| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS19740 | | 16S rRNA methyltransferase | 1.0 | RR42_RS13165 | | membrane protein | 0.39 | 3 |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS05115 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.75 | UW163_RS12715 | | BAX inhibitor (BI)-1/YccA family protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS08495 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.75 | RALBFv3_RS15250 | | BAX inhibitor (BI)-1/YccA family protein | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS08730 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.77 | RPSI07_RS18125 | | BAX inhibitor (BI)-1/YccA family protein | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS03815 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.77 | ABZR87_RS10890 | | Bax inhibitor-1/YccA family protein | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.61 | RS_RS16360 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.78 | RS_RS06060 | | BAX inhibitor (BI)-1/YccA family protein | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.54 | QEN71_RS00655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.72 | QEN71_RS05955 | | Bax inhibitor-1/YccA family protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS01940 | | 16S rRNA methyltransferase | 0.73 | BPHYT_RS12600 | | membrane protein | — | — |
| Herbaspirillum seropedicae SmR1 | 0.52 | HSERO_RS23345 | | 16S rRNA methyltransferase | 0.71 | HSERO_RS14820 | | membrane protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_02152 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | 0.73 | H281DRAFT_00512 | | hypothetical protein | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.50 | ABIE53_000470 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | 0.73 | ABIE53_002746 | | modulator of FtsH protease | 0.62 | 2 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS00285 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.58 | ABID97_RS10740 | | Bax inhibitor-1/YccA family protein | low | > 91 |
| Variovorax sp. SCN45 | 0.44 | GFF3735 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) | 0.60 | GFF2444 | | Integral membrane protein, interacts with FtsH | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS14320 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.57 | ABCV34_RS08305 | | Bax inhibitor-1 family protein | — | — |
| Dechlorosoma suillum PS | 0.42 | Dsui_0251 | | putative S-adenosylmethionine-dependent methyltransferase, YraL family | 0.59 | Dsui_2145 | | FtsH-interacting integral membrane protein | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_4466 | | rRNA small subunit methyltransferase I | 0.57 | Ac3H11_2845 | | Integral membrane protein, interacts with FtsH | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF2715 | | rRNA small subunit methyltransferase I | 0.57 | GFF2662 | | Putative TEGT family carrier/transport protein | low | > 90 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3270 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | 0.24 | Psest_2372 | | Integral membrane protein, interacts with FtsH | low | > 67 |
| Shewanella loihica PV-4 | 0.41 | Shew_0228 | | uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) | 0.24 | Shew_2014 | | hypothetical protein (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_554 | | tetrapyrrole methylase family protein | 0.21 | HP15_1784 | | protein belonging to uncharacterized protein family UPF0005 | 0.59 | 6 |
| Vibrio cholerae E7946 ATCC 55056 | 0.41 | CSW01_03090 | | rRNA (cytidine-2'-O-)-methyltransferase | 0.27 | CSW01_06835 | | BAX inhibitor protein | low | > 62 |
| Escherichia fergusonii Becca | 0.40 | EFB2_00677 | | Ribosomal RNA small subunit methyltransferase I | 0.28 | EFB2_03101 | | Modulator of FtsH protease YccA | low | > 86 |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_17110 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.28 | HEPCGN_23350 | yccA | FtsH protease modulator YccA | low | > 87 |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS18085 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.28 | ECOLIN_RS05100 | | FtsH protease modulator YccA | low | > 55 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_17110 | | methyltransferase | 0.24 | AO356_25955 | | hypothetical protein | low | > 104 |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_4112 | | Protein of unknown function UPF0011 | 0.23 | Psyr_3164 | | Protein of unknown function UPF0005 | 0.53 | 6 |
| Escherichia coli BW25113 | 0.40 | b3146 | yraL | predicted methyltransferase (NCBI) | 0.28 | b0970 | yccA | inner membrane protein (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.40 | ECD_03013 | | 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent | 0.28 | ECD_00974 | | Modulator of FtsH protease, inner membrane protein | 0.52 | 55 |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_09915 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.27 | KEDOAH_22565 | yccA | FtsH protease modulator YccA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_4112 | | Protein of unknown function UPF0011 | 0.23 | Psyr_3164 | | Protein of unknown function UPF0005 | low | > 86 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_21860 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.27 | JDDGAC_08780 | yccA | FtsH protease modulator YccA | low | > 86 |
| Escherichia coli ECRC101 | 0.40 | MCAODC_08755 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.27 | MCAODC_24560 | yccA | FtsH protease modulator YccA | low | > 87 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_01495 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.28 | BNILDI_19890 | yccA | FtsH protease modulator YccA | low | > 75 |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_18235 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.27 | OKFHMN_05170 | yccA | FtsH protease modulator YccA | low | > 80 |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_10035 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.28 | NOLOHH_21725 | yccA | FtsH protease modulator YccA | low | > 75 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_15995 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.27 | NIAGMN_02890 | yccA | FtsH protease modulator YccA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_00555 | | Ribosomal RNA small subunit methyltransferase I | 0.28 | OHPLBJKB_02696 | | Modulator of FtsH protease YccA | low | > 73 |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_3879 | | hypothetical protein (RefSeq) | 0.25 | Shewana3_2060 | | hypothetical protein (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.40 | LU632_RS02230 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.26 | LU632_RS10105 | yccA | FtsH protease modulator YccA | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_5346 | | rRNA small subunit methyltransferase I | 0.25 | Pf6N2E2_1239 | | Putative TEGT family carrier/transport protein | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.24 | PFLU_RS18360 | | Bax inhibitor-1/YccA family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.24 | PFLU_RS18360 | | Bax inhibitor-1/YccA family protein | 0.26 | 103 |
| Shewanella oneidensis MR-1 | 0.39 | SO0301 | | hypothetical methyltransferase (NCBI ptt file) | 0.25 | SO2375 | | membrane protein, putative (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_953 | | rRNA small subunit methyltransferase I | 0.23 | Pf1N1B4_5690 | | Putative TEGT family carrier/transport protein | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF1521 | | rRNA small subunit methyltransferase I | 0.26 | GFF3263 | | Putative TEGT family carrier/transport protein | low | > 78 |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_15290 | | methyltransferase | 0.23 | AO353_22655 | | hypothetical protein | 0.42 | 32 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_04590 | | methyltransferase | 0.24 | PS417_16310 | | membrane protein | 0.28 | 86 |
| Pseudomonas sp. RS175 | 0.38 | PFR28_03597 | | Ribosomal RNA small subunit methyltransferase I | 0.24 | PFR28_02158 | | Modulator of FtsH protease YccA | low | > 88 |
| Dickeya dianthicola 67-19 | 0.38 | HGI48_RS01610 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.25 | HGI48_RS15260 | | FtsH protease modulator YccA | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.38 | HER17_RS19860 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.27 | HER17_RS08480 | | FtsH protease modulator YccA | low | > 75 |
| Dickeya dadantii 3937 | 0.38 | DDA3937_RS01715 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.25 | DDA3937_RS15185 | | FtsH protease modulator YccA | low | > 74 |
| Pseudomonas putida KT2440 | 0.38 | PP_1326 | | 16S rRNA 2'-O-ribose C1402 methyltransferase | 0.24 | PP_3990 | | substrate or modulator of FtsH-mediated proteolysis | low | > 96 |
| Dickeya dianthicola ME23 | 0.38 | DZA65_RS01685 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.25 | DZA65_RS16085 | | FtsH protease modulator YccA | low | > 75 |
| Shewanella amazonensis SB2B | 0.38 | Sama_3353 | | hypothetical protein (RefSeq) | 0.26 | Sama_1782 | | hypothetical protein (RefSeq) | low | > 62 |
| Pseudomonas sp. S08-1 | 0.37 | OH686_08340 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.25 | OH686_00320 | | Putative TEGT family carrier/transport protein | low | > 80 |
| Enterobacter asburiae PDN3 | 0.37 | EX28DRAFT_3195 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.24 | EX28DRAFT_1964 | | Integral membrane protein, interacts with FtsH | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.37 | PfGW456L13_1643 | | rRNA small subunit methyltransferase I | 0.24 | PfGW456L13_2798 | | Putative TEGT family carrier/transport protein | 0.34 | 13 |
| Klebsiella michiganensis M5al | 0.37 | BWI76_RS24910 | | rRNA (cytidine-2'-O-)-methyltransferase | 0.28 | BWI76_RS10070 | | BAX inhibitor protein | low | > 92 |
| Pantoea sp. MT58 | 0.37 | IAI47_02850 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.24 | IAI47_12580 | | FtsH protease modulator YccA | low | > 76 |
| Enterobacter sp. TBS_079 | 0.37 | MPMX20_04050 | | Ribosomal RNA small subunit methyltransferase I | 0.26 | MPMX20_01622 | | Modulator of FtsH protease YccA | low | > 85 |
| Rahnella sp. WP5 | 0.36 | EX31_RS12550 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.23 | EX31_RS17975 | | FtsH protease modulator YccA | low | > 89 |
| Serratia liquefaciens MT49 | 0.35 | IAI46_22295 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.24 | IAI46_08945 | | FtsH protease modulator YccA | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_03113 | | Ribosomal RNA small subunit methyltransferase I | 0.30 | MIT1002_02167 | | Modulator of FtsH protease YccA | low | > 70 |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS22780 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.12 | AMB_RS21875 | | BAX inhibitor (BI)-1/YccA family protein | — | — |
| Rhizobium sp. OAE497 | 0.31 | ABIE40_RS01370 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.14 | ABIE40_RS20330 | | Bax inhibitor-1/YccA family protein | low | > 107 |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c26730 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | 0.14 | PGA1_c21920 | | Integral membrane protein, interacts with FtsH | — | — |
Not shown: 17 genomes with orthologs for RR42_RS19740 only; 2 genomes with orthologs for RR42_RS13165 only