| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc03006 | | chemotaxis regulator protein | 1.0 | SMc00994 | | transcriptional regulator | 0.20 | 20 |
| Agrobacterium fabrum C58 | 0.94 | Atu0516 | | chemotaxis receiver protein | 0.59 | Atu3153 | | AraC family transcriptional regulator | low | > 89 |
| Sphingomonas koreensis DSMZ 15582 | 0.56 | Ga0059261_1121 | | Response regulator receiver domain | 0.37 | Ga0059261_2613 | | AraC-type DNA-binding domain-containing proteins | — | — |
| Azospirillum sp. SherDot2 | 0.53 | MPMX19_01947 | | Chemotaxis protein CheY | 0.37 | MPMX19_03575 | | HTH-type transcriptional regulator NimR | low | > 112 |
| Azospirillum brasilense Sp245 | 0.52 | AZOBR_RS14225 | | Fis family transcriptional regulator | 0.39 | AZOBR_RS17100 | | AraC family transcriptional regulator | — | — |
| Dechlorosoma suillum PS | 0.52 | Dsui_1707 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | 0.27 | Dsui_2181 | | DNA-binding domain-containing protein, AraC-type | low | > 51 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_19555 | | response regulator | 0.18 | CSW01_15280 | | AraC family transcriptional regulator | low | > 62 |
| Desulfovibrio vulgaris Miyazaki F | 0.50 | DvMF_0468 | | response regulator receiver protein (RefSeq) | 0.25 | DvMF_0808 | | transcriptional regulator, AraC family (RefSeq) | low | > 51 |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_0659 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.22 | Psest_4208 | | AraC-type DNA-binding domain-containing proteins | — | — |
| Rhodospirillum rubrum S1H | 0.49 | Rru_A1398 | | Response regulator receiver domain protein (CheY) (NCBI) | 0.32 | Rru_A0140 | | Transcriptional Regulator, AraC family (NCBI) | 0.45 | 57 |
| Shewanella oneidensis MR-1 | 0.48 | SO2318 | cheY-2 | chemotaxis protein CheY (NCBI ptt file) | 0.19 | SO3488 | | transcriptional regulator, AraC/XylS family (NCBI ptt file) | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS14960 | | Fis family transcriptional regulator | 0.31 | HSERO_RS08365 | | AraC family transcriptional regulator | low | > 78 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_02510 | | Chemotaxis protein CheY | 0.31 | PFR28_03295 | | HTH-type transcriptional regulator NimR | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_22680 | | chemotaxis protein CheY | 0.33 | AO356_18610 | | AraC family transcriptional regulator | 0.25 | 88 |
| Shewanella loihica PV-4 | 0.47 | Shew_0114 | | response regulator receiver protein (RefSeq) | 0.28 | Shew_2711 | | AraC family transcriptional regulator (RefSeq) | low | > 60 |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_420 | | Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY | 0.35 | Pf6N2E2_5650 | | Transcriptional regulator, AraC family | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS25000 | | response regulator | 0.30 | PFLU_RS12030 | | helix-turn-helix transcriptional regulator | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_0788 | | Response regulator receiver | 0.24 | Psyr_0649 | | transcriptional regulator, AraC family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_0788 | | Response regulator receiver | 0.24 | Psyr_0649 | | transcriptional regulator, AraC family | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS25000 | | response regulator | 0.30 | PFLU_RS12030 | | helix-turn-helix transcriptional regulator | low | > 109 |
| Shewanella amazonensis SB2B | 0.46 | Sama_3494 | | response regulator receiver protein (RefSeq) | 0.15 | Sama_3308 | | AraC-type DNA-binding domain-containing protein (RefSeq) | low | > 62 |
| Rhodopseudomonas palustris CGA009 | 0.46 | TX73_000735 | | response regulator | 0.28 | TX73_024245 | | helix-turn-helix transcriptional regulator | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS22235 | | response regulator | 0.36 | ABZR86_RS07475 | | helix-turn-helix transcriptional regulator | low | > 74 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF1475 | | Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY | 0.26 | GFF5680 | | Transcriptional regulator, AraC family | — | — |
| Shewanella sp. ANA-3 | 0.45 | Shewana3_2219 | | response regulator receiver protein (RefSeq) | 0.20 | Shewana3_1923 | | AraC family transcriptional regulator (RefSeq) | low | > 73 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_05741 | | two-component system, chemotaxis family, response regulator CheY | 0.28 | H281DRAFT_00574 | | transcriptional regulator, AraC family | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS29015 | | response regulator | 0.27 | QEN71_RS06235 | | helix-turn-helix transcriptional regulator | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_000126 | | two-component system chemotaxis response regulator CheY | 0.27 | ABIE53_002542 | | AraC-like DNA-binding protein/quercetin dioxygenase-like cupin family protein | low | > 113 |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS23925 | | response regulator | 0.25 | RS_RS15385 | | AraC family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS06260 | | response regulator | 0.26 | RPSI07_RS09805 | | AraC family transcriptional regulator | — | — |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS17955 | | response regulator | 0.25 | ABZR87_RS03090 | | helix-turn-helix transcriptional regulator | — | — |
| Variovorax sp. OAS795 | 0.37 | ABID97_RS24705 | | response regulator | 0.22 | ABID97_RS28450 | | helix-turn-helix transcriptional regulator | low | > 91 |
| Variovorax sp. SCN45 | 0.36 | GFF2151 | | twitching motility protein PilG | 0.33 | GFF3729 | | Transcriptional regulator, AraC family | low | > 127 |
| Ralstonia solanacearum UW163 | 0.36 | UW163_RS21765 | | response regulator | 0.25 | UW163_RS06175 | | AraC family transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.36 | RALBFv3_RS17385 | | response regulator | 0.25 | RALBFv3_RS07445 | | AraC family transcriptional regulator | low | > 76 |
| Pseudomonas putida KT2440 | 0.36 | PP_4992 | | Protein PilG | 0.28 | PP_2365 | | Transcriptional regulator, AraC family | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.35 | PfGW456L13_1022 | | twitching motility protein PilG | 0.28 | PfGW456L13_3596 | | Transcriptional regulator, AraC family | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_3627 | | Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY | 0.35 | Pf1N1B4_3420 | | Transcriptional regulator, AraC family | low | > 87 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_19690 | | histidine kinase | 0.30 | PS417_11450 | | AraC family transcriptional regulator | low | > 88 |
| Serratia liquefaciens MT49 | 0.35 | IAI46_16010 | | chemotaxis response regulator CheY | 0.34 | IAI46_22565 | | helix-turn-helix transcriptional regulator | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_08105 | | pilus assembly protein PilG | 0.32 | AO353_05765 | | AraC family transcriptional regulator | low | > 101 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.35 | GFF1663 | | Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY | 0.16 | GFF3466 | | Transcriptional regulator, AraC family | low | > 78 |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS14050 | | chemotaxis protein CheY | 0.22 | DZA65_RS08670 | | helix-turn-helix transcriptional regulator | low | > 75 |
| Pantoea sp. MT58 | 0.34 | IAI47_08335 | | chemotaxis response regulator CheY | 0.25 | IAI47_10240 | | helix-turn-helix transcriptional regulator | low | > 76 |
| Escherichia coli ECRC98 | 0.34 | JDDGAC_00730 | cheY | chemotaxis regulatory protein CheY | 0.20 | JDDGAC_01255 | nimR | DNA-binding transcriptional regulator NimR | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.34 | OHPLBJKB_01846 | | Chemotaxis protein CheY | 0.20 | OHPLBJKB_01943 | | HTH-type transcriptional regulator NimR | low | > 73 |
| Escherichia coli ECOR27 | 0.34 | NOLOHH_16595 | cheY | chemotaxis regulatory protein CheY | 0.20 | NOLOHH_17210 | nimR | DNA-binding transcriptional regulator NimR | — | — |
| Escherichia coli ECRC62 | 0.34 | BNILDI_15385 | cheY | chemotaxis regulatory protein CheY | 0.20 | BNILDI_15995 | nimR | DNA-binding transcriptional regulator NimR | — | — |
| Escherichia coli BL21 | 0.34 | ECD_01853 | | chemotaxis regulator transmitting signal to flagellar motor component | 0.20 | ECD_01759 | | putative DNA-binding transcriptional regulator | — | — |
| Escherichia coli ECRC101 | 0.34 | MCAODC_19250 | cheY | chemotaxis regulatory protein CheY | 0.20 | MCAODC_18730 | nimR | DNA-binding transcriptional regulator NimR | — | — |
| Escherichia coli ECRC102 | 0.34 | NIAGMN_01905 | cheY | chemotaxis regulatory protein CheY | 0.20 | NIAGMN_01385 | nimR | DNA-binding transcriptional regulator NimR | — | — |
| Escherichia coli ECRC101 | 0.34 | OKFHMN_26155 | cheY | chemotaxis regulatory protein CheY | 0.20 | OKFHMN_26680 | nimR | DNA-binding transcriptional regulator NimR | — | — |
| Escherichia coli BW25113 | 0.34 | b1882 | cheY | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | 0.20 | b1790 | yeaM | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.34 | KEDOAH_01950 | cheY | chemotaxis regulatory protein CheY | 0.20 | KEDOAH_01430 | nimR | DNA-binding transcriptional regulator NimR | — | — |
| Rahnella sp. WP5 | 0.34 | EX31_RS11355 | | chemotaxis protein CheY | 0.22 | EX31_RS24135 | | AraC family transcriptional regulator | low | > 89 |
| Escherichia fergusonii Becca | 0.34 | EFB2_02061 | | Chemotaxis protein CheY | 0.20 | EFB2_02205 | | HTH-type transcriptional regulator NimR | low | > 86 |
| Escherichia coli Nissle 1917 | 0.34 | ECOLIN_RS10750 | | chemotaxis response regulator CheY | 0.20 | ECOLIN_RS09975 | | DNA-binding transcriptional regulator NimR | — | — |
| Escherichia coli ECOR38 | 0.34 | HEPCGN_04575 | cheY | chemotaxis regulatory protein CheY | 0.20 | HEPCGN_05070 | nimR | DNA-binding transcriptional regulator NimR | low | > 85 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_02786 | | Chemotaxis protein CheY | 0.26 | MPMX20_01145 | | HTH-type transcriptional regulator NimR | low | > 85 |
Not shown: 17 genomes with orthologs for SMc03006 only; 9 genomes with orthologs for SMc00994 only