Conservation of cofitness between TX73_019540 and TX73_012015 in Rhodopseudomonas palustris CGA009

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_019540 FAD-dependent oxidoreductase 1.0 TX73_012015 4-aminobutyrate--2-oxoglutarate transaminase 0.74 1
Rhizobium sp. OAE497 0.54 ABIE40_RS03380 FAD-binding oxidoreductase 0.53 ABIE40_RS00145 4-aminobutyrate--2-oxoglutarate transaminase low > 107
Sinorhizobium meliloti 1021 0.53 SMc00797 oxidoreductase 0.52 SM_b21186 4-aminobutyrate aminotransferase low > 103
Ralstonia solanacearum PSI07 0.53 RPSI07_RS07505 FAD-binding oxidoreductase 0.53 RPSI07_RS23805 4-aminobutyrate--2-oxoglutarate transaminase low > 81
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_03160 D-amino-acid dehydrogenase 0.58 H281DRAFT_03179 4-aminobutyrate aminotransferase apoenzyme — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS16195 FAD-binding oxidoreductase 0.53 RALBFv3_RS09545 4-aminobutyrate--2-oxoglutarate transaminase low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS16930 FAD-binding oxidoreductase 0.53 UW163_RS04035 4-aminobutyrate--2-oxoglutarate transaminase — —
Paraburkholderia graminis OAS925 0.52 ABIE53_004136 D-amino-acid dehydrogenase 0.56 ABIE53_004117 4-aminobutyrate aminotransferase low > 113
Pseudomonas putida KT2440 0.52 PP_3596 D-lysine oxidase 0.55 PP_0214 4-aminobutyrate aminotransferase 0.30 17
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS10270 D-amino acid dehydrogenase 0.58 BPHYT_RS22435 4-aminobutyrate aminotransferase low > 109
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS12475 FAD-binding oxidoreductase 0.58 QEN71_RS19980 4-aminobutyrate--2-oxoglutarate transaminase low > 153
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS23145 FAD-binding oxidoreductase 0.55 ABZR87_RS05190 4-aminobutyrate--2-oxoglutarate transaminase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF267 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.53 GFF2029 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 90
Shewanella loihica PV-4 0.24 Shew_2360 D-hydroxyproline dehydrogenase (from data) 0.51 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) low > 60
Ralstonia solanacearum GMI1000 0.23 RS_RS02525 FAD-dependent oxidoreductase 0.53 RS_RS00145 4-aminobutyrate--2-oxoglutarate transaminase low > 80
Shewanella amazonensis SB2B 0.23 Sama_1533 D-amino-acid dehydrogenase (RefSeq) 0.51 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) low > 62
Castellaniella sp019104865 MT123 0.21 ABCV34_RS10190 FAD-dependent oxidoreductase 0.55 ABCV34_RS01765 4-aminobutyrate--2-oxoglutarate transaminase low > 48
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS16215 FAD-binding oxidoreductase 0.53 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS16215 FAD-binding oxidoreductase 0.53 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_3586 D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster 0.53 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 87
Pseudomonas simiae WCS417 0.19 PS417_14320 FAD-dependent oxidoreductase 0.53 PS417_00900 4-aminobutyrate aminotransferase low > 88
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS22955 D-amino acid dehydrogenase 0.58 HSERO_RS05420 4-aminobutyrate aminotransferase low > 78
Azospirillum sp. SherDot2 0.18 MPMX19_04536 D-amino acid dehydrogenase 1 0.59 MPMX19_04919 5-aminovalerate aminotransferase DavT low > 112
Cupriavidus basilensis FW507-4G11 0.18 RR42_RS09075 amino acid dehydrogenase 0.59 RR42_RS21370 4-aminobutyrate aminotransferase low > 128
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.53 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) low > 103
Variovorax sp. OAS795 0.16 ABID97_RS22385 D-amino acid dehydrogenase 0.57 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase low > 91
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_12620 amino acid dehydrogenase 0.53 AO356_10715 4-aminobutyrate aminotransferase low > 104
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS00590 D-amino acid dehydrogenase 0.34 LRK54_RS04500 acetyl ornithine aminotransferase family protein low > 59
Pseudomonas sp. S08-1 0.16 OH686_13685 D-amino acid dehydrogenase 0.51 OH686_11880 4-aminobutyrate transaminase low > 80
Pseudomonas sp. RS175 0.16 PFR28_04399 D-amino acid dehydrogenase 1 0.53 PFR28_04756 5-aminovalerate aminotransferase DavT 0.42 53
Pseudomonas fluorescens FW300-N2E3 0.16 AO353_09155 amino acid dehydrogenase 0.53 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) low > 101
Rhodanobacter denitrificans MT42 0.16 LRK55_RS00360 D-amino acid dehydrogenase 0.34 LRK55_RS04275 acetyl ornithine aminotransferase family protein low > 63
Variovorax sp. SCN45 0.16 GFF1773 D-amino acid dehydrogenase (EC 1.4.99.6) 0.53 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 127
Pseudomonas fluorescens FW300-N1B4 0.16 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.53 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 87
Pseudomonas stutzeri RCH2 0.16 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.53 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type low > 67
Pectobacterium carotovorum WPP14 0.15 HER17_RS11170 D-amino acid dehydrogenase 0.54 HER17_RS09880 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_0235 D-amino acid dehydrogenase small subunit 0.50 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_0235 D-amino acid dehydrogenase small subunit 0.50 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.53 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 78
Rahnella sp. WP5 0.14 EX31_RS10485 D-amino acid dehydrogenase 0.52 EX31_RS00095 4-aminobutyrate--2-oxoglutarate transaminase low > 89
Azospirillum brasilense Sp245 0.14 AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.62 AZOBR_RS19630 4-aminobutyrate aminotransferase low > 97
Dickeya dianthicola 67-19 0.14 HGI48_RS11195 D-amino acid dehydrogenase 0.53 HGI48_RS11860 4-aminobutyrate--2-oxoglutarate transaminase low > 71
Dickeya dadantii 3937 0.14 DDA3937_RS11170 D-amino acid dehydrogenase 0.54 DDA3937_RS11830 4-aminobutyrate--2-oxoglutarate transaminase low > 74
Dickeya dianthicola ME23 0.14 DZA65_RS11540 D-amino acid dehydrogenase 0.54 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Klebsiella michiganensis M5al 0.14 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.55 BWI76_RS26375 aspartate aminotransferase family protein low > 92
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.52 EX28DRAFT_1503 4-aminobutyrate aminotransferase, prokaryotic type low > 76
Escherichia coli ECRC102 0.13 NIAGMN_27930 dadA D-amino acid dehydrogenase 0.53 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Acidovorax sp. GW101-3H11 0.13 Ac3H11_1644 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.55 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 79
Escherichia coli BL21 0.13 ECD_01164 D-amino acid dehydrogenase 0.53 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent low > 61
Escherichia coli Nissle 1917 0.13 ECOLIN_RS07185 D-amino acid dehydrogenase 0.53 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC99 0.13 KEDOAH_25305 dadA D-amino acid dehydrogenase 0.53 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia fergusonii Becca 0.13 EFB2_02743 D-amino acid dehydrogenase 0.53 EFB2_01268 4-aminobutyrate aminotransferase GabT low > 86
Escherichia coli BW25113 0.13 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 0.53 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_02500 D-amino acid dehydrogenase 0.53 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT low > 73
Pantoea sp. MT58 0.13 IAI47_08890 D-amino acid dehydrogenase 0.50 IAI47_19475 4-aminobutyrate--2-oxoglutarate transaminase low > 76
Escherichia coli ECRC98 0.13 JDDGAC_06220 dadA D-amino acid dehydrogenase 0.53 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC101 0.13 MCAODC_21880 dadA D-amino acid dehydrogenase 0.53 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 87
Escherichia coli ECRC100 0.13 OKFHMN_28290 dadA D-amino acid dehydrogenase 0.53 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECOR27 0.13 NOLOHH_20725 dadA D-amino acid dehydrogenase 0.53 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Escherichia coli ECRC62 0.13 BNILDI_18890 dadA D-amino acid dehydrogenase 0.53 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Escherichia coli ECOR38 0.13 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.53 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 87
Enterobacter sp. TBS_079 0.13 MPMX20_02699 D-amino acid dehydrogenase 0.51 MPMX20_04337 4-aminobutyrate aminotransferase PuuE low > 85
Acinetobacter radioresistens SK82 0.12 MPMX26_01248 D-amino acid dehydrogenase 0.53 MPMX26_01998 4-aminobutyrate aminotransferase PuuE low > 36
Marinobacter adhaerens HP15 0.12 HP15_2610 D-amino acid dehydrogenase small subunit 0.51 HP15_3708 4-aminobutyrate aminotransferase low > 73
Serratia liquefaciens MT49 0.12 IAI46_14460 D-amino acid dehydrogenase 0.52 IAI46_22165 4-aminobutyrate--2-oxoglutarate transaminase low > 86

Not shown: 16 genomes with orthologs for TX73_019540 only; 3 genomes with orthologs for TX73_012015 only