Conservation of cofitness between PP_4697 and PP_4902 in Pseudomonas putida KT2440

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4697 poly(A) polymerase 1.0 PP_4902 Oligoribonuclease 0.23 10
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.92 Pf6N2E2_3622 3'-to-5' oligoribonuclease (orn) — —
Pseudomonas simiae WCS417 0.82 PS417_23900 poly(A) polymerase 0.90 PS417_02450 oligoribonuclease — —
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_16070 poly(A) polymerase 0.93 AO356_08695 oligoribonuclease — —
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.90 PFLU_RS02530 oligoribonuclease — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.91 PfGW456L13_162 3'-to-5' oligoribonuclease (orn) — —
Pseudomonas fluorescens SBW25 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.90 PFLU_RS02530 oligoribonuclease — —
Pseudomonas sp. RS175 0.82 PFR28_03719 Poly(A) polymerase I 0.92 PFR28_05113 Oligoribonuclease — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_14395 poly(A) polymerase 0.91 AO353_13105 oligoribonuclease — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_0830 Poly(A) polymerase 0.84 Psyr_0564 Exonuclease — —
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_0830 Poly(A) polymerase 0.84 Psyr_0564 Exonuclease — —
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.90 Pf1N1B4_1420 3'-to-5' oligoribonuclease (orn) — —
Pseudomonas sp. S08-1 0.71 OH686_17255 Poly(A) polymerase 0.82 OH686_09505 3'-to-5' oligoribonuclease (orn) low > 80
Pseudomonas stutzeri RCH2 0.70 Psest_0998 poly(A) polymerase 0.88 Psest_0500 Oligoribonuclease (3'->5' exoribonuclease) — —
Marinobacter adhaerens HP15 0.46 HP15_326 polyA polymerase 0.67 HP15_2506 oligoribonuclease — —
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.69 CSW01_01765 oligoribonuclease — —
Alteromonas macleodii MIT1002 0.44 MIT1002_03692 Poly(A) polymerase I precursor 0.68 MIT1002_00496 Oligoribonuclease — —
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0058 poly(A) polymerase 0.68 B158DRAFT_1946 Oligoribonuclease (3'->5' exoribonuclease) — —
Shewanella sp. ANA-3 0.43 Shewana3_3406 poly(A) polymerase (RefSeq) 0.68 Shewana3_0590 oligoribonuclease (RefSeq) — —
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26465 polynucleotide adenylyltransferase PcnB 0.63 QEN71_RS04255 oligoribonuclease — —
Shewanella amazonensis SB2B 0.43 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.64 Sama_3032 oligoribonuclease (RefSeq) — —
Serratia liquefaciens MT49 0.43 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.69 IAI46_01575 oligoribonuclease — —
Paraburkholderia graminis OAS925 0.43 ABIE53_000870 poly(A) polymerase 0.64 ABIE53_003119 oligoribonuclease — —
Shewanella oneidensis MR-1 0.43 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.68 SO0592 orn oligoribonuclease (NCBI ptt file) — —
Shewanella loihica PV-4 0.42 Shew_3131 poly(A) polymerase (RefSeq) 0.64 Shew_0559 oligoribonuclease (RefSeq) — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04706 poly(A) polymerase 0.62 H281DRAFT_04301 oligoribonuclease — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03620 poly(A) polymerase 0.62 BPHYT_RS14720 oligoribonuclease — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.63 Xcc-8004.2410.1 3'-to-5' oligoribonuclease (orn) — —
Enterobacter sp. TBS_079 0.42 MPMX20_00829 Poly(A) polymerase I 0.69 MPMX20_00443 Oligoribonuclease — —
Lysobacter sp. OAE881 0.42 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.62 ABIE51_RS09510 oligoribonuclease — —
Enterobacter asburiae PDN3 0.42 EX28DRAFT_3732 poly(A) polymerase 0.69 EX28DRAFT_3360 Oligoribonuclease (3'->5' exoribonuclease) — —
Dickeya dadantii 3937 0.42 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.69 DDA3937_RS18940 oligoribonuclease — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS17235 poly(A) polymerase 0.63 RR42_RS14770 oligoribonuclease — —
Dickeya dianthicola ME23 0.42 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.69 DZA65_RS20150 oligoribonuclease — —
Klebsiella michiganensis M5al 0.41 BWI76_RS05005 polynucleotide adenylyltransferase 0.68 BWI76_RS02480 oligoribonuclease — —
Dickeya dianthicola 67-19 0.41 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.69 HGI48_RS19035 oligoribonuclease — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.66 GFF1989 '3'-to-5' oligoribonuclease (orn)' transl_table=11 — —
Pantoea sp. MT58 0.41 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.68 IAI47_02540 oligoribonuclease — —
Escherichia coli ECRC98 0.41 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.69 JDDGAC_15950 orn oligoribonuclease — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.61 LRK55_RS17690 oligoribonuclease — —
Escherichia fergusonii Becca 0.41 EFB2_03901 Poly(A) polymerase I 0.69 EFB2_04373 Oligoribonuclease — —
Escherichia coli ECOR27 0.41 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.69 NOLOHH_04575 orn oligoribonuclease — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_03519 Poly(A) polymerase I 0.69 OHPLBJKB_03880 Oligoribonuclease — —
Escherichia coli ECRC101 0.41 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.69 MCAODC_02825 orn oligoribonuclease — —
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.61 OKGIIK_07465 orn oligoribonuclease — —
Escherichia coli Nissle 1917 0.41 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.69 ECOLIN_RS24180 oligoribonuclease — —
Escherichia coli ECRC102 0.41 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.69 NIAGMN_10160 orn oligoribonuclease — —
Escherichia coli ECRC101 0.41 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.69 OKFHMN_12315 orn oligoribonuclease — —
Escherichia coli BW25113 0.41 b0143 pcnB poly(A) polymerase I (VIMSS) 0.69 b4162 yjeR orf, hypothetical protein (VIMSS) — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.60 LRK54_RS17470 oligoribonuclease — —
Escherichia coli ECRC62 0.41 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.69 BNILDI_06915 orn oligoribonuclease — —
Escherichia coli ECRC99 0.41 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.69 KEDOAH_15850 orn oligoribonuclease — —
Escherichia coli ECOR38 0.41 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.69 HEPCGN_10540 orn oligoribonuclease — —
Escherichia coli BL21 0.41 ECD_00142 poly(A) polymerase 0.69 ECD_04032 oligoribonuclease — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.58 ABZR86_RS01910 oligoribonuclease — —
Pectobacterium carotovorum WPP14 0.40 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.68 HER17_RS02415 oligoribonuclease — —
Castellaniella sp019104865 MT123 0.40 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.58 ABCV34_RS06995 oligoribonuclease — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS03145 poly(A) polymerase 0.67 HSERO_RS07210 oligoribonuclease — —
Dechlorosoma suillum PS 0.40 Dsui_1515 poly(A) polymerase 0.62 Dsui_3222 oligoribonuclease (3'->5' exoribonuclease) — —
Erwinia tracheiphila SCR3 0.39 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.65 LU632_RS01950 orn oligoribonuclease — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF3438 Poly(A) polymerase (EC 2.7.7.19) 0.56 GFF5731 3'-to-5' oligoribonuclease (orn) low > 90
Acidovorax sp. GW101-3H11 0.36 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.60 Ac3H11_1677 3'-to-5' oligoribonuclease (orn) — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00543 Poly(A) polymerase I 0.65 MPMX26_02630 Oligoribonuclease — —

Not shown: 4 genomes with orthologs for PP_4697 only; 4 genomes with orthologs for PP_4902 only