Conservation of cofitness between PP_4697 and PP_4892 in Pseudomonas putida KT2440

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4697 poly(A) polymerase 1.0 PP_4892 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex 0.24 7
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.73 Pf6N2E2_3612 HflK protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_16070 poly(A) polymerase 0.74 AO356_08645 hypothetical protein low > 104
Pseudomonas simiae WCS417 0.82 PS417_23900 poly(A) polymerase 0.74 PS417_02500 membrane protein — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.74 PfGW456L13_152 HflK protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.75 PFLU_RS02580 FtsH protease activity modulator HflK low > 109
Pseudomonas fluorescens SBW25 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.75 PFLU_RS02580 FtsH protease activity modulator HflK low > 109
Pseudomonas sp. RS175 0.82 PFR28_03719 Poly(A) polymerase I 0.76 PFR28_05123 Modulator of FtsH protease HflK low > 88
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_14395 poly(A) polymerase 0.77 AO353_13155 hypothetical protein low > 101
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_0830 Poly(A) polymerase 0.72 Psyr_0574 protease FtsH subunit HflK low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_0830 Poly(A) polymerase 0.72 Psyr_0574 protease FtsH subunit HflK low > 86
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.75 Pf1N1B4_1410 HflK protein — —
Pseudomonas sp. S08-1 0.71 OH686_17255 Poly(A) polymerase 0.64 OH686_09460 HflK protein low > 80
Pseudomonas stutzeri RCH2 0.70 Psest_0998 poly(A) polymerase 0.66 Psest_0685 HflK protein — —
Marinobacter adhaerens HP15 0.46 HP15_326 polyA polymerase 0.43 HP15_2497 HflK low > 73
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.33 CSW01_01845 protease modulator HflK low > 62
Alteromonas macleodii MIT1002 0.44 MIT1002_03692 Poly(A) polymerase I precursor 0.34 MIT1002_03786 Modulator of FtsH protease HflK low > 70
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0058 poly(A) polymerase 0.30 B158DRAFT_1954 protease FtsH subunit HflK low > 40
Shewanella sp. ANA-3 0.43 Shewana3_3406 poly(A) polymerase (RefSeq) 0.34 Shewana3_0599 HflK protein (RefSeq) low > 73
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26465 polynucleotide adenylyltransferase PcnB 0.32 QEN71_RS06010 FtsH protease activity modulator HflK low > 153
Shewanella amazonensis SB2B 0.43 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.35 Sama_3023 hflK protein (RefSeq) low > 62
Serratia liquefaciens MT49 0.43 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.31 IAI46_01635 FtsH protease activity modulator HflK low > 86
Paraburkholderia graminis OAS925 0.43 ABIE53_000870 poly(A) polymerase 0.30 ABIE53_002735 membrane protease subunit HflK low > 113
Shewanella oneidensis MR-1 0.43 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.33 SO0605 hflK hflK protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.42 Shew_3131 poly(A) polymerase (RefSeq) 0.33 Shew_0568 HflK protein (RefSeq) low > 60
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04706 poly(A) polymerase 0.29 H281DRAFT_00523 protease FtsH subunit HflK low > 103
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03620 poly(A) polymerase 0.29 BPHYT_RS12545 membrane protein — —
Lysobacter sp. OAE881 0.42 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.25 ABIE51_RS06550 FtsH protease activity modulator HflK low > 62
Enterobacter sp. TBS_079 0.42 MPMX20_00829 Poly(A) polymerase I 0.31 MPMX20_00455 Modulator of FtsH protease HflK low > 85
Enterobacter asburiae PDN3 0.42 EX28DRAFT_3732 poly(A) polymerase 0.33 EX28DRAFT_3371 HflK protein low > 76
Dickeya dadantii 3937 0.42 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.33 DDA3937_RS18600 FtsH protease activity modulator HflK low > 74
Dickeya dianthicola ME23 0.42 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.34 DZA65_RS19670 FtsH protease activity modulator HflK low > 75
Klebsiella michiganensis M5al 0.41 BWI76_RS05005 polynucleotide adenylyltransferase 0.32 BWI76_RS02545 protease modulator HflK low > 92
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB 0.32 RALBFv3_RS15310 FtsH protease activity modulator HflK low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.32 GFF827 HflK protein low > 78
Dickeya dianthicola 67-19 0.41 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.33 HGI48_RS18535 FtsH protease activity modulator HflK low > 71
Pantoea sp. MT58 0.41 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.30 IAI47_02600 FtsH protease activity modulator HflK low > 76
Escherichia coli BL21 0.41 ECD_00142 poly(A) polymerase 0.33 ECD_04041 modulator for HflB protease specific for phage lambda cII repressor low > 60
Escherichia coli ECOR27 0.41 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.33 NOLOHH_04510 hflK FtsH protease activity modulator HflK low > 57
Rhodanobacter denitrificans MT42 0.41 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.29 LRK55_RS00390 FtsH protease activity modulator HflK low > 63
Escherichia coli Nissle 1917 0.41 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.33 ECOLIN_RS24240 FtsH protease activity modulator HflK — —
Escherichia coli ECRC98 0.41 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.33 JDDGAC_15885 hflK FtsH protease activity modulator HflK — —
Escherichia coli ECRC101 0.41 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.33 MCAODC_02760 hflK FtsH protease activity modulator HflK — —
Escherichia coli BW25113 0.41 b0143 pcnB poly(A) polymerase I (VIMSS) 0.33 b4174 hflK modulator for HflB protease specific for phage lambda cII repressor (NCBI) 0.29 30
Escherichia coli ECRC101 0.41 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.33 OKFHMN_12245 hflK FtsH protease activity modulator HflK — —
Escherichia coli ECOR38 0.41 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.33 HEPCGN_10475 hflK FtsH protease activity modulator HflK low > 85
Escherichia coli ECRC102 0.41 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.33 NIAGMN_10095 hflK FtsH protease activity modulator HflK — —
Escherichia coli ECRC62 0.41 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.33 BNILDI_06980 hflK FtsH protease activity modulator HflK — —
Escherichia fergusonii Becca 0.41 EFB2_03901 Poly(A) polymerase I 0.33 EFB2_04361 Modulator of FtsH protease HflK low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_03519 Poly(A) polymerase I 0.33 OHPLBJKB_03868 Modulator of FtsH protease HflK 0.44 44
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.29 OKGIIK_06640 hflK FtsH protease activity modulator HflK low > 52
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.28 LRK54_RS00620 FtsH protease activity modulator HflK low > 59
Escherichia coli ECRC99 0.41 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.33 KEDOAH_15910 hflK FtsH protease activity modulator HflK — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.31 ABZR87_RS10950 FtsH protease activity modulator HflK low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS13165 polynucleotide adenylyltransferase PcnB 0.30 RS_RS06120 FtsH protease activity modulator HflK low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB 0.32 RPSI07_RS18065 FtsH protease activity modulator HflK low > 81
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.28 ABZR86_RS08355 FtsH protease activity modulator HflK low > 74
Pectobacterium carotovorum WPP14 0.40 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.31 HER17_RS02595 FtsH protease activity modulator HflK low > 75
Castellaniella sp019104865 MT123 0.40 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.30 ABCV34_RS02660 FtsH protease activity modulator HflK — —
Dechlorosoma suillum PS 0.40 Dsui_1515 poly(A) polymerase 0.35 Dsui_3135 HflK protein — —
Erwinia tracheiphila SCR3 0.39 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.31 LU632_RS02065 hflK FtsH protease activity modulator HflK low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF3438 Poly(A) polymerase (EC 2.7.7.19) 0.33 GFF4856 HflK protein low > 90
Acidovorax sp. GW101-3H11 0.36 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.31 Ac3H11_1801 HflK protein — —

Not shown: 4 genomes with orthologs for PP_4697 only; 11 genomes with orthologs for PP_4892 only