| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS17675 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 1.0 | RR42_RS04430 | | phosphoglycolate phosphatase | 0.46 | 20 |
| Ralstonia solanacearum PSI07 | 0.79 | RPSI07_RS11275 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.60 | RPSI07_RS19745 | | phosphoglycolate phosphatase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.79 | RS_RS13915 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.60 | RS_RS04460 | | phosphoglycolate phosphatase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.78 | RALBFv3_RS05970 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.60 | RALBFv3_RS13725 | | phosphoglycolate phosphatase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.78 | UW163_RS07655 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.60 | UW163_RS16085 | | phosphoglycolate phosphatase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.78 | ABZR87_RS01630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.59 | ABZR87_RS09415 | | HAD-IA family hydrolase | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.73 | QEN71_RS27145 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | QEN71_RS04040 | | HAD-IA family hydrolase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.72 | H281DRAFT_06288 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.59 | H281DRAFT_03931 | | phosphoglycolate phosphatase | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.72 | ABIE53_003563 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.57 | ABIE53_003164 | | 2-phosphoglycolate phosphatase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.72 | BPHYT_RS16990 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.58 | BPHYT_RS14945 | | phosphoglycolate phosphatase | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.71 | HSERO_RS01965 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.50 | HSERO_RS18455 | | phosphoglycolate phosphatase | low | > 78 |
| Methylophilus sp. DMC18 | 0.69 | GFF2071 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.47 | GFF1235 | | N-acetylmuramic acid 6-phosphate phosphatase | — | — |
| Dechlorosoma suillum PS | 0.67 | Dsui_0384 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.46 | Dsui_1933 | | 2-phosphoglycolate phosphatase | low | > 51 |
| Variovorax sp. SCN45 | 0.61 | GFF4445 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) | 0.48 | GFF6189 | | Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.60 | ABCV34_RS10690 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.47 | ABCV34_RS07135 | | HAD-IA family hydrolase | low | > 48 |
| Pseudomonas simiae WCS417 | 0.59 | PS417_24800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.41 | PS417_08095 | | phosphoglycolate phosphatase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.59 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.41 | PFLU_RS08065 | | N-acetylmuramic acid 6-phosphate phosphatase MupP | 0.32 | 76 |
| Pseudomonas fluorescens SBW25 | 0.59 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.41 | PFLU_RS08065 | | N-acetylmuramic acid 6-phosphate phosphatase MupP | 0.92 | 3 |
| Variovorax sp. OAS795 | 0.59 | ABID97_RS06355 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.47 | ABID97_RS09545 | | HAD-IA family hydrolase | 0.37 | 89 |
| Pseudomonas lactucae CFBP13502 | 0.59 | GEMAOFIL_05114 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.41 | GEMAOFIL_01755 | | N-acetylmuramic acid 6-phosphate phosphatase | low | > 93 |
| Pseudomonas sp. RS175 | 0.59 | PFR28_03883 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.42 | PFR28_00900 | | N-acetylmuramic acid 6-phosphate phosphatase | low | > 88 |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_00168 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.28 | MIT1002_02231 | | Phosphoglycolate phosphatase | low | > 70 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.59 | GFF583 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.45 | GFF5338 | | Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase | — | — |
| Pseudomonas aeruginosa PA14 | 0.59 | IKLFDK_20730 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.44 | IKLFDK_16120 | | N-acetylmuramic acid 6-phosphate phosphatase MupP | low | > 100 |
| Shewanella loihica PV-4 | 0.58 | Shew_3144 | | UDP-N-acetylmuramate (RefSeq) | 0.34 | Shew_1947 | | HAD family hydrolase (RefSeq) | — | — |
| Pseudomonas putida KT2440 | 0.58 | PP_0547 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.42 | PP_1764 | | Phosphoglycolate phosphatase 2 | low | > 96 |
| Shewanella oneidensis MR-1 | 0.58 | SO3805 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) | 0.31 | SO2414 | | phosphoglycolate phosphatase, putative (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N2E2 | 0.58 | Pf6N2E2_4982 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.42 | Pf6N2E2_2526 | | Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase | low | > 103 |
| Pseudomonas sp. S08-1 | 0.58 | OH686_09400 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | OH686_20840 | | phosphoglycolate phosphatase, bacterial | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.58 | AO353_06550 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.41 | AO353_02100 | | phosphoglycolate phosphatase | low | > 101 |
| Pseudomonas sp. BP01 | 0.58 | JOY50_RS23075 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.42 | JOY50_RS16165 | mupP | N-acetylmuramic acid 6-phosphate phosphatase MupP | low | > 84 |
| Pseudomonas sp. DMC3 | 0.58 | GFF3860 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.41 | GFF4683 | | N-acetylmuramic acid 6-phosphate phosphatase | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.58 | PfGW456L13_1344 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.39 | PfGW456L13_2170 | | Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase | low | > 87 |
| Shewanella sp. ANA-3 | 0.58 | Shewana3_0791 | | UDP-N-acetylmuramate (RefSeq) | 0.34 | Shewana3_1970 | | HAD family hydrolase (RefSeq) | low | > 73 |
| Pseudomonas fluorescens FW300-N2C3 | 0.58 | AO356_15235 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.42 | AO356_03495 | | phosphoglycolate phosphatase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.58 | Pf1N1B4_2676 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.43 | Pf1N1B4_357 | | Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.58 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | Psyr_3651 | | 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.58 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | Psyr_3651 | | 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 | — | — |
| Pseudomonas sp. SVBP6 | 0.58 | COO64_RS15685 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.42 | COO64_RS06775 | mupP | N-acetylmuramic acid 6-phosphate phosphatase MupP | low | > 93 |
| Pseudomonas stutzeri RCH2 | 0.58 | Psest_0673 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.42 | Psest_2001 | | 2-phosphoglycolate phosphatase, prokaryotic | low | > 67 |
| Shewanella amazonensis SB2B | 0.57 | Sama_0769 | | UDP-N-acetylmuramate (RefSeq) | 0.31 | Sama_1729 | | phosphoglycolate phosphatase (RefSeq) | low | > 62 |
| Acidovorax sp. GW101-3H11 | 0.54 | Ac3H11_4032 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.49 | Ac3H11_2569 | | Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase | 0.44 | 10 |
| Marinobacter adhaerens HP15 | 0.52 | HP15_616 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.43 | HP15_1226 | | 2-phosphoglycolate phosphatase, prokaryotic | — | — |
| Kangiella aquimarina DSM 16071 | 0.52 | B158DRAFT_2035 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.44 | B158DRAFT_2318 | | 2-phosphoglycolate phosphatase, prokaryotic | low | > 40 |
| Acinetobacter baumannii LAC-4 | 0.50 | RR41_RS18930 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.32 | RR41_RS18730 | | HAD-IA family hydrolase | low | > 55 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS17365 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | ABZR86_RS08775 | | HAD-IA family hydrolase | low | > 74 |
| Rhodanobacter sp000427505 FW510-R12 | 0.49 | LRK53_RS01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.41 | LRK53_RS07485 | | phosphoglycolate phosphatase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_17020 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.43 | OKGIIK_09515 | gph | phosphoglycolate phosphatase | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_03053 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.33 | MPMX26_00033 | | N-acetylmuramic acid 6-phosphate phosphatase | 0.81 | 6 |
| Rhodanobacter denitrificans MT42 | 0.48 | LRK55_RS06355 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.40 | LRK55_RS02215 | | phosphoglycolate phosphatase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.48 | LRK54_RS06610 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.40 | LRK54_RS02460 | | phosphoglycolate phosphatase | low | > 59 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.47 | Xcc-8004.1107.1 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) | 0.40 | Xcc-8004.2290.1 | | Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase | low | > 74 |
| Lysobacter sp. OAE881 | 0.46 | ABIE51_RS17450 | | Mur ligase family protein | 0.41 | ABIE51_RS13485 | | phosphoglycolate phosphatase | low | > 62 |
Not shown: 32 genomes with orthologs for RR42_RS17675 only; 18 genomes with orthologs for RR42_RS04430 only