Conservation of cofitness between PP_2000 and PP_1654 in Pseudomonas putida KT2440

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2000 amidophosphoribosyl transferase 1.0 PP_1654 cysteine synthase B 0.41 10
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_3935 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.89 PfGW456L13_2032 Cysteine synthase B (EC 2.5.1.47) — —
Pseudomonas sp. RS175 0.94 PFR28_02811 Amidophosphoribosyltransferase 0.90 PFR28_03225 Cysteine synthase B — —
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_20690 amidophosphoribosyltransferase 0.91 AO353_02720 cysteine synthase — —
Pseudomonas simiae WCS417 0.94 PS417_18535 amidophosphoribosyltransferase 0.92 PS417_20160 cysteine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_76 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.90 Pf6N2E2_5721 Cysteine synthase B (EC 2.5.1.47) — —
Pseudomonas fluorescens SBW25 0.94 PFLU_RS20515 amidophosphoribosyltransferase 0.92 PFLU_RS22105 cysteine synthase CysM low > 109
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS20515 amidophosphoribosyltransferase 0.92 PFLU_RS22105 cysteine synthase CysM low > 109
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_21465 amidophosphoribosyltransferase 0.90 AO356_19050 cysteine synthase 0.47 81
Pseudomonas stutzeri RCH2 0.93 Psest_2579 amidophosphoribosyltransferase 0.88 Psest_1638 cysteine synthase B — —
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_1668 amidophosphoribosyltransferase 0.87 Psyr_3697 cysteine synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_1668 amidophosphoribosyltransferase 0.87 Psyr_3697 cysteine synthase — —
Pseudomonas sp. S08-1 0.91 OH686_04420 amidophosphoribosyltransferase 0.83 OH686_18950 cysteine synthase B — —
Marinobacter adhaerens HP15 0.76 HP15_1821 amidophosphoribosyltransferase 0.77 HP15_789 cysteine synthase B — —
Acinetobacter radioresistens SK82 0.72 MPMX26_01122 Amidophosphoribosyltransferase 0.69 MPMX26_00536 Cysteine synthase B — —
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1488 amidophosphoribosyltransferase (EC 2.4.2.14) 0.32 B158DRAFT_1208 cystathionine beta-synthase (acetylserine-dependent) (EC 4.2.1.-) — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS01105 amidophosphoribosyltransferase 0.34 LRK55_RS00680 cysteine synthase A low > 63
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS01340 amidophosphoribosyltransferase 0.34 LRK54_RS00905 cysteine synthase A 0.60 37
Dickeya dadantii 3937 0.64 DDA3937_RS14435 amidophosphoribosyltransferase 0.66 DDA3937_RS04425 cysteine synthase CysM low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS15335 amidophosphoribosyltransferase 0.66 DZA65_RS04315 cysteine synthase CysM low > 75
Shewanella sp. ANA-3 0.64 Shewana3_1483 amidophosphoribosyltransferase (RefSeq) 0.69 Shewana3_3188 cysM cysteine synthase B (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.64 HER17_RS07020 amidophosphoribosyltransferase 0.66 HER17_RS17210 cysteine synthase CysM low > 75
Dickeya dianthicola 67-19 0.64 HGI48_RS14405 amidophosphoribosyltransferase 0.65 HGI48_RS04400 cysteine synthase CysM low > 71
Shewanella oneidensis MR-1 0.64 SO3064 purF amidophosphoribosyltransferase (NCBI ptt file) 0.68 SO3598 cysM cysteine synthase B (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_05115 amidophosphoribosyltransferase 0.73 CSW01_02845 cysteine synthase CysM low > 62
Escherichia coli BW25113 0.63 b2312 purF amidophosphoribosyltransferase (NCBI) 0.68 b2421 cysM cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) low > 76
Escherichia coli ECOR27 0.63 NOLOHH_14335 purF amidophosphoribosyltransferase 0.68 NOLOHH_13850 cysM cysteine synthase B low > 57
Escherichia coli ECRC62 0.63 BNILDI_13255 purF amidophosphoribosyltransferase 0.68 BNILDI_12715 cysM cysteine synthase B — —
Serratia liquefaciens MT49 0.63 IAI46_17810 amidophosphoribosyltransferase 0.64 IAI46_18490 cysteine synthase CysM low > 86
Escherichia coli BL21 0.63 ECD_02237 amidophosphoribosyltransferase 0.68 ECD_02321 cysteine synthase B (O-acetylserine sulfhydrolase B) low > 60
Erwinia tracheiphila SCR3 0.63 LU632_RS07865 purF amidophosphoribosyltransferase 0.63 LU632_RS06675 cysM cysteine synthase CysM low > 74
Escherichia coli ECRC101 0.63 OKFHMN_22715 purF amidophosphoribosyltransferase 0.67 OKFHMN_22170 cysM cysteine synthase B — —
Escherichia coli ECRC102 0.63 NIAGMN_20485 purF amidophosphoribosyltransferase 0.67 NIAGMN_19940 cysM cysteine synthase B — —
Escherichia coli ECOR38 0.63 HEPCGN_21910 purF amidophosphoribosyltransferase 0.68 HEPCGN_21345 cysM cysteine synthase B low > 85
Escherichia coli Nissle 1917 0.63 ECOLIN_RS13405 amidophosphoribosyltransferase 0.68 ECOLIN_RS13900 cysteine synthase B — —
Escherichia fergusonii Becca 0.63 EFB2_01546 Amidophosphoribosyltransferase 0.68 EFB2_01456 Cysteine synthase B low > 86
Escherichia coli ECRC99 0.63 KEDOAH_05480 purF amidophosphoribosyltransferase 0.67 KEDOAH_06050 cysM cysteine synthase B — —
Escherichia coli ECRC101 0.63 MCAODC_13755 purF amidophosphoribosyltransferase 0.67 MCAODC_12700 cysM cysteine synthase B — —
Escherichia coli ECRC98 0.63 JDDGAC_26675 purF amidophosphoribosyltransferase 0.67 JDDGAC_26120 cysM cysteine synthase B — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.68 GFF2055 Cysteine synthase (EC 2.5.1.47) low > 78
Klebsiella michiganensis M5al 0.63 BWI76_RS20350 amidophosphoribosyltransferase 0.68 BWI76_RS20685 cysteine synthase B — —
Lysobacter sp. OAE881 0.63 ABIE51_RS06180 amidophosphoribosyltransferase 0.35 ABIE51_RS15860 cysteine synthase A low > 62
Enterobacter sp. TBS_079 0.63 MPMX20_03247 Amidophosphoribosyltransferase 0.68 MPMX20_03313 Cysteine synthase B — —
Enterobacter asburiae PDN3 0.63 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14) 0.68 EX28DRAFT_0209 cysteine synthase B — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_01393 Amidophosphoribosyltransferase 0.68 OHPLBJKB_01302 Cysteine synthase B low > 73
Pantoea sp. MT58 0.63 IAI47_06275 amidophosphoribosyltransferase 0.62 IAI47_05405 cysteine synthase CysM low > 76
Rahnella sp. WP5 0.63 EX31_RS19570 amidophosphoribosyltransferase 0.68 EX31_RS20205 cysteine synthase CysM low > 89
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS16445 amidophosphoribosyltransferase 0.69 HSERO_RS04915 cysteine synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_06060 amidophosphoribosyltransferase 0.68 H281DRAFT_03911 cysteine synthase — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS02550 amidophosphoribosyltransferase 0.69 RALBFv3_RS13825 cysteine synthase CysM — —
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS14465 amidophosphoribosyltransferase 0.68 ABZR87_RS09515 cysteine synthase CysM — —
Ralstonia solanacearum UW163 0.60 UW163_RS11175 amidophosphoribosyltransferase 0.69 UW163_RS15985 cysteine synthase CysM — —
Paraburkholderia graminis OAS925 0.60 ABIE53_004816 amidophosphoribosyltransferase 0.64 ABIE53_003144 cysteine synthase B — —
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS33840 amidophosphoribosyltransferase 0.66 BPHYT_RS14845 cysteine synthase 0.75 58
Ralstonia solanacearum GMI1000 0.60 RS_RS09930 amidophosphoribosyltransferase 0.69 RS_RS04560 cysteine synthase CysM — —
Ralstonia solanacearum PSI07 0.60 RPSI07_RS14765 amidophosphoribosyltransferase 0.68 RPSI07_RS19645 cysteine synthase CysM — —
Dechlorosoma suillum PS 0.59 Dsui_3186 amidophosphoribosyltransferase 0.71 Dsui_1954 cysteine synthase B — —
Castellaniella sp019104865 MT123 0.59 ABCV34_RS04130 amidophosphoribosyltransferase 0.62 ABCV34_RS07055 cysteine synthase CysM — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS14325 amidophosphoribosyltransferase 0.68 RR42_RS04535 cysteine synthase — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS17680 amidophosphoribosyltransferase 0.69 QEN71_RS04135 cysteine synthase CysM — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.57 GFF300 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.67 GFF709 Cysteine synthase B (EC 2.5.1.47) — —
Acidovorax sp. GW101-3H11 0.57 Ac3H11_2608 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.66 Ac3H11_644 Cysteine synthase B (EC 2.5.1.47) — —
Variovorax sp. OAS795 0.56 ABID97_RS21635 amidophosphoribosyltransferase 0.68 ABID97_RS07880 cysteine synthase CysM — —
Variovorax sp. SCN45 0.56 GFF3089 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.69 GFF6025 Cysteine synthase B (EC 2.5.1.47) — —
Bifidobacterium breve UCC2003 0.30 BBR_RS13380 amidophosphoribosyltransferase 0.31 BBR_RS13140 cysteine synthase low > 34

Not shown: 29 genomes with orthologs for PP_2000 only; 5 genomes with orthologs for PP_1654 only