dependent transcriptional regulator | 0.46 | QEN71_RS22650 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 153 |
| Shewanella loihica PV-4 | 0.45 | Shew_1442 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | 0.49 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.45 | Sama_2213 | | response regulator receiver protein (RefSeq) | 0.50 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.23 | 45 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS26605 | | sigma-54 dependent transcriptional regulator | 0.46 | ABID97_RS13915 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 91 |
| Variovorax sp. SCN45 | 0.43 | GFF1691 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | 0.43 | GFF928 | | tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) | low | > 127 |
| Dinoroseobacter shibae DFL-12 | 0.41 | Dshi_1196 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.48 | Dshi_2512 | | TIM-barrel protein, yjbN family (RefSeq) | low | > 64 |
| Rhodanobacter denitrificans FW104-10B01 | 0.33 | LRK54_RS12105 | | sigma-54 dependent transcriptional regulator | 0.49 | LRK54_RS05995 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS11840 | | sigma-54 dependent transcriptional regulator | 0.49 | LRK55_RS05750 | | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c13440 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.46 | PGA1_c19230 | | tRNA-dihydrouridine synthase A | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.32 | ABZR86_RS04010 | | sigma-54 dependent transcriptional regulator | 0.49 | ABZR86_RS18350 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 74 |
Not shown: 5 genomes with orthologs for Rru_A1435 only; 36 genomes with orthologs for Rru_A1621 only