Homologs of ABZR87_RS14960 from Ralstonia sp. UNC404CL21Col

RNA polymerase sigma factor
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Ralstonia sp. UNC404CL21Col ABZR87_RS14960 RNA polymerase sigma factor insig. 100 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS03055 RNA polymerase sigma factor strong 96 100
o Ralstonia solanacearum UW163 UW163_RS10670 RNA polymerase sigma factor insig. 96 100
o Ralstonia solanacearum PSI07 RPSI07_RS14250 RNA polymerase sigma factor cofit 94 100
o Ralstonia solanacearum GMI1000 RS_RS10425 RNA polymerase sigma factor cofit 95 100
o Cupriavidus basilensis FW507-4G11 RR42_RS05430 DNA-directed RNA polymerase sigma-70 factor strong 79 100
  Paraburkholderia graminis OAS925 ABIE53_001573 RNA polymerase sigma-70 factor (ECF subfamily) strong 74 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS24230 RNA polymerase sigma factor insig. 74 100
o Burkholderia phytofirmans PsJN BPHYT_RS06540 RNA polymerase sigma70 factor strong 73 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04550 RNA polymerase, sigma-24 subunit, RpoE strong 73 100
o Herbaspirillum seropedicae SmR1 HSERO_RS08645 RNA polymerase sigma70 factor sig. 76 100
o Dechlorosoma suillum PS Dsui_3530 DNA-directed RNA polymerase specialized sigma subunit, sigma24 insig. 66 100
o Methylophilus sp. DMC18 GFF2306 RNA polymerase sigma factor FliA insig. 63 99
o Variovorax sp. OAS795 ABID97_RS14880 RNA polymerase sigma factor cofit 61 100
o Acidovorax sp. GW101-3H11 Ac3H11_524 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like cofit 61 99
o Variovorax sp. SCN45 GFF1157 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like insig. 59 100
  Rhodanobacter sp. FW510-T8 OKGIIK_10685 rpoE RNA polymerase sigma factor cofit 44 91
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS22130 RNA polymerase sigma factor insig. 46 91
o Rhodanobacter denitrificans MT42 LRK55_RS03585 RNA polymerase sigma factor strong 43 91
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS03835 RNA polymerase sigma factor strong 43 91
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS06105 RNA polymerase sigma factor insig. 43 91
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4203.1 RNA polymerase sigma-54 factor RpoN insig. 40 91
o Lysobacter sp. OAE881 ABIE51_RS05545 RNA polymerase sigma factor insig. 41 93
o Acinetobacter radioresistens SK82 MPMX26_02199 hypothetical protein no data 34 95
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 29 89
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 93
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16705 RNA polymerase sigma factor strong 30 94
  Lysobacter sp. OAE881 ABIE51_RS06950 RNA polymerase sigma factor strong 28 84
o Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 27 85
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11705 hypothetical protein insig. 29 87
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00655 RNA polymerase subunit sigma-24 strong 29 95
  Castellaniella sp019104865 MT123 ABCV34_RS07155 RNA polymerase sigma factor insig. 30 94
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 30 74
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family strong 29 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 28 76
  Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 30 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 26 76
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 27 72
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 27 72
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0532 RNA polymerase sigma factor, sigma-70 family insig. 29 84
  Variovorax sp. OAS795 ABID97_RS28845 RNA polymerase sigma factor insig. 28 87
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 27 76
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12095 RNA polymerase subunit sigma-70 insig. 27 80
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 26 74
  Paraburkholderia sabiae LMG 24235 QEN71_RS18240 RNA polymerase sigma factor insig. 29 89
  Methylophilus sp. DMC18 GFF230 hypothetical protein insig. 27 78
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 30 78
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 26 76
  Phocaeicola dorei CL03T12C01 ABI39_RS08670 RNA polymerase sigma-70 factor cofit 29 90
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 27 98
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11995 RNA polymerase subunit sigma insig. 26 87
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01799 RNA polymerase sigma-70 factor, ECF subfamily insig. 23 94
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 30 79
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 26 76
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 25 76
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 24 87
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20645 RNA polymerase subunit sigma-70 insig. 22 83
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00795 sigma-70 family RNA polymerase sigma factor strong 28 85
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16550 RNA polymerase sigma factor strong 27 88
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 23 92
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 23 92
  Pseudomonas sp. BP01 JOY50_RS14665 rpoE RNA polymerase sigma factor RpoE insig. 23 92
  Pseudomonas sp. DMC3 GFF2277 RNA polymerase sigma-H factor cofit 23 92
  Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 23 92
  Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 23 92
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 23 92
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 23 92
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 23 92
  Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 23 92
  Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 23 92
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 23 92
  Cellulophaga baltica 18 M666_RS13935 sigma-70 family RNA polymerase sigma factor no data 27 94
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 24 80
  Pseudomonas sp. SVBP6 COO64_RS16525 rpoE RNA polymerase sigma factor RpoE insig. 23 92
  Phocaeicola dorei CL03T12C01 ABI39_RS01635 RNA polymerase sigma-70 factor insig. 38 41
  Phocaeicola dorei CL03T12C01 ABI39_RS09110 RNA polymerase sigma-70 factor insig. 32 39
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE cofit 31 79
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 26 95
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2139 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 34 38
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 32 83
  Cellulophaga baltica 18 M666_RS13930 sigma-70 family RNA polymerase sigma factor cofit 27 94
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 27 84
  Cupriavidus basilensis FW507-4G11 RR42_RS16520 RNA polymerase sigma factor insig. 24 94
  Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 27 94
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2161 RNA polymerase sigma factor, sigma-70 family insig. 30 43
  Xanthobacter sp. DMC5 GFF1190 ECF RNA polymerase sigma factor SigR insig. 27 86
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02390 RNA polymerase sigma-70 factor insig. 36 41
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 32 77
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS00650 RNA polymerase sigma factor insig. 29 82
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 22 92
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 29 84
  Rhodanobacter sp. FW510-T8 OKGIIK_14380 RNA polymerase sigma factor insig. 28 81
  Variovorax sp. SCN45 GFF5806 RNA polymerase ECF-type sigma factor insig. 27 88
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 23 92
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 23 92
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 29 77
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_563 RNA polymerase sigma-70 factor insig. 27 78
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 26 76
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 25 98
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2047 RNA polymerase sigma factor, sigma-70 family strong 23 87