| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS15885 | | deoxyribodipyrimidine photolyase | 1.0 | RR42_RS02875 | | serine/threonine protein kinase | 0.63 | 19 |
| Ralstonia sp. UNC404CL21Col | 0.71 | ABZR87_RS08600 | | deoxyribodipyrimidine photo-lyase | 0.67 | ABZR87_RS07855 | | serine/threonine protein kinase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.69 | RALBFv3_RS12600 | | deoxyribodipyrimidine photo-lyase | 0.68 | RALBFv3_RS11880 | | serine/threonine protein kinase | 0.36 | 12 |
| Ralstonia solanacearum UW163 | 0.69 | UW163_RS00965 | | deoxyribodipyrimidine photo-lyase | 0.68 | UW163_RS01710 | | serine/threonine protein kinase | — | — |
| Burkholderia phytofirmans PsJN | 0.64 | BPHYT_RS33665 | | deoxyribodipyrimidine photo-lyase | 0.62 | BPHYT_RS01730 | | serine/threonine protein kinase | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.63 | HSERO_RS09280 | | deoxyribodipyrimidine photo-lyase | 0.63 | HSERO_RS07220 | | serine/threonine protein kinase | low | > 78 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_06033 | | deoxyribodipyrimidine photo-lyase type I | 0.62 | H281DRAFT_02190 | | Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_004843 | | deoxyribodipyrimidine photo-lyase | 0.61 | ABIE53_000438 | | Ser/Thr protein kinase RdoA (MazF antagonist) | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.61 | QEN71_RS17830 | | deoxyribodipyrimidine photo-lyase | 0.63 | QEN71_RS00430 | | serine/threonine protein kinase | low | > 153 |
| Variovorax sp. OAS795 | 0.57 | ABID97_RS24680 | | deoxyribodipyrimidine photo-lyase | 0.49 | ABID97_RS00940 | | serine/threonine protein kinase | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF647 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | 0.47 | GFF355 | | YihE protein, required for LPS synthesis | low | > 90 |
| Variovorax sp. SCN45 | 0.55 | GFF2156 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | 0.51 | GFF3567 | | YihE protein, required for LPS synthesis | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.54 | Ac3H11_3983 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | 0.51 | Ac3H11_4649 | | YihE protein, required for LPS synthesis | low | > 79 |
| Dechlorosoma suillum PS | 0.49 | Dsui_0591 | | deoxyribodipyrimidine photolyase | 0.61 | Dsui_2766 | | putative homoserine kinase type II (protein kinase fold) | low | > 51 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.31 | OHPLBJKB_03009 | | Deoxyribodipyrimidine photo-lyase | 0.40 | OHPLBJKB_04194 | | Stress response kinase A | low | > 73 |
| Escherichia coli BW25113 | 0.31 | b0708 | phr | deoxyribodipyrimidine photolyase, FAD-binding (NCBI) | 0.40 | b3859 | yihE | predicted kinase (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.31 | JDDGAC_10680 | phrB | deoxyribodipyrimidine photo-lyase | 0.40 | JDDGAC_17800 | srkA | stress response kinase SrkA | low | > 86 |
| Escherichia coli ECRC102 | 0.31 | NIAGMN_05080 | phrB | deoxyribodipyrimidine photo-lyase | 0.40 | NIAGMN_11930 | srkA | stress response kinase SrkA | — | — |
| Escherichia coli ECRC101 | 0.31 | MCAODC_26245 | phrB | deoxyribodipyrimidine photo-lyase | 0.40 | MCAODC_04675 | srkA | stress response kinase SrkA | low | > 87 |
| Escherichia coli ECRC99 | 0.31 | KEDOAH_20940 | phrB | deoxyribodipyrimidine photo-lyase | 0.40 | KEDOAH_13975 | srkA | stress response kinase SrkA | — | — |
| Escherichia coli ECRC100 | 0.31 | OKFHMN_07025 | phrB | deoxyribodipyrimidine photo-lyase | 0.40 | OKFHMN_14175 | srkA | stress response kinase SrkA | low | > 80 |
| Escherichia coli ECOR27 | 0.30 | NOLOHH_23405 | phrB | deoxyribodipyrimidine photo-lyase | 0.40 | NOLOHH_06305 | srkA | stress response kinase SrkA | low | > 75 |
| Escherichia coli BL21 | 0.30 | ECD_00668 | | deoxyribodipyrimidine photolyase, FAD-binding | 0.40 | ECD_03745 | | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein | low | > 61 |
| Escherichia coli ECRC62 | 0.30 | BNILDI_21400 | phrB | deoxyribodipyrimidine photo-lyase | 0.40 | BNILDI_05225 | srkA | stress response kinase SrkA | low | > 75 |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_01190 | phrB | deoxyribodipyrimidine photo-lyase | 0.39 | HEPCGN_12810 | srkA | stress response kinase SrkA | low | > 87 |
| Vibrio cholerae E7946 ATCC 55056 | 0.30 | CSW01_14320 | | deoxyribodipyrimidine photo-lyase | 0.44 | CSW01_00175 | | serine/threonine protein kinase | low | > 62 |
| Shewanella loihica PV-4 | 0.30 | Shew_1479 | | deoxyribodipyrimidine photo-lyase (RefSeq) | 0.44 | Shew_0264 | | serine/threonine protein kinase (RefSeq) | low | > 60 |
| Klebsiella michiganensis M5al | 0.30 | BWI76_RS08335 | | deoxyribodipyrimidine photo-lyase | 0.40 | BWI76_RS00340 | | stress response kinase A | low | > 92 |
| Escherichia fergusonii Becca | 0.30 | EFB2_03395 | | Deoxyribodipyrimidine photo-lyase | 0.40 | EFB2_04758 | | Stress response kinase A | low | > 86 |
| Escherichia coli Nissle 1917 | 0.30 | ECOLIN_RS03790 | | deoxyribodipyrimidine photo-lyase | 0.40 | ECOLIN_RS22245 | | stress response kinase SrkA | low | > 55 |
| Enterobacter asburiae PDN3 | 0.29 | EX28DRAFT_2278 | | Deoxyribodipyrimidine photolyase | 0.40 | EX28DRAFT_4340 | | Putative homoserine kinase type II (protein kinase fold) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF4612 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | 0.39 | GFF2212 | | YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS14995 | | deoxyribodipyrimidine photo-lyase | 0.40 | HER17_RS21480 | | serine/threonine protein kinase | low | > 75 |
| Enterobacter sp. TBS_079 | 0.29 | MPMX20_01343 | | Deoxyribodipyrimidine photo-lyase | 0.41 | MPMX20_04604 | | Stress response kinase A | low | > 85 |
| Serratia liquefaciens MT49 | 0.29 | IAI46_06200 | | deoxyribodipyrimidine photo-lyase | 0.41 | IAI46_25000 | | serine/threonine protein kinase | low | > 86 |
| Marinobacter adhaerens HP15 | 0.28 | HP15_715 | | deoxyribodipyrimidine photolyase | 0.43 | HP15_2490 | | kinase | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.28 | LU632_RS16155 | phrB | deoxyribodipyrimidine photo-lyase | 0.35 | LU632_RS23880 | | serine/threonine protein kinase | low | > 74 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.27 | Psyr_0961 | | deoxyribodipyrimidine photo-lyase type I | 0.49 | Psyr_4697 | | Aminoglycoside phosphotransferase | low | > 86 |
| Dickeya dianthicola ME23 | 0.27 | DZA65_RS06795 | | deoxyribodipyrimidine photo-lyase | 0.37 | DZA65_RS22245 | | serine/threonine protein kinase | low | > 75 |
| Pseudomonas syringae pv. syringae B728a | 0.27 | Psyr_0961 | | deoxyribodipyrimidine photo-lyase type I | 0.49 | Psyr_4697 | | Aminoglycoside phosphotransferase | low | > 86 |
| Dickeya dianthicola 67-19 | 0.27 | HGI48_RS06450 | | deoxyribodipyrimidine photo-lyase | 0.37 | HGI48_RS21270 | | serine/threonine protein kinase | low | > 71 |
| Pantoea sp. MT58 | 0.27 | IAI47_13815 | | deoxyribodipyrimidine photo-lyase | 0.37 | IAI47_00420 | | serine/threonine protein kinase | low | > 76 |
| Dickeya dadantii 3937 | 0.27 | DDA3937_RS06405 | | deoxyribodipyrimidine photo-lyase | 0.38 | DDA3937_RS00095 | | serine/threonine protein kinase | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.27 | MIT1002_02045 | | Deoxyribodipyrimidine photo-lyase | 0.43 | MIT1002_00718 | | serine/threonine protein kinase | low | > 70 |
| Rahnella sp. WP5 | 0.26 | EX31_RS23365 | | deoxyribodipyrimidine photo-lyase | 0.41 | EX31_RS15915 | | serine/threonine protein kinase | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.26 | AO353_14820 | | deoxyribodipyrimidine photolyase | 0.49 | AO353_07545 | | serine/threonine protein kinase | low | > 101 |
| Shewanella amazonensis SB2B | 0.26 | Sama_0811 | | deoxyribodipyrimidine photo-lyase (RefSeq) | 0.38 | Sama_3322 | | serine/threonine protein kinase (RefSeq) | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.26 | B158DRAFT_0621 | | Deoxyribodipyrimidine photolyase | 0.50 | B158DRAFT_1377 | | Putative homoserine kinase type II (protein kinase fold) | low | > 40 |
| Pseudomonas fluorescens FW300-N2E2 | 0.26 | Pf6N2E2_5228 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | 0.49 | Pf6N2E2_4755 | | YihE protein, required for LPS synthesis | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.26 | AO356_16530 | | deoxyribodipyrimidine photolyase | 0.49 | AO356_14115 | | serine/threonine protein kinase | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.26 | PFLU_RS03715 | | deoxyribodipyrimidine photo-lyase | 0.49 | PFLU_RS27670 | | serine/threonine protein kinase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.26 | PFLU_RS03715 | | deoxyribodipyrimidine photo-lyase | 0.49 | PFLU_RS27670 | | serine/threonine protein kinase | low | > 109 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_03648 | | Deoxyribodipyrimidine photo-lyase | 0.49 | PFR28_04107 | | Serine/threonine protein kinase RdoA | low | > 88 |
| Shewanella oneidensis MR-1 | 0.26 | SO3384 | phrB | deoxyribodipyrimidine photolyase (NCBI ptt file) | 0.44 | SO0332 | | hypothetical kinase (NCBI ptt file) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.26 | Psest_2397 | | Deoxyribodipyrimidine photolyase | 0.50 | Psest_0409 | | Putative homoserine kinase type II (protein kinase fold) | low | > 67 |
| Shewanella sp. ANA-3 | 0.25 | Shewana3_1166 | | deoxyribodipyrimidine photo-lyase type I (RefSeq) | 0.44 | Shewana3_3839 | | serine/threonine protein kinase (RefSeq) | low | > 73 |
| Pseudomonas fluorescens FW300-N1B4 | 0.25 | Pf1N1B4_2927 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | 0.49 | Pf1N1B4_2481 | | YihE protein, required for LPS synthesis | low | > 87 |
| Pseudomonas simiae WCS417 | 0.25 | PS417_03665 | | deoxyribodipyrimidine photolyase | 0.49 | PS417_26025 | | serine/threonine protein kinase | low | > 88 |
| Dyella japonica UNC79MFTsu3.2 | 0.25 | ABZR86_RS01855 | | deoxyribodipyrimidine photo-lyase | 0.44 | ABZR86_RS16915 | | serine/threonine protein kinase | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.25 | OKGIIK_13930 | | Deoxyribodipyrimidine photolyase | 0.43 | OKGIIK_16730 | srkA | serine/threonine protein kinase | low | > 52 |
| Pseudomonas putida KT2440 | 0.25 | PP_0739 | | deoxyribodipyrimidine photolyase | 0.50 | PP_0359 | | serine/threonine protein kinase | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.24 | PfGW456L13_1589 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | 0.48 | PfGW456L13_1143 | | YihE protein, required for LPS synthesis | low | > 87 |
| Pseudomonas sp. S08-1 | 0.24 | OH686_07850 | | Deoxyribodipyrimidine photolyase | 0.49 | OH686_10380 | | YihE protein, required for LPS synthesis | low | > 80 |
| Rhodanobacter denitrificans FW104-10B01 | 0.24 | LRK54_RS07510 | | DNA photolyase family protein | 0.44 | LRK54_RS06900 | | serine/threonine protein kinase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.24 | LRK55_RS07250 | | deoxyribodipyrimidine photo-lyase | 0.43 | LRK55_RS06645 | | serine/threonine protein kinase | low | > 63 |
Not shown: 20 genomes with orthologs for RR42_RS15885 only; 2 genomes with orthologs for RR42_RS02875 only