| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3511 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | 1.0 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.40 | 20 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3511 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | 1.00 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.77 | PFLU_RS25085 | | response regulator | 0.78 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.77 | PFLU_RS25085 | | response regulator | 0.78 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.77 | AO356_27280 | | XRE family transcriptional regulator | 0.77 | AO356_13425 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. S08-1 | 0.73 | OH686_04665 | | Two-component system response regulator QseB | 0.75 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Pseudomonas sp. RS175 | 0.73 | PFR28_02328 | | Transcriptional regulatory protein QseB | 0.76 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.72 | PfGW456L13_3169 | | Two-component system response regulator QseB | 0.82 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.71 | Pf6N2E2_1539 | | Two-component system response regulator QseB | 0.75 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 103 |
| Pseudomonas putida KT2440 | 0.71 | PP_2713 | | DNA-binding response regulator | 0.75 | PP_5094 | | putative enzyme with PLP binding domain | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_4454 | | Two-component system response regulator QseB | 0.78 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Pseudomonas simiae WCS417 | 0.70 | PS417_13595 | | XRE family transcriptional regulator | 0.82 | PS417_26725 | | hypothetical protein | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_3476 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | 0.72 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | low | > 67 |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_003418 | | two-component system response regulator QseB | 0.58 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_04180 | | two component transcriptional regulator, winged helix family | 0.56 | H281DRAFT_04680 | | hypothetical protein | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS16220 | | transcriptional regulator | 0.57 | BPHYT_RS03495 | | hypothetical protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.60 | QEN71_RS02475 | | response regulator | 0.60 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 153 |
| Variovorax sp. OAS795 | 0.56 | ABID97_RS14955 | | response regulator | 0.50 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Variovorax sp. SCN45 | 0.56 | GFF1175 | | Two-component system response regulator QseB | 0.53 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | — | — |
| Acidovorax sp. GW101-3H11 | 0.56 | Ac3H11_3946 | | Two-component system response regulator QseB | 0.47 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.56 | GFF700 | | Two-component system response regulator QseB | 0.50 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS21985 | | transcriptional regulator | 0.60 | HSERO_RS18995 | | hypothetical protein | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS22890 | | response regulator transcription factor | 0.57 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS37390 | | XRE family transcriptional regulator | 0.55 | RR42_RS17355 | | hypothetical protein | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS24590 | | DNA-binding response regulator | 0.53 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Dechlorosoma suillum PS | 0.53 | Dsui_2248 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | 0.55 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | low | > 51 |
| Ralstonia solanacearum UW163 | 0.52 | UW163_RS17155 | | DNA-binding response regulator | 0.52 | UW163_RS08050 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.52 | RALBFv3_RS16415 | | DNA-binding response regulator | 0.52 | RALBFv3_RS05575 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS21175 | pmrA | two-component system response regulator PmrA | 0.50 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Ralstonia solanacearum PSI07 | 0.52 | RPSI07_RS07290 | | DNA-binding response regulator | 0.53 | RPSI07_RS11725 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 81 |
| Rahnella sp. WP5 | 0.51 | EX31_RS08605 | | two-component system response regulator PmrA | 0.50 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_23010 | | XRE family transcriptional regulator | 0.74 | AO353_08160 | | hypothetical protein | low | > 101 |
| Pantoea sp. MT58 | 0.50 | IAI47_17605 | | response regulator | 0.51 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Dickeya dianthicola 67-19 | 0.50 | HGI48_RS21345 | | response regulator | 0.52 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_14050 | ompR | DNA-binding response regulator | 0.32 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS07340 | | response regulator | 0.32 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS07600 | | response regulator | 0.33 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Enterobacter asburiae PDN3 | 0.49 | EX28DRAFT_3057 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | 0.49 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_03863 | | Transcriptional regulatory protein QseB | 0.47 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_02034 | | Transcriptional regulatory protein QseB | 0.50 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.48 | ABZR86_RS01270 | | response regulator | 0.31 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF1469 | | Transcriptional regulatory protein basR/pmrA | 0.50 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS11770 | | response regulator | 0.33 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.36 | 7 |
| Vibrio cholerae E7946 ATCC 55056 | 0.47 | CSW01_19595 | | DNA-binding response regulator | 0.51 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 0.45 | 38 |
| Escherichia fergusonii Becca | 0.47 | EFB2_04469 | | Transcriptional regulatory protein BasR | 0.50 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS00875 | | response regulator transcription factor | 0.44 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 62 |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS23805 | | two-component system response regulator BasR | 0.50 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | low | > 55 |
| Escherichia coli ECRC62 | 0.47 | BNILDI_06655 | basR | two-component system response regulator BasR | 0.50 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_16205 | basR | two-component system response regulator BasR | 0.50 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_03080 | basR | two-component system response regulator BasR | 0.50 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_15595 | basR | two-component system response regulator BasR | 0.50 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC100 | 0.47 | OKFHMN_12570 | basR | two-component system response regulator BasR | 0.50 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | low | > 80 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_10415 | basR | two-component system response regulator BasR | 0.50 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_04835 | basR | two-component system response regulator BasR | 0.50 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_3968 | | two component transcriptional regulator, winged helix family | 0.51 | HP15_288 | | alanine racemase domain protein | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.46 | HER17_RS21560 | | response regulator | 0.53 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_00810 | | Transcriptional regulatory protein BasR | 0.50 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | low | > 70 |
| Serratia liquefaciens MT49 | 0.45 | IAI46_21235 | | response regulator | 0.51 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS19350 | | two-component system response regulator PmrA | 0.53 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_1885 | | two component transcriptional regulator (RefSeq) | 0.50 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Rhizobium sp. OAE497 | 0.43 | ABIE40_RS17030 | | response regulator | 0.28 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.43 | A4249_RS11495 | | response regulator transcription factor | 0.26 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 48 |
| Shewanella oneidensis MR-1 | 0.42 | SO2104 | | DNA-binding response regulator YgiX, putative (NCBI ptt file) | 0.51 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
Not shown: 0 genomes with orthologs for Psyr_3511 only; 39 genomes with orthologs for Psyr_0477 only