Conservation of cofitness between PP_1326 and PP_1871 in Pseudomonas putida KT2440

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 1.0 PP_1871 Protease HtpX 0.58 12
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_15290 methyltransferase 0.92 AO353_19145 protease HtpX low > 101
Pseudomonas sp. RS175 0.84 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.93 PFR28_00983 Protease HtpX low > 88
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.93 Pf6N2E2_2447 Probable protease htpX homolog (EC 3.4.24.-) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4112 Protein of unknown function UPF0011 0.91 Psyr_3616 Heat shock protein, Metallo peptidase, MEROPS family M48B low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4112 Protein of unknown function UPF0011 0.91 Psyr_3616 Heat shock protein, Metallo peptidase, MEROPS family M48B low > 86
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_17110 methyltransferase 0.93 AO356_03095 protease HtpX low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.92 Pf1N1B4_262 Probable protease htpX homolog (EC 3.4.24.-) — —
Pseudomonas fluorescens SBW25-INTG 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 PFLU_RS08505 protease HtpX low > 109
Pseudomonas fluorescens SBW25 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 PFLU_RS08505 protease HtpX low > 109
Pseudomonas simiae WCS417 0.83 PS417_04590 methyltransferase 0.89 PS417_08555 protease HtpX — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.92 PfGW456L13_2250 Probable protease htpX homolog (EC 3.4.24.-) low > 87
Pseudomonas stutzeri RCH2 0.77 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.86 Psest_1770 Zn-dependent protease with chaperone function — —
Pseudomonas sp. S08-1 0.76 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.82 OH686_22565 Protease HtpX low > 80
Shewanella amazonensis SB2B 0.56 Sama_3353 hypothetical protein (RefSeq) 0.51 Sama_1443 heat shock protein HtpX (RefSeq) — —
Shewanella loihica PV-4 0.55 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.51 Shew_1723 heat shock protein HtpX (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.44 CSW01_05670 protease HtpX low > 62
Escherichia coli Nissle 1917 0.54 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 ECOLIN_RS10185 protease HtpX — —
Escherichia fergusonii Becca 0.54 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.45 EFB2_02172 Protease HtpX low > 86
Escherichia coli ECRC101 0.54 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 MCAODC_18935 htpX protease HtpX — —
Escherichia coli BW25113 0.54 b3146 yraL predicted methyltransferase (NCBI) 0.45 b1829 htpX heat shock protein HtpX (NCBI) low > 76
Marinobacter adhaerens HP15 0.54 HP15_554 tetrapyrrole methylase family protein 0.67 HP15_2097 protease HtpX-like protein low > 73
Escherichia coli ECRC102 0.54 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 NIAGMN_01590 htpX protease HtpX — —
Escherichia coli ECRC98 0.54 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 JDDGAC_01045 htpX protease HtpX — —
Escherichia coli ECRC99 0.54 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 KEDOAH_01635 htpX protease HtpX — —
Escherichia coli ECRC101 0.54 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 OKFHMN_26470 htpX protease HtpX — —
Escherichia coli BL21 0.54 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.45 ECD_01800 putative endopeptidase 0.73 16
Escherichia coli ECOR38 0.54 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 HEPCGN_04870 htpX protease HtpX low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.45 OHPLBJKB_01902 Protease HtpX low > 73
Escherichia coli ECOR27 0.54 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 NOLOHH_16980 htpX protease HtpX — —
Escherichia coli ECRC62 0.54 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 BNILDI_15775 htpX protease HtpX — —
Erwinia tracheiphila SCR3 0.54 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 LU632_RS13240 htpX protease HtpX — —
Shewanella oneidensis MR-1 0.53 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.50 SO2728 htpX peptidase HtpX (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.53 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 HER17_RS11545 protease HtpX low > 75
Acinetobacter radioresistens SK82 0.52 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I 0.64 MPMX26_00808 Protease HtpX — —
Dickeya dadantii 3937 0.52 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 DDA3937_RS11460 protease HtpX low > 74
Shewanella sp. ANA-3 0.52 Shewana3_3879 hypothetical protein (RefSeq) 0.51 Shewana3_2512 heat shock protein HtpX (RefSeq) low > 73
Dickeya dianthicola 67-19 0.52 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 HGI48_RS11505 protease HtpX low > 71
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 ABZR86_RS00580 protease HtpX 0.52 6
Dickeya dianthicola ME23 0.52 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 DZA65_RS11840 protease HtpX low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF1521 rRNA small subunit methyltransferase I 0.46 GFF2844 Probable protease HtpX (EC 3.4.24.-) — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 EX28DRAFT_0727 Zn-dependent protease with chaperone function low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.45 MPMX20_02736 Protease HtpX low > 85
Rahnella sp. WP5 0.51 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 EX31_RS24885 protease HtpX — —
Klebsiella michiganensis M5al 0.51 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.45 BWI76_RS17970 zinc metalloprotease HtpX low > 92
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 LRK55_RS14540 protease HtpX low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 LRK54_RS14825 protease HtpX low > 59
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 OKGIIK_03645 htpX protease HtpX low > 52
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.4371.1 rRNA small subunit methyltransferase I 0.52 Xcc-8004.2262.1 Probable protease htpX homolog (EC 3.4.24.-) low > 74
Pantoea sp. MT58 0.49 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 IAI47_08710 protease HtpX low > 76
Lysobacter sp. OAE881 0.49 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 ABIE51_RS13515 protease HtpX low > 62
Serratia liquefaciens MT49 0.49 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 IAI46_10810 protease HtpX — —
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS23345 16S rRNA methyltransferase 0.50 HSERO_RS09810 heat shock protein HtpX low > 78
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.67 B158DRAFT_2016 Zn-dependent protease with chaperone function low > 40
Dechlorosoma suillum PS 0.46 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family 0.51 Dsui_1149 Zn-dependent protease with chaperone function low > 51
Bosea sp. OAE506 0.37 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.15 ABIE41_RS05110 zinc metalloprotease HtpX low > 77
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS19740 16S rRNA methyltransferase 0.49 RR42_RS19940 heat-shock protein HtpX low > 128
Castellaniella sp019104865 MT123 0.37 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 ABCV34_RS02205 protease HtpX — —
Ralstonia solanacearum GMI1000 0.35 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.16 RS_RS00370 protease HtpX low > 80
Variovorax sp. OAS795 0.34 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.44 ABID97_RS06055 protease HtpX 0.57 28
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4466 rRNA small subunit methyltransferase I 0.44 Ac3H11_1965 Heat shock protease — —
Variovorax sp. SCN45 0.31 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) 0.44 GFF4554 Protease HtpX low > 127
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.17 A4249_RS14650 zinc metalloprotease HtpX — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF2715 rRNA small subunit methyltransferase I 0.45 GFF526 Heat shock protease low > 90
Mycobacterium tuberculosis H37Rv 0.27 Rv1003 Conserved protein 0.14 Rv0563 Probable protease transmembrane protein heat shock protein HtpX low > 58

Not shown: 23 genomes with orthologs for PP_1326 only; 5 genomes with orthologs for PP_1871 only