Conservation of cofitness between Psyr_4002 and Psyr_4270 in Pseudomonas syringae pv. syringae B728a

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4002 conserved hypothetical protein 1.0 Psyr_4270 serine hydroxymethyltransferase 0.43 18
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4002 conserved hypothetical protein 1.00 Psyr_4270 serine hydroxymethyltransferase low > 86
Pseudomonas orientalis W4I3 0.89 QF045_RS24825 flavin reductase family protein 0.98 QF045_RS26575 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_03820 Asp/Glu/hydantoin racemase 0.97 AO353_14020 serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24295 flavin reductase family protein 0.98 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24295 flavin reductase family protein 0.98 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas sp. DMC3 0.87 GFF5043 hypothetical protein 0.97 GFF3963 Serine hydroxymethyltransferase — —
Pseudomonas simiae WCS417 0.87 PS417_22655 Asp/Glu/hydantoin racemase 0.98 PS417_24280 serine hydroxymethyltransferase — —
Pseudomonas lactucae CFBP13502 0.87 GEMAOFIL_04685 hypothetical protein 0.98 GEMAOFIL_05008 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_687 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) 0.97 Pf1N1B4_2778 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas sp. RS175 0.86 PFR28_03470 hypothetical protein 0.96 PFR28_03786 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_5484 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) 0.97 Pf6N2E2_5082 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1803 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) 0.97 PfGW456L13_1451 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_17775 Asp/Glu/hydantoin racemase 0.97 AO356_15725 serine hydroxymethyltransferase — —
Pseudomonas sp. BP01 0.80 JOY50_RS14510 flavin reductase family protein 0.96 JOY50_RS24625 glyA serine hydroxymethyltransferase — —
Pseudomonas sp. SVBP6 0.80 COO64_RS26200 flavin reductase family protein 0.97 COO64_RS02995 glyA serine hydroxymethyltransferase — —
Pseudomonas putida KT2440 0.79 PP_1398 conserved protein of unknown function 0.96 PP_0671 serine hydroxymethyltransferase — —
Cupriavidus basilensis FW507-4G11 0.76 RR42_RS31570 Asp/Glu/hydantoin racemase 0.65 RR42_RS15485 serine hydroxymethyltransferase — —
Variovorax sp. OAS795 0.75 ABID97_RS06070 flavin reductase family protein 0.64 ABID97_RS17890 serine hydroxymethyltransferase — —
Variovorax sp. SCN45 0.74 GFF4552 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) 0.64 GFF560 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Acidovorax sp. GW101-3H11 0.73 Ac3H11_4939 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) 0.64 Ac3H11_2921 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.619.1 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) 0.75 Xcc-8004.4398.1 Serine hydroxymethyltransferase (EC 2.1.2.1) low > 74
Enterobacter asburiae PDN3 0.63 EX28DRAFT_2344 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 0.74 EX28DRAFT_0099 Glycine/serine hydroxymethyltransferase — —
Ralstonia solanacearum GMI1000 0.63 RS_RS09180 flavin reductase family protein 0.64 RS_RS03670 serine hydroxymethyltransferase — —
Pantoea sp. MT58 0.63 IAI47_13220 flavin reductase family protein 0.75 IAI47_04960 serine hydroxymethyltransferase — —
Pantoea agglomerans CFBP13505 P0401 0.63 PagCFBP13505_RS04100 flavin reductase family protein 0.76 PagCFBP13505_RS14850 serine hydroxymethyltransferase — —
Dickeya dianthicola ME23 0.63 DZA65_RS08775 flavin reductase family protein 0.77 DZA65_RS16775 serine hydroxymethyltransferase — —
Enterobacter sp. TBS_079 0.62 MPMX20_01278 hypothetical protein 0.74 MPMX20_03420 Serine hydroxymethyltransferase — —
Klebsiella pneumoniae MKP103 0.62 KDGMDA_17210 Asp/Glu/hydantoin racemase 0.74 KDGMDA_28355 Serine hydroxymethyltransferase low > 95
Serratia liquefaciens MT49 0.62 IAI46_07505 flavin reductase family protein 0.76 IAI46_19395 serine hydroxymethyltransferase — —
Erwinia amylovora T8 0.61 OLJFJH_16505 Asp/Glu/hydantoin racemase 0.76 OLJFJH_10340 Serine hydroxymethyltransferase — —
Shewanella loihica PV-4 0.61 Shew_0498 flavoprotein oxygenase (RefSeq) 0.79 Shew_1185 glyA serine hydroxymethyltransferase (RefSeq) low > 60
Klebsiella michiganensis M5al 0.60 BWI76_RS08950 Asp/Glu/hydantoin racemase 0.74 BWI76_RS21225 serine hydroxymethyltransferase — —
Rahnella sp. WP5 0.60 EX31_RS19000 flavin reductase family protein 0.76 EX31_RS20585 serine hydroxymethyltransferase — —
Paraburkholderia graminis OAS925 0.60 ABIE53_004743 flavin reductase (DIM6/NTAB) family NADH-FMN oxidoreductase RutF 0.63 ABIE53_000888 glycine hydroxymethyltransferase — —
Erwinia tracheiphila SCR3 0.60 LU632_RS09430 flavin reductase family protein 0.74 LU632_RS17915 serine hydroxymethyltransferase — —
Erwinia tracheiphila HP pepo 2.2 0.60 IJEDHG_19890 Asp/Glu/hydantoin racemase 0.74 IJEDHG_02915 Serine hydroxymethyltransferase 1 — —
Alteromonas macleodii MIT1002 0.60 MIT1002_01492 Flavin reductase like domain protein 0.71 MIT1002_02702 Serine hydroxymethyltransferase low > 70
Shewanella oneidensis MR-1 0.59 SO0492 hypothetical flavoprotein oxygenases (NCBI ptt file) 0.77 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) low > 76
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS34150 Asp/Glu/hydantoin racemase 0.63 BPHYT_RS03725 serine hydroxymethyltransferase low > 109
Shewanella sp. ANA-3 0.58 Shewana3_0503 flavoprotein oxygenase (RefSeq) 0.77 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_03516 NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family 0.63 H281DRAFT_04726 serine hydroxymethyltransferase — —
Agrobacterium fabrum C58 0.45 Atu1743 hypothetical protein 0.61 Atu1165 serine hydroxymethyltransferase — —
Sinorhizobium meliloti 1021 0.41 SMc01013 hypothetical protein 0.59 SMc01770 serine hydroxymethyltransferase low > 103
Phaeobacter inhibens DSM 17395 0.41 PGA1_c06410 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 0.59 PGA1_c11870 serine hydroxymethyltransferase GlyA low > 62
Rhizobium sp. OAE497 0.38 ABIE40_RS09680 flavin reductase family protein 0.60 ABIE40_RS06715 serine hydroxymethyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF4715 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) 0.63 GFF5152 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas segetis P6 0.25 ACVTMO_RS13250 flavin reductase family protein 0.89 ACVTMO_RS19725 glyA serine hydroxymethyltransferase — —
Pseudomonas sp. S08-1 0.23 OH686_01870 flavin reductase domain protein FMN-binding protein 0.93 OH686_16230 Serine hydroxymethyltransferase — —
Pseudomonas aeruginosa MRSN321 0.22 DY961_RS19875 flavin reductase family protein 0.93 DY961_RS23420 glyA;go_function=glycine serine hydroxymethyltransferase low > 100
Pseudomonas aeruginosa PUPa3 0.22 DQ20_RS53980 flavin reductase family protein 0.93 DQ20_RS55885 glyA;go_function=glycine serine hydroxymethyltransferase — —
Herbaspirillum seropedicae SmR1 0.21 HSERO_RS06660 flavin reductase 0.65 HSERO_RS06140 serine hydroxymethyltransferase — —
Pseudomonas aeruginosa PA14 0.21 IKLFDK_07890 flavin reductase family protein 0.93 IKLFDK_00500 Serine hydroxymethyltransferase 3 — —
Marinobacter adhaerens HP15 0.19 HP15_1550 protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family protein 0.81 HP15_489 glycine hydroxymethyltransferase — —
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS01340 flavin reductase family protein 0.52 HMPREF1078_RS02145 serine hydroxymethyltransferase low > 61
Bacteroides stercoris CC31F 0.14 HMPREF1181_RS15000 flavin reductase family protein 0.54 HMPREF1181_RS15010 serine hydroxymethyltransferase low > 56
Bacteroides ovatus ATCC 8483 0.14 BACOVA_02448 flavin reductase-like protein 0.54 BACOVA_02446 glycine hydroxymethyltransferase low > 96
Bacteroides thetaiotaomicron VPI-5482 0.14 BT0740 flavoredoxin (NCBI ptt file) 0.54 BT0738 serine hydroxymethyltransferase (NCBI ptt file) low > 81
Desulfovibrio vulgaris Hildenborough JW710 0.13 DVU0384 flr flavoredoxin (TIGR) 0.57 DVU1203 glyA serine hydroxymethyltransferase (TIGR) — —

Not shown: 8 genomes with orthologs for Psyr_4002 only; 50 genomes with orthologs for Psyr_4270 only