| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMa2355 | | DNA polymerase IV | 1.0 | SMc01147 | | coproporphyrinogen III oxidase | 0.30 | 18 |
| Rhizobium sp. OAE497 | 0.67 | ABIE40_RS27830 | | DNA polymerase IV | 0.85 | ABIE40_RS01625 | | radical SAM family heme chaperone HemW | — | — |
| Agrobacterium fabrum C58 | 0.66 | Atu5469 | | DNA polymerase IV | 0.84 | Atu0325 | | oxygen-independent coproporphyrinogen III oxidase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.59 | A4249_RS05230 | | DNA polymerase IV | 0.35 | A4249_RS12445 | | radical SAM family heme chaperone HemW | low | > 48 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.51 | CA264_08955 | | DNA polymerase IV | 0.23 | CA264_16765 | | coproporphyrinogen III oxidase | low | > 74 |
| Phocaeicola vulgatus CL09T03C04 | 0.49 | HMPREF1058_RS13990 | | DNA polymerase IV | 0.24 | HMPREF1058_RS07680 | | radical SAM family heme chaperone HemW | low | > 67 |
| Bacteroides ovatus ATCC 8483 | 0.49 | BACOVA_05231 | | putative DNA polymerase IV | 0.21 | BACOVA_03177 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 94 |
| Phocaeicola dorei CL03T12C01 | 0.48 | ABI39_RS09595 | | DNA polymerase IV | 0.24 | ABI39_RS00100 | | radical SAM family heme chaperone HemW | low | > 72 |
| Parabacteroides merdae CL09T00C40 | 0.48 | HMPREF1078_RS15010 | | DNA polymerase IV | 0.26 | HMPREF1078_RS11035 | | radical SAM family heme chaperone HemW | low | > 61 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.48 | ABZR88_RS20685 | | DNA polymerase IV | 0.23 | ABZR88_RS03545 | | radical SAM family heme chaperone HemW | low | > 71 |
| Bacteroides stercoris CC31F | 0.47 | HMPREF1181_RS13945 | | DNA polymerase IV | 0.25 | HMPREF1181_RS06440 | | radical SAM family heme chaperone HemW | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.46 | BT4409 | | DNA damage-inducible protein (NCBI ptt file) | 0.24 | BT2168 | | coproporphyrinogen III oxidase (NCBI ptt file) | 0.24 | 13 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.45 | CA265_RS24610 | | DNA polymerase IV | 0.22 | CA265_RS18155 | | coproporphyrinogen III oxidase | low | > 88 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.4535.1 | | DNA polymerase IV (EC 2.7.7.7) | 0.29 | Xcc-8004.1224.1 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.41 | LRK55_RS11065 | | DNA polymerase IV | 0.28 | LRK55_RS11460 | | radical SAM family heme chaperone HemW | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS11335 | | DNA polymerase IV | 0.28 | LRK54_RS11735 | | radical SAM family heme chaperone HemW | low | > 59 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS08465 | | DNA polymerase IV | 0.28 | ABIE51_RS17300 | | radical SAM family heme chaperone HemW | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.39 | ABZR86_RS12255 | | DNA polymerase IV | 0.28 | ABZR86_RS11910 | | radical SAM family heme chaperone HemW | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.38 | OKGIIK_12560 | dinB | DNA polymerase IV | 0.27 | OKGIIK_12160 | hemW | radical SAM family heme chaperone HemW | low | > 52 |
| Pectobacterium carotovorum WPP14 | 0.38 | HER17_RS04670 | | DNA polymerase IV | 0.28 | HER17_RS03785 | | radical SAM family heme chaperone HemW | low | > 75 |
| Pseudomonas sp. S08-1 | 0.37 | OH686_18925 | | DNA polymerase IV | 0.29 | OH686_11020 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | low | > 80 |
| Pseudomonas putida KT2440 | 0.37 | PP_1203 | | DNA polymerase IV | 0.27 | PP_5101 | | coproporphyrinogen/heterocyclic compound oxidase (aerobic) | low | > 96 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_00130 | | DNA polymerase IV | 0.25 | MPMX26_00308 | | Heme chaperone HemW | low | > 36 |
| Kangiella aquimarina DSM 16071 | 0.37 | B158DRAFT_1563 | | Nucleotidyltransferase/DNA polymerase involved in DNA repair | 0.25 | B158DRAFT_0201 | | coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) | low | > 40 |
| Dickeya dadantii 3937 | 0.37 | DDA3937_RS16575 | | DNA polymerase IV | 0.30 | DDA3937_RS17325 | | radical SAM family heme chaperone HemW | low | > 74 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.37 | Psyr_1397 | | DNA-directed DNA polymerase | 0.28 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.37 | Psyr_1397 | | DNA-directed DNA polymerase | 0.28 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | low | > 86 |
| Shewanella amazonensis SB2B | 0.37 | Sama_2527 | | DNA polymerase IV (RefSeq) | 0.28 | Sama_2483 | | oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) | low | > 62 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_2974 | | DNA polymerase IV (EC 2.7.7.7) | 0.28 | Pf6N2E2_4593 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS24490 | | DNA polymerase IV | 0.29 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | low | > 109 |
| Pseudomonas sp. RS175 | 0.36 | PFR28_00492 | | DNA polymerase IV | 0.28 | PFR28_04249 | | Heme chaperone HemW | low | > 88 |
| Pseudomonas simiae WCS417 | 0.36 | PS417_22830 | | DNA polymerase IV | 0.28 | PS417_26760 | | oxidase | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS24490 | | DNA polymerase IV | 0.29 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | low | > 109 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.36 | OHPLBJKB_03407 | | DNA polymerase IV | 0.28 | OHPLBJKB_00761 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR | low | > 73 |
| Escherichia coli ECRC62 | 0.36 | BNILDI_00290 | dinB | DNA polymerase IV | 0.28 | BNILDI_09685 | hemW | radical SAM family heme chaperone HemW | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.36 | Pf1N1B4_3165 | | DNA polymerase IV (EC 2.7.7.7) | 0.28 | Pf1N1B4_2334 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_05570 | | DNA polymerase IV | 0.28 | AO356_13390 | | coproporphyrinogen III oxidase | low | > 104 |
| Escherichia coli ECOR38 | 0.36 | HEPCGN_07825 | dinB | DNA polymerase IV | 0.28 | HEPCGN_18540 | hemW | radical SAM family heme chaperone HemW | low | > 85 |
| Pseudomonas fluorescens FW300-N2E3 | 0.36 | AO353_16910 | | DNA polymerase IV | 0.29 | AO353_08200 | | coproporphyrinogen III oxidase | low | > 101 |
| Escherichia coli BL21 | 0.36 | ECD_00226 | | DNA polymerase IV | 0.28 | ECD_02785 | | HemN family putative oxidoreductase | low | > 60 |
| Escherichia fergusonii Becca | 0.36 | EFB2_03787 | | DNA polymerase IV | 0.28 | EFB2_00947 | | Heme chaperone HemW | low | > 86 |
| Shewanella loihica PV-4 | 0.36 | Shew_2871 | | DNA polymerase IV (RefSeq) | 0.29 | Shew_1131 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | low | > 60 |
| Escherichia coli BW25113 | 0.36 | b0231 | dinB | DNA polymerase IV (NCBI) | 0.28 | b2955 | yggW | coproporphyrinogen III oxidase (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_02095 | dinB | DNA polymerase IV | 0.28 | NOLOHH_11105 | hemW | radical SAM family heme chaperone HemW | low | > 57 |
| Escherichia coli Nissle 1917 | 0.36 | ECOLIN_RS01780 | | DNA polymerase IV | 0.28 | ECOLIN_RS16435 | | radical SAM family heme chaperone HemW | low | > 52 |
| Dickeya dianthicola ME23 | 0.36 | DZA65_RS17735 | | DNA polymerase IV | 0.30 | DZA65_RS18460 | | radical SAM family heme chaperone HemW | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.36 | MIT1002_03478 | | DNA polymerase IV | 0.29 | MIT1002_00939 | | Oxygen-independent coproporphyrinogen-III oxidase 1 | low | > 70 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_04405 | | DNA polymerase IV | 0.30 | IAI46_21435 | | radical SAM family heme chaperone HemW | low | > 86 |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS16645 | | DNA polymerase IV | 0.30 | HGI48_RS17370 | | radical SAM family heme chaperone HemW | low | > 71 |
| Escherichia coli ECRC99 | 0.36 | KEDOAH_18425 | dinB | DNA polymerase IV | 0.28 | KEDOAH_08905 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECRC98 | 0.36 | JDDGAC_13355 | dinB | DNA polymerase IV | 0.28 | JDDGAC_22865 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECRC101 | 0.36 | MCAODC_00250 | dinB | DNA polymerase IV | 0.28 | MCAODC_09755 | hemW | radical SAM family heme chaperone HemW | — | — |
| Shewanella sp. ANA-3 | 0.36 | Shewana3_0949 | | DNA polymerase IV (RefSeq) | 0.28 | Shewana3_1188 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | low | > 73 |
| Escherichia coli ECRC101 | 0.36 | OKFHMN_09730 | dinB | DNA polymerase IV | 0.28 | OKFHMN_19235 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECRC102 | 0.36 | NIAGMN_07590 | dinB | DNA polymerase IV | 0.28 | NIAGMN_17000 | hemW | radical SAM family heme chaperone HemW | — | — |
| Rahnella sp. WP5 | 0.35 | EX31_RS21005 | | DNA polymerase IV | 0.29 | EX31_RS02710 | | radical SAM family heme chaperone HemW | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_1304 | | Nucleotidyltransferase/DNA polymerase involved in DNA repair | 0.28 | Psest_0276 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 67 |
| Enterobacter asburiae PDN3 | 0.35 | EX28DRAFT_2657 | | Nucleotidyltransferase/DNA polymerase involved in DNA repair | 0.28 | EX28DRAFT_2993 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.35 | CSW01_11635 | | DNA polymerase IV | 0.30 | CSW01_02425 | | YggW family oxidoreductase | low | > 62 |
| Marinobacter adhaerens HP15 | 0.32 | HP15_737 | | DNA polymerase IV | 0.24 | HP15_280 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 73 |
| Paraburkholderia graminis OAS925 | 0.28 | ABIE53_005211 | | DNA polymerase-4 | 0.29 | ABIE53_003236 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 113 |
| Bifidobacterium breve UCC2003 | 0.28 | BBR_RS19045 | | DNA polymerase IV | 0.25 | BBR_RS15235 | | coproporphyrinogen III oxidase | low | > 34 |
| Burkholderia phytofirmans PsJN | 0.27 | BPHYT_RS01275 | | DNA-directed DNA polymerase | 0.29 | BPHYT_RS15335 | | coproporphyrinogen III oxidase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.27 | QEN71_RS08870 | | DNA polymerase IV | 0.29 | QEN71_RS03635 | | radical SAM family heme chaperone HemW | low | > 153 |
| Dechlorosoma suillum PS | 0.26 | Dsui_2075 | | nucleotidyltransferase/DNA polymerase involved in DNA repair | 0.30 | Dsui_0491 | | putative oxygen-independent coproporphyrinogen III oxidase | — | — |
| Variovorax sp. OAS795 | 0.26 | ABID97_RS07995 | | DNA polymerase IV | 0.29 | ABID97_RS23630 | | radical SAM family heme chaperone HemW | low | > 91 |
| Variovorax sp. SCN45 | 0.24 | GFF5999 | | DNA polymerase IV (EC 2.7.7.7) | 0.28 | GFF2383 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | low | > 127 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.23 | H281DRAFT_01439 | | DNA polymerase-4 | 0.29 | H281DRAFT_04010 | | oxygen-independent coproporphyrinogen-3 oxidase | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.16 | Ga0059261_3438 | | Nucleotidyltransferase/DNA polymerase involved in DNA repair | 0.42 | Ga0059261_2753 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 68 |
Not shown: 17 genomes with orthologs for SMa2355 only; 16 genomes with orthologs for SMc01147 only