Conservation of cofitness between Xcc-8004.4605.1 and Xcc-8004.3524.1 in Xanthomonas campestris pv. campestris strain 8004

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4605.1 FIG001943: hypothetical protein YajQ 1.0 Xcc-8004.3524.1 Inner membrane component of tripartite multidrug resistance system 0.33 13
Lysobacter sp. OAE881 0.81 ABIE51_RS18465 YajQ family cyclic di-GMP-binding protein 0.73 ABIE51_RS07705 DHA2 family efflux MFS transporter permease subunit low > 62
Rhodanobacter sp. FW510-T8 0.79 OKGIIK_03500 yajQ YajQ family cyclic di-GMP-binding protein 0.66 OKGIIK_14290 emrB MFS transporter low > 52
Rhodanobacter denitrificans MT42 0.78 LRK55_RS14390 YajQ family cyclic di-GMP-binding protein 0.66 LRK55_RS07520 DHA2 family efflux MFS transporter permease subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.78 LRK54_RS14675 YajQ family cyclic di-GMP-binding protein 0.66 LRK54_RS07790 DHA2 family efflux MFS transporter permease subunit low > 59
Castellaniella sp019104865 MT123 0.77 ABCV34_RS15080 YajQ family cyclic di-GMP-binding protein 0.58 ABCV34_RS13880 DHA2 family efflux MFS transporter permease subunit low > 48
Dyella japonica UNC79MFTsu3.2 0.77 ABZR86_RS00410 YajQ family cyclic di-GMP-binding protein 0.66 ABZR86_RS14765 DHA2 family efflux MFS transporter permease subunit low > 74
Pseudomonas sp. RS175 0.53 PFR28_03425 hypothetical protein 0.61 PFR28_02747 Multidrug export protein EmrB low > 88
Pseudomonas simiae WCS417 0.52 PS417_22510 nucleotide-binding protein 0.61 PS417_16910 multidrug resistance protein B — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_03640 nucleotide-binding protein 0.62 AO353_27840 multidrug resistance protein B low > 101
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS24150 YajQ family cyclic di-GMP-binding protein 0.61 PFLU_RS18895 DHA2 family efflux MFS transporter permease subunit low > 109
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_4087 Protein of unknown function DUF520 0.61 Psyr_1731 Drug resistance transporter EmrB/QacA subfamily low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_4087 Protein of unknown function DUF520 0.61 Psyr_1731 Drug resistance transporter EmrB/QacA subfamily — —
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_650 FIG001943: hypothetical protein YajQ 0.61 Pf1N1B4_4002 Inner membrane component of tripartite multidrug resistance system low > 87
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_1840 FIG001943: hypothetical protein YajQ 0.61 PfGW456L13_2606 Inner membrane component of tripartite multidrug resistance system — —
Pseudomonas fluorescens SBW25 0.52 PFLU_RS24150 YajQ family cyclic di-GMP-binding protein 0.61 PFLU_RS18895 DHA2 family efflux MFS transporter permease subunit low > 109
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_5522 FIG001943: hypothetical protein YajQ 0.60 Pf6N2E2_149 Inner membrane component of tripartite multidrug resistance system low > 103
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_17960 nucleotide-binding protein 0.61 AO356_01025 multidrug resistance protein B low > 104
Pseudomonas putida KT2440 0.50 PP_1352 UPF0234 protein PP_1352 0.61 PP_3548 multidrug efflux transport system - permease subunit low > 96
Escherichia fergusonii Becca 0.50 EFB2_03631 hypothetical protein 0.44 EFB2_01242 Multidrug export protein EmrB low > 86
Escherichia coli BL21 0.50 ECD_00374 phage Phi6 host factor, ATP/GTP binding protein 0.44 ECD_02541 multidrug efflux system protein low > 61
Escherichia coli ECOR27 0.50 NOLOHH_01340 yajQ nucleotide binding protein YajQ 0.44 NOLOHH_12615 emrB multidrug efflux MFS transporter permease subunit EmrB low > 75
Escherichia coli ECRC62 0.50 BNILDI_22755 yajQ nucleotide binding protein YajQ 0.44 BNILDI_11175 emrB multidrug efflux MFS transporter permease subunit EmrB low > 75
Escherichia coli ECRC98 0.50 JDDGAC_12045 yajQ nucleotide binding protein YajQ 0.44 JDDGAC_24440 emrB multidrug efflux MFS transporter permease subunit EmrB low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03250 hypothetical protein 0.44 OHPLBJKB_01047 Multidrug export protein EmrB low > 73
Escherichia coli ECOR38 0.50 HEPCGN_07020 yajQ nucleotide binding protein YajQ 0.44 HEPCGN_19970 emrB multidrug efflux MFS transporter permease subunit EmrB low > 87
Escherichia coli BW25113 0.50 b0426 yajQ orf, hypothetical protein (VIMSS) 0.44 b2686 emrB multidrug efflux system protein (NCBI) low > 76
Escherichia coli ECRC99 0.50 KEDOAH_19575 yajQ nucleotide binding protein YajQ 0.44 KEDOAH_07360 emrB multidrug efflux MFS transporter permease subunit EmrB — —
Escherichia coli ECRC100 0.50 OKFHMN_08390 yajQ nucleotide binding protein YajQ 0.44 OKFHMN_20775 emrB multidrug efflux MFS transporter permease subunit EmrB — —
Escherichia coli ECRC102 0.50 NIAGMN_06445 yajQ nucleotide binding protein YajQ 0.44 NIAGMN_18545 emrB multidrug efflux MFS transporter permease subunit EmrB — —
Escherichia coli ECRC101 0.50 MCAODC_27615 yajQ nucleotide binding protein YajQ 0.44 MCAODC_11300 emrB multidrug efflux MFS transporter permease subunit EmrB low > 87
Escherichia coli Nissle 1917 0.50 ECOLIN_RS02565 nucleotide binding protein YajQ 0.45 ECOLIN_RS14970 multidrug efflux MFS transporter permease subunit EmrB — —
Pantoea sp. MT58 0.49 IAI47_14710 YajQ family cyclic di-GMP-binding protein 0.46 IAI47_04495 multidrug efflux MFS transporter permease subunit EmrB low > 76
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_07570 nucleotide-binding protein 0.36 CSW01_07075 MFS transporter low > 62
Dickeya dadantii 3937 0.48 DDA3937_RS05560 YajQ family cyclic di-GMP-binding protein 0.53 DDA3937_RS07315 DHA2 family efflux MFS transporter permease subunit low > 74
Enterobacter sp. TBS_079 0.48 MPMX20_01017 hypothetical protein 0.45 MPMX20_03564 Multidrug export protein EmrB low > 85
Dickeya dianthicola 67-19 0.48 HGI48_RS05620 YajQ family cyclic di-GMP-binding protein 0.51 HGI48_RS08135 DHA2 family efflux MFS transporter permease subunit — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2545 Uncharacterized protein conserved in bacteria 0.45 EX28DRAFT_2769 drug resistance transporter, EmrB/QacA subfamily low > 76
Pectobacterium carotovorum WPP14 0.48 HER17_RS15905 YajQ family cyclic di-GMP-binding protein 0.47 HER17_RS04460 multidrug efflux MFS transporter permease subunit EmrB low > 75
Klebsiella michiganensis M5al 0.47 BWI76_RS06410 YajQ family cyclic di-GMP-binding protein 0.46 BWI76_RS22100 multidrug effux MFS transporter subunit EmrB low > 92
Serratia liquefaciens MT49 0.47 IAI46_04955 YajQ family cyclic di-GMP-binding protein 0.44 IAI46_20005 multidrug efflux MFS transporter permease subunit EmrB low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF4337 FIG001943: hypothetical protein YajQ 0.46 GFF1593 Multidrug resistance protein B low > 78
Dickeya dianthicola ME23 0.47 DZA65_RS05945 YajQ family cyclic di-GMP-binding protein 0.52 DZA65_RS08730 DHA2 family efflux MFS transporter permease subunit low > 75
Erwinia tracheiphila SCR3 0.46 LU632_RS18450 YajQ family cyclic di-GMP-binding protein 0.30 LU632_RS09490 DHA2 family efflux MFS transporter permease subunit low > 74
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS07165 nucleotide-binding protein 0.43 HSERO_RS13575 DSBA oxidoreductase 0.21 62
Shewanella sp. ANA-3 0.46 Shewana3_0782 putative nucleotide-binding protein (RefSeq) 0.28 Shewana3_2224 EmrB/QacA family drug resistance transporter (RefSeq) low > 73
Variovorax sp. OAS795 0.45 ABID97_RS21685 YajQ family cyclic di-GMP-binding protein 0.42 ABID97_RS20390 DHA2 family efflux MFS transporter permease subunit — —
Azospirillum sp. SherDot2 0.45 MPMX19_04413 hypothetical protein 0.29 MPMX19_05353 Fatty acid resistance protein FarB low > 112
Variovorax sp. SCN45 0.45 GFF3099 UPF0234 protein Yitk 0.43 GFF4771 Multidrug efflux system EmrAB-OMF, inner-membrane proton/drug antiporter EmrB (MFS type) — —
Rahnella sp. WP5 0.45 EX31_RS22185 YajQ family cyclic di-GMP-binding protein 0.46 EX31_RS13660 multidrug efflux MFS transporter permease subunit EmrB low > 89
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2620 FIG001943: hypothetical protein YajQ 0.40 Ac3H11_2352 Inner membrane component of tripartite multidrug resistance system — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF292 FIG001943: hypothetical protein YajQ 0.45 GFF3757 Inner membrane component of tripartite multidrug resistance system — —
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS17155 nucleotide-binding protein 0.42 RR42_RS12830 multidrug resistance protein B — —
Ralstonia solanacearum GMI1000 0.42 RS_RS12780 nucleotide-binding protein 0.43 RS_RS06475 MFS transporter low > 80
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS00820 YajQ family cyclic di-GMP-binding protein 0.44 ABZR87_RS11225 DHA2 family efflux MFS transporter permease subunit low > 80
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS05160 YajQ family cyclic di-GMP-binding protein 0.44 RALBFv3_RS15695 MFS transporter low > 76
Paraburkholderia graminis OAS925 0.41 ABIE53_003357 uncharacterized protein YajQ (UPF0234 family) 0.45 ABIE53_000311 DHA2 family multidrug resistance protein — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS12140 YajQ family cyclic di-GMP-binding protein 0.43 RPSI07_RS17660 MFS transporter — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_04122 hypothetical protein 0.45 H281DRAFT_02341 MFS transporter, DHA2 family, multidrug resistance protein — —
Desulfovibrio vulgaris Miyazaki F 0.41 DvMF_3058 putative nucleotide-binding protein (RefSeq) 0.32 DvMF_1099 drug resistance transporter, EmrB/QacA subfamily (RefSeq) low > 51
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS15930 nucleotide-binding protein 0.44 BPHYT_RS19670 DSBA oxidoreductase — —
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS02775 YajQ family cyclic di-GMP-binding protein 0.43 QEN71_RS23085 DHA2 family efflux MFS transporter permease subunit — —
Acinetobacter radioresistens SK82 0.38 MPMX26_02644 hypothetical protein 0.38 MPMX26_02394 Multidrug export protein EmrB low > 36
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS09840 YajQ family cyclic di-GMP-binding protein 0.27 CA265_RS21345 MFS transporter low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS04840 YajQ family cyclic di-GMP-binding protein 0.30 ABZR88_RS20975 DHA2 family efflux MFS transporter permease subunit low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_15545 YajQ family cyclic di-GMP-binding protein 0.29 CA264_07170 MFS transporter low > 74

Not shown: 15 genomes with orthologs for Xcc-8004.4605.1 only; 6 genomes with orthologs for Xcc-8004.3524.1 only