| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Agrobacterium fabrum C58 | Atu2145 | | transcriptional regulator, RpiR family | sig. | 100 | 100 |
| o | Rhizobium sp. OAE497 | ABIE40_RS12055 | | MurR/RpiR family transcriptional regulator | sig. | 79 | 99 |
| o | Sinorhizobium meliloti 1021 | SMc01602 | | hypothetical protein | insig. | 67 | 98 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c27130 | | putative HTH-type transcriptional regulator | strong | 52 | 99 |
| | Sinorhizobium meliloti 1021 | SMc02353 | | hypothetical protein | insig. | 33 | 95 |
| | Rhizobium sp. OAE497 | ABIE40_RS20155 | | MurR/RpiR family transcriptional regulator | cofit | 31 | 89 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS26180 | | hypothetical protein | insig. | 33 | 89 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS25830 | qapR;inference=COORDINATES | transcriptional repressor QapR | strong | 32 | 90 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS58260 | qapR;inference=COORDINATES | transcriptional repressor QapR | strong | 32 | 90 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_25880 | | transcriptional repressor QapR | strong | 32 | 90 |
| | Rhizobium sp. OAE497 | ABIE40_RS21085 | | MurR/RpiR family transcriptional regulator | strong | 31 | 92 |
| o | Pseudomonas sp. DMC3 | GFF992 | | hypothetical protein | cofit | 31 | 89 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_01500 | | RpiR family transcriptional regulator | strong | 31 | 89 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5851 | | Transcriptional regulator, RpiR family | insig. | 30 | 89 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2175 | | Transcriptional regulator, RpiR family | strong | 30 | 89 |
| o | Pseudomonas sp. RS175 | PFR28_01273 | | hypothetical protein | cofit | 31 | 90 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_27890 | | RpiR family transcriptional regulator | strong | 30 | 89 |
| o | Variovorax sp. SCN45 | GFF2285 | | Transcriptional regulator, RpiR family | insig. | 32 | 90 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS26890 | | RpiR family transcriptional regulator | insig. | 28 | 90 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_1959 | | Transcriptional regulator, RpiR family | insig. | 28 | 89 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS14095 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 81 |
| | Pectobacterium carotovorum WPP14 | HER17_RS11785 | | MurR/RpiR family transcriptional regulator | cofit | 28 | 80 |
| | Rahnella sp. WP5 | EX31_RS10635 | | MurR/RpiR family transcriptional regulator | sig. | 28 | 80 |
| o | Pantoea sp. MT58 | IAI47_03370 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 93 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_1118 | | transcriptional regulator, RpiR family | insig. | 27 | 86 |
| o | Enterobacter sp. TBS_079 | MPMX20_02354 | | hypothetical protein | insig. | 28 | 89 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS17530 | | RpiR family transcriptional regulator | strong | 25 | 84 |
| | Ralstonia solanacearum GMI1000 | RS_RS08795 | | MurR/RpiR family transcriptional regulator | sig. | 26 | 81 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12065 | | MurR/RpiR family transcriptional regulator | strong | 21 | 93 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS11800 | | MurR/RpiR family transcriptional regulator | cofit | 21 | 93 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS11695 | | MurR/RpiR family transcriptional regulator | insig. | 30 | 92 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS17250 | | MurR/RpiR family transcriptional regulator | insig. | 30 | 88 |
| | Ralstonia solanacearum GMI1000 | RS_RS06905 | | MurR/RpiR family transcriptional regulator | insig. | 30 | 88 |
| | Serratia liquefaciens MT49 | IAI46_14580 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 80 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS00230 | | MurR/RpiR family transcriptional regulator | insig. | 30 | 88 |
| | Ralstonia solanacearum UW163 | UW163_RS13560 | | MurR/RpiR family transcriptional regulator | no data | 30 | 88 |
| | Dickeya dianthicola 67-19 | HGI48_RS10160 | | MurR/RpiR family transcriptional regulator | cofit | 28 | 80 |
| | Dickeya dianthicola ME23 | DZA65_RS10575 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 80 |
| | Shewanella loihica PV-4 | Shew_2049 | | DNA-binding transcriptional regulator HexR (RefSeq) | strong | 26 | 91 |
| | Dickeya dadantii 3937 | DDA3937_RS10130 | | MurR/RpiR family transcriptional regulator | cofit | 28 | 80 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS05080 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 86 |
| | Pantoea sp. MT58 | IAI47_08490 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 75 |
| | Pseudomonas sp. DMC3 | GFF1723 | | HTH-type transcriptional regulator MurR | cofit | 24 | 86 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS13890 | | RpiR family transcriptional regulator | strong | 25 | 86 |
| | Pseudomonas sp. RS175 | PFR28_02426 | | HTH-type transcriptional regulator MurR | strong | 25 | 86 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS17960 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 73 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS12005 | | transcriptional regulator | insig. | 27 | 83 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS26840 | | DNA-binding protein | strong | 26 | 83 |
| | Pseudomonas orientalis W4I3 | QF045_RS14570 | | MurR/RpiR family transcriptional regulator | cofit | 24 | 86 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS15395 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 74 |
| | Ralstonia solanacearum UW163 | UW163_RS12855 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 74 |
| | Paraburkholderia graminis OAS925 | ABIE53_002944 | | DNA-binding MurR/RpiR family transcriptional regulator | strong | 24 | 86 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS12580 | | MurR/RpiR family transcriptional regulator | strong | 24 | 86 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS12580 | | MurR/RpiR family transcriptional regulator | strong | 24 | 86 |
| | Pseudomonas simiae WCS417 | PS417_11845 | | RpiR family transcriptional regulator | strong | 24 | 86 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4273 | | Predicted transcriptional regulator of the myo-inositol catabolic operon | sig. | 25 | 86 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04463 | | transcriptional regulator, RpiR family | strong | 24 | 86 |
| | Erwinia amylovora T8 | OLJFJH_04440 | | MurR/RpiR family transcriptional regulator | strong | 24 | 86 |
| o | Fusobacterium nucleatum SB010 | HUW76_09985 | | MurR/RpiR family transcriptional regulator | cofit | 22 | 92 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0703 | | transcriptional regulator, RpiR family | insig. | 27 | 80 |
| | Shewanella amazonensis SB2B | Sama_1813 | | DNA-binding transcriptional regulator HexR (RefSeq) | strong | 27 | 84 |
| | Shewanella oneidensis MR-1 | SO2490 | | transcriptional regulator, RpiR family (NCBI ptt file) | strong | 28 | 78 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS02370 | | transcriptional regulator HexR | cofit | 27 | 75 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02611 | | transcriptional regulator, RpiR family | strong | 27 | 76 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02650 | | HTH-type transcriptional regulator MurR | cofit | 24 | 86 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_23155 | | RpiR family transcriptional regulator | strong | 24 | 86 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_510 | | Predicted transcriptional regulator of the myo-inositol catabolic operon | strong | 24 | 86 |
| o | Bosea sp. OAE506 | ABIE41_RS16720 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 94 |
| | Shewanella sp. ANA-3 | Shewana3_2152 | | DNA-binding transcriptional regulator HexR (RefSeq) | strong | 28 | 78 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21330 | | RpiR family transcriptional regulator | sig. | 24 | 86 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF883 | | Predicted transcriptional regulator of the myo-inositol catabolic operon | strong | 23 | 86 |
| | Pseudomonas sp. S08-1 | OH686_02440 | | Phosphogluconate repressor HexR, RpiR family | strong | 28 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_06075 | | HTH-type transcriptional regulator HexR | no data | 27 | 86 |
| | Pseudomonas segetis P6 | ACVTMO_RS14030 | | MurR/RpiR family transcriptional regulator | sig. | 28 | 86 |
| | Enterobacter sp. TBS_079 | MPMX20_02758 | | HTH-type transcriptional regulator HexR | strong | 27 | 80 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3275 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | sig. | 24 | 86 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3275 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | insig. | 24 | 86 |
| | Escherichia fergusonii Becca | EFB2_02089 | | HTH-type transcriptional regulator HexR | insig. | 26 | 80 |
| | Escherichia coli ECOR27 | NOLOHH_16840 | hexR | DNA-binding transcriptional regulator HexR | insig. | 26 | 80 |
| | Escherichia coli ECOR38 | HEPCGN_04730 | hexR | DNA-binding transcriptional regulator HexR | insig. | 26 | 80 |
| | Escherichia coli ECRC100 | OKFHMN_26325 | hexR | DNA-binding transcriptional regulator HexR | cofit | 26 | 80 |
| | Escherichia coli ECRC101 | MCAODC_19080 | hexR | DNA-binding transcriptional regulator HexR | sig. | 26 | 80 |
| | Escherichia coli ECRC102 | NIAGMN_01735 | hexR | DNA-binding transcriptional regulator HexR | insig. | 26 | 80 |
| | Escherichia coli ECRC62 | BNILDI_15635 | hexR | DNA-binding transcriptional regulator HexR | insig. | 26 | 80 |
| | Escherichia coli ECRC98 | JDDGAC_00900 | hexR | DNA-binding transcriptional regulator HexR | insig. | 26 | 80 |
| | Escherichia coli ECRC99 | KEDOAH_01780 | hexR | DNA-binding transcriptional regulator HexR | no data | 26 | 80 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS10325 | | DNA-binding transcriptional regulator HexR | cofit | 26 | 80 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS33775 | | MurR/RpiR family transcriptional regulator | strong | 25 | 82 |
| | Escherichia coli BL21 | ECD_01824 | | putative DNA-binding transcriptional regulator | cofit | 26 | 80 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01875 | | HTH-type transcriptional regulator HexR | insig. | 26 | 80 |
| | Escherichia coli BW25113 | b1853 | yebK | predicted DNA-binding transcriptional regulator (NCBI) | strong | 26 | 80 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_22185 | | transcriptional regulator HexR | cofit | 25 | 82 |
| | Erwinia tracheiphila SCR3 | LU632_RS13365 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 82 |
| | Serratia liquefaciens MT49 | IAI46_24010 | | MurR/RpiR family transcriptional regulator | strong | 23 | 86 |
| | Serratia liquefaciens MT49 | IAI46_12855 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 78 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30190 | | transcriptional regulator | insig. | 29 | 75 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_25375 | | transcriptional regulator HexR | insig. | 26 | 80 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_06545 | rpiR | MurR/RpiR family transcriptional regulator | sig. | 24 | 86 |
| | Erwinia tracheiphila SCR3 | LU632_RS02360 | | MurR/RpiR family transcriptional regulator | insig. | 24 | 86 |
| o | Pseudomonas sp. SVBP6 | COO64_RS14535 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 88 |