Conservation of cofitness between PP_4722 and PP_1321 in Pseudomonas putida KT2440

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4722 Transcription elongation factor GreA 1.0 PP_1321 ClpXP protease specificity-enhancing factor 0.42 11
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_3363 Transcription elongation factor GreA 0.64 Pf6N2E2_5341 Stringent starvation protein B — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_07475 transcription elongation factor GreA 0.64 AO356_17085 peptidase — —
Pseudomonas sp. RS175 0.85 PFR28_00078 Transcription elongation factor GreA 0.64 PFR28_03602 Stringent starvation protein B — —
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_4190 transcription elongation factor GreA 0.62 Psyr_4117 Stringent starvation protein B — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_4190 transcription elongation factor GreA 0.62 Psyr_4117 Stringent starvation protein B — —
Pseudomonas sp. S08-1 0.81 OH686_17085 Transcription elongation factor GreA 0.72 OH686_08370 Stringent starvation protein B low > 80
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_1171 Transcription elongation factor GreA 0.61 Pf1N1B4_958 Stringent starvation protein B — —
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS25875 transcription elongation factor GreA 0.64 PFLU_RS04215 ClpXP protease specificity-enhancing factor low > 109
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05625 transcription elongation factor GreA 0.61 AO353_15265 peptidase low > 101
Pseudomonas fluorescens SBW25 0.80 PFLU_RS25875 transcription elongation factor GreA 0.64 PFLU_RS04215 ClpXP protease specificity-enhancing factor low > 109
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_5098 Transcription elongation factor GreA 0.60 PfGW456L13_1638 Stringent starvation protein B — —
Pseudomonas simiae WCS417 0.79 PS417_24035 transcription elongation factor GreA 0.65 PS417_04175 peptidase — —
Pseudomonas stutzeri RCH2 0.77 Psest_0969 transcription elongation factor GreA 0.65 Psest_3275 Stringent starvation protein B low > 67
Shewanella loihica PV-4 0.61 Shew_2837 transcription elongation factor GreA (RefSeq) 0.37 Shew_0574 ClpXP protease specificity-enhancing factor (RefSeq) — —
Shewanella sp. ANA-3 0.61 Shewana3_1017 transcription elongation factor GreA (RefSeq) 0.38 Shewana3_0605 ClpXP protease specificity-enhancing factor (RefSeq) low > 73
Escherichia fergusonii Becca 0.60 EFB2_00642 Transcription elongation factor GreA 0.39 EFB2_00602 Stringent starvation protein B low > 86
Escherichia coli Nissle 1917 0.60 ECOLIN_RS18320 transcription elongation factor GreA 0.39 ECOLIN_RS18515 ClpXP protease specificity-enhancing factor — —
Shewanella oneidensis MR-1 0.60 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.38 SO0612 sspB stringent starvation protein b (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.60 MIT1002_01468 Transcript cleavage factor GreA 0.41 MIT1002_00818 Stringent starvation protein B low > 70
Shewanella amazonensis SB2B 0.59 Sama_0951 GreA/GreB family elongation factor (RefSeq) 0.40 Sama_3017 ClpXP protease specificity-enhancing factor (RefSeq) low > 62
Marinobacter adhaerens HP15 0.59 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain 0.48 HP15_549 stringent starvation protein B low > 73
Klebsiella michiganensis M5al 0.59 BWI76_RS25160 transcription elongation factor GreA 0.40 BWI76_RS25330 stringent starvation protein B — —
Pantoea sp. MT58 0.58 IAI47_17080 transcription elongation factor GreA 0.42 IAI47_17230 ClpXP protease specificity-enhancing factor low > 76
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0617 transcription elongation factor GreA 0.38 B158DRAFT_2104 Stringent starvation protein B low > 40
Pectobacterium carotovorum WPP14 0.57 HER17_RS18330 transcription elongation factor GreA 0.44 HER17_RS19930 ClpXP protease specificity-enhancing factor — —
Erwinia tracheiphila SCR3 0.54 LU632_RS21165 greA transcription elongation factor GreA 0.41 LU632_RS21325 sspB ClpXP protease specificity-enhancing factor low > 74
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_03330 transcription elongation factor GreA 0.45 CSW01_03065 ClpXP protease specificity-enhancing factor low > 62
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.2911.1 Transcription elongation factor GreA 0.37 Xcc-8004.2232.1 Stringent starvation protein B low > 74
Lysobacter sp. OAE881 0.51 ABIE51_RS11610 transcription elongation factor GreA 0.41 ABIE51_RS15420 ClpXP protease specificity-enhancing factor low > 62
Dechlorosoma suillum PS 0.49 Dsui_3063 transcription elongation factor GreA 0.34 Dsui_1816 stringent starvation protein B low > 51
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS06930 transcription elongation factor GreA 0.35 HSERO_RS20225 starvation protein B — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS14135 transcription elongation factor GreA 0.35 ABZR87_RS02365 ClpXP protease specificity-enhancing factor low > 80
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS13505 transcription elongation factor GreA 0.33 RR42_RS18805 peptidase — —
Ralstonia solanacearum PSI07 0.47 RPSI07_RS15260 transcription elongation factor GreA 0.33 RPSI07_RS10525 ClpXP protease specificity-enhancing factor low > 81
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14185 transcription elongation factor GreA 0.36 BPHYT_RS17610 peptidase — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS02185 transcription elongation factor GreA 0.34 RALBFv3_RS06710 ClpXP protease specificity-enhancing factor low > 76
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04404 GreA/GreB family elongation factor 0.37 H281DRAFT_05673 stringent starvation protein B low > 103
Ralstonia solanacearum UW163 0.46 UW163_RS15495 transcription elongation factor GreA 0.34 UW163_RS06905 ClpXP protease specificity-enhancing factor — —
Ralstonia solanacearum GMI1000 0.46 RS_RS07635 transcription elongation factor GreA 0.35 RS_RS14655 ClpXP protease specificity-enhancing factor — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS15540 transcription elongation factor GreA 0.35 ABCV34_RS12615 ClpXP protease specificity-enhancing factor low > 48
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS18005 transcription elongation factor GreA 0.37 LRK54_RS13785 ClpXP protease specificity-enhancing factor low > 59
Rhodanobacter denitrificans MT42 0.39 LRK55_RS17860 transcription elongation factor GreA 0.37 LRK55_RS13500 ClpXP protease specificity-enhancing factor low > 63
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS05595 transcription elongation factor GreA 0.39 ABZR86_RS09860 ClpXP protease specificity-enhancing factor low > 74

Not shown: 53 genomes with orthologs for PP_4722 only; 0 genomes with orthologs for PP_1321 only