| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 100 | 100 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 100 | 100 |
| o | Pseudomonas sp. DMC3 | GFF1005 | | Phytochrome-like protein cph1 | cofit | 74 | 100 |
| o | Pseudomonas simiae WCS417 | PS417_23325 | | histidine kinase | insig. | 74 | 99 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS25130 | | GAF domain-containing protein | insig. | 73 | 100 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS25130 | | GAF domain-containing protein | sig. | 73 | 100 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04813 | | Phytochrome-like protein cph1 | cofit | 74 | 99 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3852 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | sig. | 71 | 100 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_09865 | | histidine kinase | sig. | 70 | 100 |
| o | Pseudomonas sp. RS175 | PFR28_04918 | | Phytochrome-like protein cph1 | insig. | 71 | 100 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 51 | 97 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 51 | 97 |
| o | Rhodopseudomonas palustris CGA009 | TX73_015620 | | ATP-binding protein | insig. | 35 | 98 |
| o | Azospirillum sp. SherDot2 | MPMX19_04272 | | Phytochrome-like protein cph1 | insig. | 35 | 98 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS06325 | | ATPase | strong | 37 | 100 |
| o | Pseudomonas stutzeri RCH2 | Psest_4345 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 36 | 98 |
| o | Synechocystis sp000284455 PCC 6803 | SGL_RS14030 | | ATP-binding protein | cofit | 34 | 96 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS08760 | | histidine kinase | strong | 32 | 98 |
| | Rhodopseudomonas palustris CGA009 | TX73_015615 | | ATP-binding protein | insig. | 34 | 98 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS30860 | | sensor histidine kinase | strong | 35 | 98 |
| | Agrobacterium fabrum C58 | Atu1990 | | bacteriophytochrome protein | insig. | 34 | 98 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01748 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 34 | 100 |
| | Pseudomonas sp. BP01 | JOY50_RS10835 | | ATP-binding protein | insig. | 34 | 98 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS10565 | | ATP-binding protein | cofit | 34 | 98 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS03395 | | ATP-binding protein | strong | 32 | 98 |
| | Pseudomonas putida KT2440 | PP_2356 | | putative Phytochrome family protein | strong | 34 | 98 |
| o | Variovorax sp. SCN45 | GFF651 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 33 | 98 |
| | Rhodopseudomonas palustris CGA009 | TX73_000630 | | ATP-binding protein | insig. | 33 | 99 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS12460 | | light-regulated signal transduction histidine kinase | insig. | 34 | 99 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_21205 | | bacteriophytochrome BphP | insig. | 33 | 96 |
| | Variovorax sp. SCN45 | GFF1412 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 32 | 96 |
| o | Alteromonas macleodii MIT1002 | MIT1002_02965 | | Phytochrome-like protein cph1 | insig. | 28 | 98 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS02225 | | ATP-binding protein | strong | 32 | 96 |
| o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS15480 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 32 | 91 |
| | Alteromonas macleodii MIT1002 | MIT1002_03619 | | Phytochrome-like protein cph1 | insig. | 29 | 98 |
| | Agrobacterium fabrum C58 | Atu2165 | | bacteriophytochrome protein | insig. | 34 | 72 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30160 | | chemotaxis protein CheY | insig. | 35 | 71 |
| | Pseudomonas putida KT2440 | PP_3364 | | Response regulator | insig. | 36 | 72 |
| o | Xanthobacter sp. DMC5 | GFF4286 | | Phytochrome-like protein cph1 | insig. | 33 | 72 |
| | Rhizobium sp. OAE497 | ABIE40_RS14515 | | HWE histidine kinase domain-containing protein | insig. | 33 | 73 |
| | Rhizobium sp. OAE497 | ABIE40_RS26950 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 29 | 95 |
| | Sphingobium sp. HT1-2 | GFF5140 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 33 | 76 |
| | Pseudomonas sp. BP01 | JOY50_RS14150 | | HWE histidine kinase domain-containing protein | insig. | 35 | 72 |
| | Sphingobium sp. HT1-2 | GFF650 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 32 | 73 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c28680 | | putative bacteriophytochrome | insig. | 31 | 73 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_05925 | | hypothetical protein | cofit | 27 | 99 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_08315 | | PAS sensor protein | sig. | 33 | 66 |
| | Lysobacter sp. OAE881 | ABIE51_RS17880 | | GAF domain-containing protein | insig. | 35 | 68 |
| | Azospirillum sp. SherDot2 | MPMX19_01598 | | hypothetical protein | insig. | 34 | 71 |
| | Rhodopseudomonas palustris CGA009 | TX73_005095 | | HWE histidine kinase domain-containing protein | insig. | 34 | 72 |
| | Bosea sp. OAE506 | ABIE41_RS08275 | | HWE histidine kinase domain-containing protein | insig. | 33 | 71 |
| | Rhodopseudomonas palustris CGA009 | TX73_007660 | | GAF domain-containing protein | cofit | 28 | 97 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.5288.1 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 28 | 73 |
| | Rhodospirillum rubrum S1H | Rru_A2235 | | Multi-sensor Signal Transduction Histidine Kinase (NCBI) | strong | 32 | 69 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS16825 | | hypothetical protein | insig. | 30 | 67 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00090 | | histidine kinase | insig. | 34 | 34 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS01570 | | hypothetical protein | insig. | 32 | 36 |
| | Azospirillum sp. SherDot2 | MPMX19_06088 | | Sensor histidine kinase RcsC | insig. | 36 | 31 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS05135 | | GAF domain-containing protein | sig. | 33 | 32 |
| | Dechlorosoma suillum PS | Dsui_2251 | | signal transduction histidine kinase | cofit | 35 | 34 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_01625 | | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein | insig. | 34 | 33 |
| | Variovorax sp. OAS795 | ABID97_RS26170 | | ATP-binding protein | insig. | 33 | 33 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_04170 | | two-component system sensor histidine kinase GacS | cofit | 34 | 32 |
| | Enterobacter sp. TBS_079 | MPMX20_03655 | | Signal transduction histidine-protein kinase BarA | strong | 33 | 34 |
| | Rhizobium sp. OAE497 | ABIE40_RS13880 | | response regulator | insig. | 33 | 32 |
| | Pseudomonas sp. S08-1 | OH686_18945 | | Signal transduction histidine-protein kinase BarA | strong | 35 | 32 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS19230 | | CheR family methyltransferase | insig. | 35 | 34 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_12415 | | two-component sensor histidine kinase BarA | insig. | 33 | 33 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS15510 | | ATP-binding protein | cofit | 34 | 30 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS17385 | | PAS domain S-box protein | insig. | 35 | 32 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2866 | | Uncharacterized domain of BarA-like signal transduction histidine kinases | strong | 33 | 34 |
| | Methanococcus maripaludis S2 | MMP_RS06715 | | cache domain-containing protein | strong | 26 | 48 |
| | Klebsiella michiganensis M5al | BWI76_RS22815 | | hybrid sensor histidine kinase/response regulator | strong | 34 | 34 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4839 | | BarA sensory histidine kinase (= VarS = GacS) | strong | 33 | 34 |
| | Escherichia coli BL21 | ECD_02631 | | hybrid sensory histidine kinase, in two-component regulatory system with UvrY | cofit | 33 | 34 |
| | Escherichia coli ECOR27 | NOLOHH_12115 | barA | two-component sensor histidine kinase BarA | cofit | 33 | 34 |
| | Escherichia coli ECOR38 | HEPCGN_19490 | barA | two-component sensor histidine kinase BarA | cofit | 33 | 34 |
| | Escherichia coli ECRC100 | OKFHMN_20240 | barA | two-component sensor histidine kinase BarA | cofit | 33 | 34 |
| | Escherichia coli ECRC101 | MCAODC_10765 | barA | two-component sensor histidine kinase BarA | insig. | 33 | 34 |
| | Escherichia coli ECRC102 | NIAGMN_18010 | barA | two-component sensor histidine kinase BarA | cofit | 33 | 34 |
| | Escherichia coli ECRC62 | BNILDI_10620 | barA | two-component sensor histidine kinase BarA | cofit | 33 | 34 |
| | Escherichia coli ECRC98 | JDDGAC_23905 | barA | two-component sensor histidine kinase BarA | insig. | 33 | 34 |
| | Escherichia coli ECRC99 | KEDOAH_07890 | barA | two-component sensor histidine kinase BarA | no data | 33 | 34 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00945 | | Signal transduction histidine-protein kinase BarA | cofit | 33 | 34 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS15525 | | two-component sensor histidine kinase BarA | sig. | 33 | 34 |
| | Escherichia coli BW25113 | b2786 | barA | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | sig. | 33 | 34 |
| | Agrobacterium fabrum C58 | Atu2332 | | two component sensor kinase/response regulator hybrid | insig. | 33 | 32 |
| | Methanococcus maripaludis JJ | MMJJ_RS07640 | | cache domain-containing protein | strong | 33 | 30 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_03345 | | two-component sensor histidine kinase BarA | strong | 34 | 34 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2483 | | multi-sensor hybrid histidine kinase (RefSeq) | insig. | 33 | 34 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS05435 | | hybrid sensor histidine kinase/response regulator | insig. | 32 | 33 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS15350 | | PAS domain-containing sensor histidine kinase | insig. | 31 | 33 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS08215 | | PAS domain-containing protein | cofit | 31 | 32 |
| | Marinobacter adhaerens HP15 | HP15_3355 | | multi-sensor signal transduction histidine kinase | strong | 35 | 32 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02823 | | PAS/PAC sensor hybrid histidine kinase | insig. | 34 | 34 |
| | Shewanella amazonensis SB2B | Sama_2952 | | sensory box histidine kinase/response regulator (RefSeq) | strong | 33 | 34 |
| | Sinorhizobium meliloti 1021 | SMc01128 | | sensor histidine kinase transmembrane protein | insig. | 31 | 38 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS26320 | | ATPase | insig. | 34 | 34 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS12335 | | hypothetical protein | insig. | 32 | 30 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06202 | | PAS domain S-box-containing protein | insig. | 34 | 34 |