Conservation of cofitness between Xcc-8004.1205.1 and Xcc-8004.3282.1 in Xanthomonas campestris pv. campestris strain 8004

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1205.1 hypothetical protein 1.0 Xcc-8004.3282.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.79 7
Lysobacter sp. OAE881 0.82 ABIE51_RS17260 RidA family protein 0.64 ABIE51_RS12145 prephenate dehydratase 0.87 46
Dyella japonica UNC79MFTsu3.2 0.79 ABZR86_RS11845 RidA family protein 0.62 ABZR86_RS02225 prephenate dehydratase 0.76 56
Rhodanobacter denitrificans MT42 0.79 LRK55_RS11525 RidA family protein 0.63 LRK55_RS00135 prephenate dehydratase low > 63
Rhodanobacter sp. FW510-T8 0.79 OKGIIK_12095 ridA reactive intermediate/imine deaminase 0.60 OKGIIK_06915 pheA prephenate dehydratase low > 52
Rhodanobacter denitrificans FW104-10B01 0.79 LRK54_RS11800 RidA family protein 0.63 LRK54_RS00395 prephenate dehydratase low > 59
Pseudomonas stutzeri RCH2 0.64 Psest_3818 endoribonuclease L-PSP, putative 0.45 Psest_1984 chorismate mutase domain of proteobacterial P-protein, clade 2 — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0208 endoribonuclease L-PSP 0.46 Psyr_3645 prephenate dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0208 endoribonuclease L-PSP 0.46 Psyr_3645 prephenate dehydratase — —
Marinobacter adhaerens HP15 0.62 HP15_306 YjgF-like protein 0.46 HP15_1362 chorismate mutase / prephenate dehydratase — —
Pseudomonas putida KT2440 0.61 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.46 PP_1769 chorismate mutase/Prephenate dehydratase — —
Pseudomonas simiae WCS417 0.61 PS417_27835 endoribonuclease 0.46 PS417_08125 prephenate dehydratase low > 88
Pseudomonas fluorescens SBW25 0.61 PFLU_RS29515 RidA family protein 0.46 PFLU_RS08095 prephenate dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.46 Pf6N2E2_2520 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) — —
Pseudomonas sp. RS175 0.61 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase 0.46 PFR28_00907 Bifunctional chorismate mutase/prephenate dehydratase — —
Dechlorosoma suillum PS 0.61 Dsui_0312 endoribonuclease L-PSP, putative 0.40 Dsui_1940 chorismate mutase, clade 2 — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS29515 RidA family protein 0.46 PFLU_RS08095 prephenate dehydratase — —
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_12475 reactive intermediate/imine deaminase 0.46 AO356_03465 prephenate dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.46 Pf1N1B4_350 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.73 24
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_09285 reactive intermediate/imine deaminase 0.46 AO353_02070 prephenate dehydratase 0.65 6
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.46 PfGW456L13_2176 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.69 13
Alteromonas macleodii MIT1002 0.58 MIT1002_00109 Putative reactive intermediate deaminase TdcF 0.19 MIT1002_01316 P-protein low > 70
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03565 Rid family detoxifying hydrolase 0.34 ABCV34_RS07110 prephenate dehydratase — —
Acinetobacter radioresistens SK82 0.57 MPMX26_02797 2-iminobutanoate/2-iminopropanoate deaminase 0.46 MPMX26_02021 Bifunctional chorismate mutase/prephenate dehydratase 0.77 28
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_0573 endoribonuclease L-PSP, putative 0.17 B158DRAFT_1385 Prephenate dehydratase low > 40
Pseudomonas sp. S08-1 0.57 OH686_13545 RidA/YER057c/UK114 superfamily protein 0.45 OH686_20870 Chorismate mutase I / Prephenate dehydratase low > 80
Desulfovibrio vulgaris Hildenborough JW710 0.53 DVU2647 endoribonuclease, L-PSP family (TIGR) 0.29 DVU0462 chorismate mutase/prephenate dehydratase (TIGR) low > 55
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_12735 RidA family protein 0.22 CSW01_03680 bifunctional chorismate mutase/prephenate dehydratase low > 62
Dickeya dadantii 3937 0.51 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase 0.18 DDA3937_RS16130 bifunctional chorismate mutase/prephenate dehydratase low > 74
Dickeya dianthicola 67-19 0.51 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase 0.18 HGI48_RS16250 bifunctional chorismate mutase/prephenate dehydratase — —
Dickeya dianthicola ME23 0.51 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase 0.18 DZA65_RS17345 bifunctional chorismate mutase/prephenate dehydratase low > 75
Escherichia coli ECRC102 0.50 NIAGMN_09725 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 NIAGMN_18995 pheA bifunctional chorismate mutase/prephenate dehydratase — —
Escherichia coli ECOR27 0.50 NOLOHH_04135 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 NOLOHH_12900 pheA bifunctional chorismate mutase/prephenate dehydratase low > 75
Escherichia coli ECRC62 0.50 BNILDI_07375 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 BNILDI_11705 pheA bifunctional chorismate mutase/prephenate dehydratase low > 75
Escherichia coli ECRC99 0.50 KEDOAH_16280 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 KEDOAH_06995 pheA bifunctional chorismate mutase/prephenate dehydratase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03791 2-iminobutanoate/2-iminopropanoate deaminase 0.20 OHPLBJKB_01109 P-protein low > 73
Escherichia fergusonii Becca 0.50 EFB2_04290 2-iminobutanoate/2-iminopropanoate deaminase 0.20 EFB2_01293 Bifunctional chorismate mutase/prephenate dehydratase low > 86
Escherichia coli BL21 0.50 ECD_04111 enamine/imine deaminase, reaction intermediate detoxification 0.20 ECD_02488 chorismate mutase and prephenate dehydratase, P-protein low > 61
Escherichia coli BW25113 0.50 b4243 yjgF orf, hypothetical protein (VIMSS) 0.20 b2599 pheA fused chorismate mutase P/prephenate dehydratase (NCBI) low > 76
Escherichia coli ECRC98 0.50 JDDGAC_15515 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 JDDGAC_24890 pheA bifunctional chorismate mutase/prephenate dehydratase low > 86
Escherichia coli ECRC101 0.50 MCAODC_02380 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 MCAODC_11755 pheA bifunctional chorismate mutase/prephenate dehydratase low > 87
Escherichia coli ECOR38 0.50 HEPCGN_10070 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 HEPCGN_20345 pheA bifunctional chorismate mutase/prephenate dehydratase low > 87
Escherichia coli Nissle 1917 0.50 ECOLIN_RS24615 2-iminobutanoate/2-iminopropanoate deaminase 0.20 ECOLIN_RS14695 bifunctional chorismate mutase/prephenate dehydratase low > 55
Escherichia coli ECRC100 0.50 OKFHMN_11875 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 OKFHMN_21225 pheA bifunctional chorismate mutase/prephenate dehydratase low > 80
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS41190 RidA family protein 0.38 QEN71_RS04070 prephenate dehydratase — —
Klebsiella michiganensis M5al 0.49 BWI76_RS02985 reactive intermediate/imine deaminase 0.19 BWI76_RS21465 bifunctional chorismate mutase/prephenate dehydratase 0.44 9
Rahnella sp. WP5 0.48 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase 0.17 EX31_RS07585 bifunctional chorismate mutase/prephenate dehydratase low > 89
Pantoea sp. MT58 0.48 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase 0.20 IAI47_04410 bifunctional chorismate mutase/prephenate dehydratase 0.87 12
Enterobacter sp. TBS_079 0.47 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase 0.21 MPMX20_03466 Bifunctional chorismate mutase/prephenate dehydratase 0.41 19
Enterobacter asburiae PDN3 0.47 EX28DRAFT_3444 reactive intermediate/imine deaminase 0.21 EX28DRAFT_2699 chorismate mutase (EC 5.4.99.5) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF928 Endoribonuclease L-PSP 0.18 GFF4179 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) low > 78
Pectobacterium carotovorum WPP14 0.47 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase 0.18 HER17_RS05385 bifunctional chorismate mutase/prephenate dehydratase low > 75
Erwinia tracheiphila SCR3 0.44 LU632_RS20960 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.20 LU632_RS16960 pheA bifunctional chorismate mutase/prephenate dehydratase low > 74
Desulfovibrio vulgaris Miyazaki F 0.43 DvMF_1512 endoribonuclease L-PSP (RefSeq) 0.31 DvMF_1749 prephenate dehydratase (RefSeq) — —
Serratia liquefaciens MT49 0.42 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase 0.18 IAI46_03965 bifunctional chorismate mutase/prephenate dehydratase low > 86
Ralstonia solanacearum UW163 0.39 UW163_RS22060 endoribonuclease L-PSP 0.38 UW163_RS16050 chorismate mutase — —
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS20925 endoribonuclease L-PSP 0.38 RALBFv3_RS13760 chorismate mutase low > 76
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS16710 endoribonuclease L-PSP 0.40 RR42_RS04460 chorismate mutase low > 128
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05869 2-iminobutanoate/2-iminopropanoate deaminase 0.37 H281DRAFT_03925 chorismate mutase low > 103
Variovorax sp. SCN45 0.33 GFF3442 RidA/YER057c/UK114 superfamily protein 0.36 GFF6182 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) low > 127
Variovorax sp. OAS795 0.32 ABID97_RS22895 RidA family protein 0.36 ABID97_RS09515 prephenate dehydratase — —
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS08735 hypothetical protein 0.40 HSERO_RS18430 chorismate mutase low > 78
Paraburkholderia graminis OAS925 0.28 ABIE53_000758 reactive intermediate/imine deaminase 0.37 ABIE53_003157 chorismate mutase/prephenate dehydratase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.35 GFF5343 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) low > 90
Ralstonia solanacearum GMI1000 0.26 RS_RS24425 RidA family protein 0.38 RS_RS04495 prephenate dehydratase low > 80
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS17675 RidA family protein 0.39 ABZR87_RS09450 prephenate dehydratase low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS06815 RidA family protein 0.38 RPSI07_RS19710 prephenate dehydratase low > 81

Not shown: 26 genomes with orthologs for Xcc-8004.1205.1 only; 2 genomes with orthologs for Xcc-8004.3282.1 only