| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc01012 | | hypothetical protein | 1.0 | SMc02868 | | multidrug efflux system protein | 0.35 | 3 |
| Rhizobium sp. OAE497 | 0.79 | ABIE40_RS09685 | | nitroreductase | 0.34 | ABIE40_RS24220 | | efflux RND transporter periplasmic adaptor subunit | low | > 107 |
| Agrobacterium fabrum C58 | 0.66 | Atu1744 | | nitroreductase family protein | 0.55 | Atu3203 | | RND multidrug efflux membrane permease | low | > 89 |
| Bosea sp. OAE506 | 0.48 | ABIE41_RS14115 | | nitroreductase | 0.36 | ABIE41_RS01600 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Rhodopseudomonas palustris CGA009 | 0.47 | TX73_017620 | | nitroreductase | 0.52 | TX73_020240 | | efflux RND transporter periplasmic adaptor subunit | low | > 86 |
| Caulobacter crescentus NA1000 | 0.40 | CCNA_02736 | | nitroreductase family | 0.32 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.40 | CCNA_02736 | | nitroreductase family | 0.32 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | low | > 67 |
| Rhodanobacter sp. FW510-T8 | 0.39 | OKGIIK_10710 | | Putative NAD(P)H nitroreductase | 0.31 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.4214.1 | | Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) | 0.38 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.37 | LRK54_RS03860 | | nitroreductase | 0.29 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | low | > 59 |
| Sphingomonas koreensis DSMZ 15582 | 0.37 | Ga0059261_1311 | | Nitroreductase | 0.34 | Ga0059261_0560 | | RND family efflux transporter, MFP subunit | low | > 68 |
| Rhodanobacter denitrificans MT42 | 0.37 | LRK55_RS03610 | | nitroreductase | 0.29 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | low | > 63 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS05520 | | nitroreductase | 0.28 | ABIE51_RS17985 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS22155 | | nitroreductase | 0.38 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Burkholderia phytofirmans PsJN | 0.32 | BPHYT_RS35735 | | nitroreductase | 0.35 | BPHYT_RS34600 | | hemolysin D | low | > 109 |
| Kangiella aquimarina DSM 16071 | 0.31 | B158DRAFT_1412 | | Nitroreductase | 0.30 | B158DRAFT_0734 | | RND family efflux transporter, MFP subunit | low | > 40 |
| Pseudomonas putida KT2440 | 0.29 | PP_4506 | | Nitroreductase family protein | 0.39 | PP_3455 | | Multidrug efflux RND membrane fusion protein | low | > 96 |
| Shewanella sp. ANA-3 | 0.28 | Shewana3_2494 | | nitroreductase (RefSeq) | 0.39 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 73 |
| Pseudomonas fluorescens FW300-N2C3 | 0.28 | AO356_03990 | | nitroreductase | 0.41 | AO356_28725 | | RND transporter | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.28 | Pf6N2E2_2633 | | Nitroreductase family protein | 0.41 | Pf6N2E2_1660 | | RND efflux system, membrane fusion protein CmeA | low | > 103 |
| Pseudomonas simiae WCS417 | 0.27 | PS417_22730 | | nitroreductase | 0.41 | PS417_12590 | | RND transporter | — | — |
| Pseudomonas sp. S08-1 | 0.27 | OH686_20760 | | Putative NAD(P)H nitroreductase YdjA | 0.40 | OH686_16045 | | Multidrug efflux system, membrane fusion component | low | > 80 |
| Shewanella oneidensis MR-1 | 0.27 | SO2708 | | nitroreductase family protein (NCBI ptt file) | 0.39 | SO4693 | | multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) | low | > 76 |
| Pseudomonas syringae pv. syringae B728a | 0.27 | Psyr_3592 | | Nitroreductase | 0.40 | Psyr_4007 | | Secretion protein HlyD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.27 | Psyr_3592 | | Nitroreductase | 0.40 | Psyr_4007 | | Secretion protein HlyD | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.27 | GFF3484 | | FIG002003: Protein YdjA | 0.38 | GFF2117 | | RND efflux system, membrane fusion protein CmeA | low | > 78 |
| Enterobacter asburiae PDN3 | 0.27 | EX28DRAFT_1766 | | Nitroreductase | 0.39 | EX28DRAFT_3318 | | RND family efflux transporter, MFP subunit | low | > 76 |
| Pseudomonas sp. RS175 | 0.27 | PFR28_00799 | | Putative NAD(P)H nitroreductase YdjA | 0.40 | PFR28_02462 | | Multidrug resistance protein MexA | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS24370 | | NAD(P)H nitroreductase | 0.41 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS24370 | | NAD(P)H nitroreductase | 0.41 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Klebsiella michiganensis M5al | 0.26 | BWI76_RS11590 | | NAD(P)H nitroreductase | 0.39 | BWI76_RS25580 | | MexX family efflux pump subunit | — | — |
| Escherichia coli ECRC101 | 0.26 | MCAODC_18590 | ydjA | NAD(P)H nitroreductase | 0.38 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.26 | OHPLBJKB_01967 | | Putative NAD(P)H nitroreductase YdjA | 0.38 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | low | > 73 |
| Escherichia fergusonii Becca | 0.26 | EFB2_02229 | | Putative NAD(P)H nitroreductase YdjA | 0.39 | EFB2_00559 | | Multidrug export protein AcrE | low | > 86 |
| Escherichia coli ECOR38 | 0.26 | HEPCGN_05190 | ydjA | NAD(P)H nitroreductase | 0.38 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 85 |
| Escherichia coli BL21 | 0.26 | ECD_01734 | | putative oxidoreductase | 0.38 | ECD_00414 | | multidrug efflux system | — | — |
| Escherichia coli ECRC102 | 0.26 | NIAGMN_01245 | ydjA | NAD(P)H nitroreductase | 0.38 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli Nissle 1917 | 0.26 | ECOLIN_RS09845 | | NAD(P)H nitroreductase | 0.38 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECRC99 | 0.26 | KEDOAH_01290 | ydjA | NAD(P)H nitroreductase | 0.38 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECRC101 | 0.26 | OKFHMN_26820 | ydjA | NAD(P)H nitroreductase | 0.38 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Shewanella loihica PV-4 | 0.26 | Shew_1740 | | nitroreductase (RefSeq) | 0.38 | Shew_0031 | | RND family efflux transporter MFP subunit (RefSeq) | — | — |
| Escherichia coli ECRC98 | 0.26 | JDDGAC_01395 | ydjA | NAD(P)H nitroreductase | 0.38 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_17330 | ydjA | NAD(P)H nitroreductase | 0.38 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli BW25113 | 0.26 | b1765 | ydjA | predicted oxidoreductase (NCBI) | 0.38 | b0463 | acrA | multidrug efflux system (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.26 | BNILDI_16115 | ydjA | NAD(P)H nitroreductase | 0.38 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Enterobacter sp. TBS_079 | 0.26 | MPMX20_01851 | | Putative NAD(P)H nitroreductase YdjA | 0.39 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | low | > 85 |
| Variovorax sp. SCN45 | 0.26 | GFF205 | | Nitroreductase family protein | 0.39 | GFF3726 | | RND efflux system, membrane fusion protein | low | > 127 |
| Pantoea sp. MT58 | 0.25 | IAI47_08975 | | NAD(P)H nitroreductase | 0.43 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.25 | Psest_1881 | | Nitroreductase | 0.40 | Psest_0309 | | RND family efflux transporter, MFP subunit | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.25 | Pf1N1B4_3544 | | Nitroreductase family protein | 0.40 | Pf1N1B4_4773 | | RND efflux system, membrane fusion protein CmeA | — | — |
| Azospirillum brasilense Sp245 | 0.25 | AZOBR_RS29250 | | oxidoreductase | 0.37 | AZOBR_RS30180 | | hemolysin D | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.24 | PfGW456L13_4412 | | Nitroreductase family protein | 0.41 | PfGW456L13_2955 | | RND efflux system, membrane fusion protein CmeA | low | > 87 |
| Castellaniella sp019104865 MT123 | 0.24 | ABCV34_RS04210 | | nitroreductase | 0.31 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | low | > 48 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.24 | H281DRAFT_04933 | | Nitroreductase | 0.35 | H281DRAFT_01000 | | membrane fusion protein, multidrug efflux system | low | > 103 |
| Shewanella amazonensis SB2B | 0.24 | Sama_1457 | | nitroreductase family protein (RefSeq) | 0.40 | Sama_3553 | | multidrug resistance protein AcrA/AcrE family (RefSeq) | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.24 | LU632_RS12965 | | NAD(P)H nitroreductase | 0.40 | LU632_RS18180 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Dickeya dianthicola 67-19 | 0.23 | HGI48_RS10305 | | NAD(P)H nitroreductase | 0.39 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | low | > 71 |
| Pseudomonas fluorescens FW300-N2E3 | 0.23 | AO353_18485 | | nitroreductase | 0.41 | AO353_26840 | | RND transporter | low | > 101 |
| Serratia liquefaciens MT49 | 0.23 | IAI46_14320 | | NAD(P)H nitroreductase | 0.41 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | low | > 86 |
| Dickeya dianthicola ME23 | 0.23 | DZA65_RS10780 | | NAD(P)H nitroreductase | 0.39 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Dickeya dadantii 3937 | 0.22 | DDA3937_RS10295 | | NAD(P)H nitroreductase | 0.41 | DDA3937_RS05740 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Rahnella sp. WP5 | 0.22 | EX31_RS06310 | | NAD(P)H nitroreductase | 0.40 | EX31_RS22475 | | efflux RND transporter periplasmic adaptor subunit | low | > 89 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.21 | GFF5438 | | Nitroreductase family protein | 0.38 | GFF3839 | | RND efflux system, membrane fusion protein CmeA | low | > 90 |
| Alteromonas macleodii MIT1002 | 0.21 | MIT1002_01842 | | Putative NAD(P)H nitroreductase YdjA | 0.35 | MIT1002_00134 | | Acriflavine resistance protein A precursor | low | > 70 |
| Acidovorax sp. GW101-3H11 | 0.21 | Ac3H11_4500 | | nitroreductase | 0.36 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | — | — |
| Pectobacterium carotovorum WPP14 | 0.19 | HER17_RS11100 | | NAD(P)H nitroreductase | 0.36 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Acinetobacter radioresistens SK82 | 0.18 | MPMX26_01115 | | Putative NAD(P)H nitroreductase YdjA | 0.34 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | low | > 36 |
Not shown: 9 genomes with orthologs for SMc01012 only; 16 genomes with orthologs for SMc02868 only