Homologs of PP_2088 from Pseudomonas putida KT2440

RNA polymerase sigma factor SigX
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_2088 RNA polymerase sigma factor SigX strong 100 100
o Pseudomonas sp. BP01 JOY50_RS22140 sigX RNA polymerase sigma factor SigX insig. 100 96
o Pseudomonas sp. SVBP6 COO64_RS05350 sigX RNA polymerase sigma factor SigX no data 98 96
o Pseudomonas fluorescens FW300-N2C3 AO356_02795 RNA polymerase subunit sigma no data 92 100
o Pseudomonas simiae WCS417 PS417_20990 RNA polymerase sigma factor SigX no data 91 100
o Pseudomonas fluorescens SBW25 PFLU_RS22600 RNA polymerase sigma factor SigX strong 91 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22600 RNA polymerase sigma factor SigX strong 91 100
o Pseudomonas fluorescens FW300-N2E3 AO353_00830 RNA polymerase subunit sigma no data 95 96
o Pseudomonas syringae pv. syringae B728a Psyr_2096 Sigma-70 region 2 no data 90 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2096 Sigma-70 region 2 no data 90 100
o Pseudomonas segetis P6 MPMX49_02617 hypothetical protein no data 90 96
o Pseudomonas sp. S08-1 OH686_01630 RNA polymerase sigma factor SigX no data 90 100
o Pseudomonas stutzeri RCH2 Psest_2311 RNA polymerase sigma factor, sigma-70 family no data 87 100
o Pseudomonas aeruginosa PA14 IKLFDK_08585 RNA polymerase sigma factor SigX no data 93 84
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2383 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like no data 96 65
  Pseudomonas sp. DMC3 GFF5242 hypothetical protein no data 95 65
  Pseudomonas sp. RS175 PFR28_01044 hypothetical protein no data 95 65
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4106 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like no data 95 65
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3832 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like no data 95 65
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04343 hypothetical protein strong 95 65
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4578 RNA polymerase sigma factor, sigma-70 family insig. 28 90
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22010 RNA polymerase sigma factor insig. 30 90
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21575 RNA polymerase subunit sigma insig. 29 90
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 29 87
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10600 RNA polymerase subunit sigma-24 strong 30 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04360 sigma-70 family RNA polymerase sigma factor insig. 28 83
  Pseudomonas aeruginosa PA14 IKLFDK_14715 ECF family RNA polymerase sigma factor SbrI insig. 30 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16905 sigma-70 family RNA polymerase sigma factor insig. 29 79
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 80
  Phocaeicola dorei CL03T12C01 ABI39_RS12815 sigma-70 family RNA polymerase sigma factor insig. 29 79
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 30 79
  Kangiella aquimarina DSM 16071 B158DRAFT_0139 RNA polymerase sigma factor, sigma-70 family insig. 29 79
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07715 RNA polymerase sigma factor no data 29 81
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16705 RNA polymerase sigma factor strong 27 84
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 24 93
  Paraburkholderia sabiae LMG 24235 QEN71_RS18240 RNA polymerase sigma factor insig. 28 80
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 27 80
  Cellulophaga baltica 18 M666_RS15960 RNA polymerase sigma factor insig. 39 48
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07040 RNA polymerase sigma factor insig. 29 80
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS07350 sigma-70 family RNA polymerase sigma factor insig. 27 80
  Mycobacterium tuberculosis H37Rv Rv0182c Probable alternative RNA polymerase sigma factor SigG (RNA polymerase ECF type sigma factor) insig. 28 74
  Bacteroides thetaiotaomicron VPI-5482 BT1817 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 24 79
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02825 sigma-70 family RNA polymerase sigma factor insig. 29 80
  Pseudomonas segetis P6 MPMX49_03262 ECF RNA polymerase sigma-E factor sig. 30 83
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00665 RNA polymerase subunit sigma-24 strong 32 76
  Bacteroides stercoris CC31F HMPREF1181_RS05860 sigma-70 family RNA polymerase sigma factor insig. 27 81
  Alteromonas macleodii MIT1002 MIT1002_03807 Sigma-W factor insig. 27 83
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04263 ECF RNA polymerase sigma-E factor insig. 30 83
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00655 RNA polymerase subunit sigma-24 strong 28 78
  Kangiella aquimarina DSM 16071 B158DRAFT_0596 RNA polymerase sigma factor, sigma-70 family insig. 28 81
  Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 27 90
  Cellulophaga baltica 18 M666_RS11420 RNA polymerase sigma factor insig. 28 80
o Rhodanobacter denitrificans MT42 LRK55_RS02580 sigma-70 family RNA polymerase sigma factor insig. 28 80
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 28 81
  Bacteroides ovatus ATCC 8483 BACOVA_00397 Sigma-70 region 2 sig. 26 80
  Shewanella amazonensis SB2B Sama_2611 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 26 79
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 25 73
  Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 32 71
  Cupriavidus basilensis FW507-4G11 RR42_RS05730 DNA-directed RNA polymerase sigma-70 factor insig. 28 79
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16945 RNA polymerase sigma factor sig. 27 78
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14945 RNA polymerase subunit sigma-24 strong 27 80
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 30 86
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00795 sigma-70 family RNA polymerase sigma factor strong 27 89
  Pseudomonas sp. RS175 PFR28_00741 ECF RNA polymerase sigma-E factor insig. 30 76
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS19220 sigma-70 family RNA polymerase sigma factor insig. 27 91
  Pseudomonas aeruginosa PA14 IKLFDK_16830 RNA polymerase subunit sigma-24 insig. 29 92
  Phocaeicola dorei CL03T12C01 ABI39_RS12855 RNA polymerase sigma factor insig. 27 78
  Pseudomonas sp. SVBP6 COO64_RS21990 RNA polymerase sigma factor insig. 27 83
  Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 26 79
  Cellulophaga baltica 18 M666_RS11290 sigma-70 family RNA polymerase sigma factor insig. 29 73
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 28 79
  Shewanella loihica PV-4 Shew_2956 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 28 90
  Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 28 90
  Bacteroides thetaiotaomicron VPI-5482 BT2492 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 24 78
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 31 81
  Bacteroides thetaiotaomicron VPI-5482 BT4647 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 79
  Pseudomonas fluorescens SBW25 PFLU_RS00840 RNA polymerase sigma factor insig. 28 89
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00840 RNA polymerase sigma factor sig. 28 89
  Pseudomonas simiae WCS417 PS417_00810 RNA polymerase sigma factor insig. 28 89
  Magnetospirillum magneticum AMB-1 AMB_RS14160 RNA polymerase sigma factor cofit 29 82
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00391 RNA polymerase sigma-H factor cofit 28 89
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15190 RNA polymerase sigma factor insig. 27 93
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 26 92
  Fusobacterium nucleatum SB010 HUW76_07635 RNA polymerase sigma factor no data 31 76
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 29 79
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1738 RNA polymerase sigma-54 factor RpoN insig. 30 80
  Kangiella aquimarina DSM 16071 B158DRAFT_2027 RNA polymerase sigma factor, sigma-70 family insig. 26 80
  Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 28 91
  Pseudomonas sp. S08-1 OH686_05515 RNA polymerase sigma factor RpoE cofit 28 92
  Pseudomonas fluorescens FW300-N2C3 AO356_04270 RNA polymerase subunit sigma-24 insig. 27 83
  Variovorax sp. OAS795 ABID97_RS28845 RNA polymerase sigma factor insig. 26 80
  Pseudomonas sp. S08-1 OH686_04120 RNA polymerase sigma factor RpoE insig. 29 80
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 29 78
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 28 82
  Shewanella loihica PV-4 Shew_1231 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 28 81
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3390 RNA polymerase sigma factor RpoE insig. 41 40
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 30 77
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 30 77
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 27 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14290 sigma-70 family RNA polymerase sigma factor insig. 27 88