Homologs of PP_4740 from Pseudomonas putida KT2440

Type I restriction enzyme EcoAI R protein
SEED: Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)
KEGG: type I restriction enzyme, R subunit

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4740 Type I restriction enzyme EcoAI R protein insig. 100 100
o Methylophilus sp. DMC18 GFF1952 hypothetical protein cofit 74 99
o Escherichia coli ECOR38 HEPCGN_09450 hsdR DEAD/DEAH box helicase cofit 61 100
o Escherichia coli ECRC100 OKFHMN_11410 hsdR DEAD/DEAH box helicase insig. 61 100
o Escherichia coli ECRC101 MCAODC_01925 hsdR DEAD/DEAH box helicase insig. 61 100
o Escherichia coli ECRC102 NIAGMN_09260 hsdR DEAD/DEAH box helicase insig. 61 100
o Escherichia coli ECRC98 JDDGAC_15005 hsdR DEAD/DEAH box helicase cofit 61 100
o Escherichia coli ECRC99 KEDOAH_16735 hsdR DEAD/DEAH box helicase no data 61 100
o Rhodanobacter sp. FW510-T8 OKGIIK_13985 Restriction endonuclease cofit 59 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS01075 DEAD/DEAH box helicase family protein insig. 59 99
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0384 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases insig. 58 100
o Castellaniella sp019104865 MT123 ABCV34_RS05460 DEAD/DEAH box helicase family protein insig. 39 100
  Shewanella oneidensis MR-1 SO4267 hsdR-2 type I restriction-modification system, R subunit (NCBI ptt file) insig. 28 65
  Escherichia coli BW25113 b4350 hsdR endonuclease R (RefSeq) insig. 28 61
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1002 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) insig. 28 68
  Escherichia coli BL21 ECD_04216 endonuclease R Type I restriction enzyme insig. 28 61
  Pantoea sp. MT58 IAI47_16555 type I restriction-modification system endonuclease insig. 28 61
  Paraburkholderia graminis OAS925 ABIE53_005410 type I restriction enzyme R subunit insig. 28 69
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0422 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases insig. 28 67
  Pseudomonas sp. RS175 PFR28_03895 hypothetical protein insig. 28 67
  Shewanella sp. ANA-3 Shewana3_2963 hsdR type I restriction enzyme EcoKI subunit R (RefSeq) insig. 28 66
  Dickeya dianthicola 67-19 HGI48_RS21705 DEAD/DEAH box helicase family protein insig. 27 66
  Shewanella sp. ANA-3 Shewana3_2026 type III restriction enzyme, res subunit (RefSeq) insig. 28 60
  Alteromonas macleodii MIT1002 MIT1002_03395 Type-1 restriction enzyme R protein insig. 26 61
  Pseudomonas stutzeri RCH2 Psest_1100 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases insig. 28 59
  Serratia liquefaciens MT49 IAI46_02405 DEAD/DEAH box helicase family protein insig. 26 66
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS07505 DEAD/DEAH box helicase family protein insig. 26 66
  Bacteroides thetaiotaomicron VPI-5482 BT4517 Type I restriction enzyme EcoKI R protein (NCBI ptt file) insig. 26 66
  Bacteroides stercoris CC31F HMPREF1181_RS13645 DEAD/DEAH box helicase family protein insig. 25 68
  Phocaeicola dorei CL03T12C01 ABI39_RS21435 DEAD/DEAH box helicase family protein insig. 26 66
  Ralstonia solanacearum PSI07 RPSI07_RS08090 restriction endonuclease subunit R insig. 25 59
  Ralstonia solanacearum GMI1000 RS_RS17010 restriction endonuclease subunit R insig. 24 59
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS09180 restriction endonuclease subunit R insig. 26 60
  Shewanella oneidensis MR-1 SO0368 helicase (NCBI ptt file) insig. 27 46
  Bifidobacterium breve UCC2003 BBR_RS10690 DUF3427 domain-containing protein cofit 25 46
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3106 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) insig. 26 34
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3752 ATP-dependent RNA helicase YejH insig. 26 50
  Shewanella loihica PV-4 Shew_1532 type III restriction enzyme, res subunit (RefSeq) insig. 27 50
  Dinoroseobacter shibae DFL-12 Dshi_0992 type III restriction protein res subunit (RefSeq) cofit 25 46
  Serratia liquefaciens MT49 IAI46_17350 DEAD/DEAH box helicase family protein insig. 23 50
  Erwinia tracheiphila SCR3 LU632_RS17600 DEAD/DEAH box helicase insig. 25 50
  Erwinia amylovora T8 OLJFJH_11705 ATP-dependent helicase insig. 24 50
  Escherichia fergusonii Becca EFB2_01672 Putative DNA repair helicase RadD insig. 25 50
  Escherichia coli Nissle 1917 ECOLIN_RS12765 DEAD/DEAH box helicase insig. 25 50
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01525 Putative DNA repair helicase RadD insig. 25 50
  Fusobacterium nucleatum SB010 HUW76_10085 DUF3427 domain-containing protein cofit 30 24
  Escherichia coli BL21 ECD_02114 putative ATP-dependent DNA or RNA helicase sig. 25 50
  Escherichia coli BW25113 b2184 yejH DNA damage response helicase (yejH or radD) (from data) strong 25 50
  Escherichia coli ECOR38 HEPCGN_22620 radD Putative DNA repair helicase RadD cofit 24 50
  Escherichia coli ECOR27 NOLOHH_14930 radD Putative DNA repair helicase RadD cofit 24 50
  Escherichia coli ECRC62 BNILDI_13850 radD Putative DNA repair helicase RadD insig. 24 50
  Vibrio cholerae E7946 ATCC 55056 CSW01_04190 DEAD/DEAH box helicase insig. 24 47
  Pantoea sp. MT58 IAI47_06580 DEAD/DEAH box helicase insig. 24 50
  Escherichia coli ECRC100 OKFHMN_23355 radD Putative DNA repair helicase RadD cofit 25 50
  Escherichia coli ECRC101 MCAODC_14405 radD Putative DNA repair helicase RadD insig. 25 50
  Escherichia coli ECRC102 NIAGMN_21120 radD Putative DNA repair helicase RadD insig. 25 50
  Escherichia coli ECRC98 JDDGAC_27315 radD Putative DNA repair helicase RadD cofit 25 50
  Escherichia coli ECRC99 KEDOAH_04830 radD Putative DNA repair helicase RadD no data 25 50
  Dickeya dadantii 3937 DDA3937_RS09150 DEAD/DEAH box helicase insig. 24 50
  Shewanella oneidensis MR-1 SO1408 helicase, putative (NCBI ptt file) insig. 24 55
  Shewanella oneidensis MR-1 SO2744 DNA damage response helicase (yejH or radD) (from data) strong 24 50
  Pectobacterium carotovorum WPP14 HER17_RS12960 DEAD/DEAH box helicase family protein insig. 23 51
  Rahnella sp. WP5 EX31_RS19200 DEAD/DEAH box helicase insig. 24 50
  Vibrio cholerae E7946 ATCC 55056 CSW01_08225 ATP-dependent helicase insig. 22 56
  Shewanella sp. ANA-3 Shewana3_2524 type III restriction enzyme, res subunit (RefSeq) insig. 24 50
  Klebsiella michiganensis M5al BWI76_RS19815 ATP-dependent helicase insig. 25 50
  Marinobacter adhaerens HP15 HP15_2832 DNA damage response helicase (yejH or radD) (from data) sig. 23 50
  Enterobacter sp. TBS_079 MPMX20_03150 Putative DNA repair helicase RadD insig. 24 50
  Enterobacter asburiae PDN3 EX28DRAFT_0377 DNA or RNA helicases of superfamily II insig. 24 50
  Cellulophaga baltica 18 M666_RS16900 DEAD/DEAH box helicase family protein insig. 24 45
  Magnetospirillum magneticum AMB-1 AMB_RS01810 DNA helicase insig. 23 48
  Cellulophaga baltica 18 M666_RS16985 DEAD/DEAH box helicase insig. 22 60
  Dickeya dianthicola ME23 DZA65_RS09490 DEAD/DEAH box helicase insig. 24 50
  Dickeya dianthicola 67-19 HGI48_RS09190 DEAD/DEAH box helicase insig. 24 50
  Phocaeicola dorei CL03T12C01 ABI39_RS12105 DEAD/DEAH box helicase insig. 25 49
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS05380 HsdR family type I site-specific deoxyribonuclease insig. 24 37
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16220 DEAD/DEAH box helicase insig. 25 49
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18545 DEAD/DEAH box helicase family protein insig. 24 47
  Phocaeicola dorei CL03T12C01 ABI39_RS14855 DEAD/DEAH box helicase insig. 24 47
  Phocaeicola dorei CL03T12C01 ABI39_RS16865 DEAD/DEAH box helicase insig. 24 47
  Bacteroides ovatus ATCC 8483 BACOVA_05330 type I site-specific deoxyribonuclease, HsdR family insig. 26 24
  Phocaeicola dorei CL03T12C01 ABI39_RS20720 DEAD/DEAH box helicase insig. 23 46
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS0119825 DEAD/DEAH box helicase strong 23 43
  Shewanella amazonensis SB2B Sama_2080 DNA damage response helicase (yejH or radD) (from data) sig. 23 47
  Xanthobacter sp. DMC5 GFF2200 hypothetical protein insig. 24 54
  Bacteroides thetaiotaomicron VPI-5482 BT4535 Type I restriction enzyme EcoR124II R protein (NCBI ptt file) cofit 26 24
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS03160 type I restriction endonuclease subunit R insig. 25 24
  Synechococcus elongatus PCC 7942 Synpcc7942_0725 DEAD/DEAH box helicase-like insig. 25 26
  Rhodanobacter sp. FW510-T8 OKGIIK_06705 Type I restriction enzyme endonuclease subunit cofit 22 38
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02139 type I restriction enzyme, R subunit insig. 25 39
  Fusobacterium nucleatum SB010 HUW76_08985 type I restriction endonuclease subunit R strong 25 28
  Phocaeicola dorei CL03T12C01 ABI39_RS11135 DEAD/DEAH box helicase sig. 24 34
  Castellaniella sp019104865 MT123 ABCV34_RS11910 type I restriction endonuclease subunit R insig. 25 39
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1735.1 putative; ORF located using Glimmer/Genemark insig. 63 4
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03500 DEAD/DEAH box helicase insig. 22 51
  Vibrio cholerae E7946 ATCC 55056 CSW01_08855 type I restriction endonuclease subunit R insig. 24 28
  Herbaspirillum seropedicae SmR1 HSERO_RS22780 DEAD/DEAH box helicase insig. 26 40
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.611.1 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) insig. 25 23
  Phaeobacter inhibens DSM 17395 PGA1_c30690 putative type I restriction-modification system, R subunit insig. 26 24
  Alteromonas macleodii MIT1002 MIT1002_03210 Type-1 restriction enzyme R protein insig. 23 24