Homologs of PP_4553 from Pseudomonas putida KT2440

RNA polymerase sigma-70 factor, ECF subfamily
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

97 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4553 RNA polymerase sigma-70 factor, ECF subfamily insig. 100 100
o Pseudomonas sp. BP01 JOY50_RS01330 RNA polymerase sigma factor insig. 92 100
o Pseudomonas fluorescens FW300-N2E3 AO353_03200 RNA polymerase subunit sigma-24 insig. 72 100
o Pseudomonas sp. SVBP6 COO64_RS22035 RNA polymerase sigma factor insig. 77 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3399 RNA polymerase sigma-70 factor, ECF subfamily insig. 73 100
o Pseudomonas sp. DMC3 GFF5258 hypothetical protein cofit 71 100
o Pseudomonas fluorescens FW300-N2C3 AO356_05020 RNA polymerase subunit sigma-24 insig. 72 100
o Pseudomonas sp. RS175 PFR28_00603 hypothetical protein insig. 71 100
o Pseudomonas orientalis W4I3 QF045_RS24050 RNA polymerase sigma factor insig. 69 98
o Pseudomonas fluorescens SBW25 PFLU_RS23540 RNA polymerase sigma factor insig. 69 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS23540 RNA polymerase sigma factor insig. 69 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2854 RNA polymerase sigma-70 factor, ECF subfamily insig. 71 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04525 hypothetical protein cofit 67 99
o Pseudomonas simiae WCS417 PS417_21945 RNA polymerase subunit sigma-24 insig. 69 100
o Pseudomonas stutzeri RCH2 Psest_4133 RNA polymerase sigma factor, sigma-70 family sig. 66 99
o Pseudomonas aeruginosa MRSN321 DY961_RS19105 RNA polymerase sigma factor insig. 67 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS53230 RNA polymerase sigma factor insig. 67 100
o Pseudomonas aeruginosa PA14 IKLFDK_06430 RNA polymerase subunit sigma-24 insig. 67 100
o Pseudomonas sp. S08-1 OH686_16765 RNA polymerase ECF-type sigma factor cofit 66 98
o Pseudomonas segetis P6 ACVTMO_RS18060 RNA polymerase sigma factor insig. 63 100
o Rhizobium sp. OAE497 ABIE40_RS05880 RNA polymerase sigma factor insig. 57 98
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1935 RNA polymerase sigma-70 factor, ECF subfamily insig. 76 64
  Rhizobium sp. OAE497 ABIE40_RS18175 RNA polymerase sigma factor cofit 46 99
o Rhodanobacter denitrificans MT42 LRK55_RS01915 RNA polymerase sigma factor cofit 49 99
o Variovorax sp. SCN45 GFF3935 RNA polymerase ECF-type sigma factor insig. 46 97
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3970 Predicted RNA polymerase sigma factor containing a TPR repeat domain insig. 46 99
o Cupriavidus basilensis FW507-4G11 RR42_RS26775 RNA polymerase subunit sigma-24 insig. 46 96
  Rhizobium sp. OAE497 ABIE40_RS13680 RNA polymerase sigma factor insig. 45 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02165 RNA polymerase sigma factor insig. 48 99
o Lysobacter sp. OAE881 ABIE51_RS14880 RNA polymerase sigma factor insig. 47 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF454 RNA polymerase sigma-70 factor, ECF subfamily insig. 47 98
o Xanthobacter sp. DMC5 GFF549 hypothetical protein insig. 46 96
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19755 RNA polymerase sigma factor insig. 48 99
o Rhodanobacter sp. FW510-T8 OKGIIK_09210 RNA polymerase subunit sigma-24 insig. 48 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS21130 RNA polymerase sigma factor insig. 49 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS16225 RNA polymerase sigma factor insig. 45 96
o Acidovorax sp. GW101-3H11 Ac3H11_5010 RNA polymerase sigma-70 factor, ECF subfamily insig. 45 96
o Burkholderia phytofirmans PsJN BPHYT_RS35225 RNA polymerase subunit sigma-24 insig. 45 99
o Sinorhizobium meliloti 1021 SMc01150 hypothetical protein insig. 47 95
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07860 RNA polymerase sigma factor insig. 47 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03679 RNA polymerase, sigma subunit, ECF family insig. 46 99
o Variovorax sp. OAS795 ABID97_RS08675 RNA polymerase sigma factor insig. 46 96
o Paraburkholderia graminis OAS925 ABIE53_004579 RNA polymerase sigma factor (sigma-70 family) insig. 47 96
o Ralstonia solanacearum GMI1000 RS_RS20165 RNA polymerase subunit sigma-24 insig. 47 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4799.1 RNA polymerase sigma-70 factor, ECF subfamily insig. 45 97
o Rhodopseudomonas palustris CGA009 TX73_005700 RNA polymerase sigma factor insig. 47 95
  Burkholderia phytofirmans PsJN BPHYT_RS31175 RNA polymerase sigma70 factor insig. 42 99
  Caulobacter crescentus NA1000 CCNA_01390 RNA polymerase sigma factor insig. 47 90
  Caulobacter crescentus NA1000 Δfur CCNA_01390 RNA polymerase sigma factor insig. 47 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS33360 sigma factor insig. 43 89
  Variovorax sp. SCN45 GFF4791 RNA polymerase ECF-type sigma factor insig. 41 96
  Variovorax sp. OAS795 ABID97_RS20345 DUF6596 domain-containing protein insig. 41 88
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4295 Predicted RNA polymerase sigma factor containing a TPR repeat domain insig. 33 100
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS15535 DNA-directed RNA polymerase sigma-70 factor insig. 41 92
o Bosea sp. OAE506 ABIE41_RS09620 DUF6596 domain-containing protein insig. 42 87
  Rhodanobacter denitrificans MT42 LRK55_RS15255 sigma factor insig. 41 92
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12320 RNA polymerase sigma factor insig. 33 96
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4599 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 98
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1936 RNA polymerase sigma-70 factor, ECF subfamily insig. 66 36
  Caulobacter crescentus NA1000 CCNA_00393 RNA polymerase sigma factor insig. 38 76
  Caulobacter crescentus NA1000 Δfur CCNA_00393 RNA polymerase sigma factor cofit 38 76
  Burkholderia phytofirmans PsJN BPHYT_RS11635 RNA polymerase subunit sigma-24 insig. 29 60
  Paraburkholderia sabiae LMG 24235 QEN71_RS31540 RNA polymerase sigma-70 factor insig. 32 40
  Lysobacter sp. OAE881 ABIE51_RS11095 RNA polymerase sigma-70 factor insig. 32 38
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS15060 RNA polymerase sigma factor SigJ insig. 29 53
  Rhodanobacter denitrificans MT42 LRK55_RS14775 RNA polymerase sigma factor SigJ insig. 29 53
  Rhizobium sp. OAE497 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor insig. 28 38
  Variovorax sp. OAS795 ABID97_RS02030 RNA polymerase sigma-70 factor insig. 28 40
  Paraburkholderia graminis OAS925 ABIE53_004797 RNA polymerase sigma-70 factor (ECF subfamily) insig. 28 62
  Pantoea sp. MT58 IAI47_19735 sigma-70 family RNA polymerase sigma factor insig. 28 40
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08045 sigma-70 family RNA polymerase sigma factor cofit 28 40
  Rhodanobacter sp. FW510-T8 OKGIIK_03820 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 41
  Marinobacter adhaerens HP15 HP15_950 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 27 38
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 26 39
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 26 39
  Variovorax sp. SCN45 GFF5440 RNA polymerase ECF-type sigma factor insig. 28 42
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 33 25
  Pseudomonas segetis P6 ACVTMO_RS06730 sigma-70 family RNA polymerase sigma factor insig. 38 16
  Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 27 40
  Pseudomonas syringae pv. syringae B728a Psyr_0362 Sigma-70 region 2 insig. 38 19
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0362 Sigma-70 region 2 insig. 38 19
  Rahnella sp. WP5 EX31_RS18905 sigma-70 family RNA polymerase sigma factor insig. 28 38
  Pseudomonas orientalis W4I3 QF045_RS00535 sigma-70 family RNA polymerase sigma factor cofit 32 25
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01268 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 38
  Pseudomonas fluorescens SBW25 PFLU_RS13305 sigma-70 family RNA polymerase sigma factor insig. 37 17
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13305 sigma-70 family RNA polymerase sigma factor sig. 37 17
  Acidovorax sp. GW101-3H11 Ac3H11_1599 RNA polymerase sigma factor insig. 29 22
  Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 26 41
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS01610 RNA polymerase sigma-70 factor insig. 28 41
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04530 sigma-70 family RNA polymerase sigma factor insig. 28 38
  Rhodopseudomonas palustris CGA009 TX73_008400 sigma-70 family RNA polymerase sigma factor insig. 25 38
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 25 39
  Mycobacterium tuberculosis H37Rv Rv1189 Possible alternative RNA polymerase sigma factor SigI no data 27 49
  Variovorax sp. SCN45 GFF96 RNA polymerase ECF-type sigma factor insig. 39 19
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF365 RNA polymerase sigma factor insig. 33 23
  Burkholderia phytofirmans PsJN BPHYT_RS15835 RNA polymerase subunit sigma24 insig. 31 32
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04104 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 41