Conservation of cofitness between PP_0832 and PP_1321 in Pseudomonas putida KT2440

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1.0 PP_1321 ClpXP protease specificity-enhancing factor 0.42 8
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.61 AO353_15265 peptidase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.62 Psyr_4117 Stringent starvation protein B low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.62 Psyr_4117 Stringent starvation protein B low > 86
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.60 PfGW456L13_1638 Stringent starvation protein B low > 87
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.61 Pf1N1B4_958 Stringent starvation protein B low > 87
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.64 PFLU_RS04215 ClpXP protease specificity-enhancing factor low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.64 PFLU_RS04215 ClpXP protease specificity-enhancing factor low > 109
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.64 AO356_17085 peptidase low > 104
Pseudomonas sp. RS175 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.64 PFR28_03602 Stringent starvation protein B low > 88
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.64 Pf6N2E2_5341 Stringent starvation protein B low > 103
Pseudomonas simiae WCS417 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 0.65 PS417_04175 peptidase low > 88
Pseudomonas sp. S08-1 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.72 OH686_08370 Stringent starvation protein B low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.65 Psest_3275 Stringent starvation protein B low > 67
Shewanella oneidensis MR-1 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.38 SO0612 sspB stringent starvation protein b (NCBI ptt file) — —
Shewanella loihica PV-4 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.37 Shew_0574 ClpXP protease specificity-enhancing factor (RefSeq) — —
Shewanella sp. ANA-3 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.38 Shewana3_0605 ClpXP protease specificity-enhancing factor (RefSeq) low > 73
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.40 BWI76_RS25330 stringent starvation protein B — —
Pantoea sp. MT58 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.42 IAI47_17230 ClpXP protease specificity-enhancing factor low > 76
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.39 EFB2_00602 Stringent starvation protein B low > 86
Escherichia coli Nissle 1917 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.39 ECOLIN_RS18515 ClpXP protease specificity-enhancing factor — —
Erwinia tracheiphila SCR3 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.41 LU632_RS21325 sspB ClpXP protease specificity-enhancing factor low > 74
Pectobacterium carotovorum WPP14 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.44 HER17_RS19930 ClpXP protease specificity-enhancing factor low > 75
Shewanella amazonensis SB2B 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.40 Sama_3017 ClpXP protease specificity-enhancing factor (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.45 CSW01_03065 ClpXP protease specificity-enhancing factor low > 62
Marinobacter adhaerens HP15 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.48 HP15_549 stringent starvation protein B low > 73
Alteromonas macleodii MIT1002 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.41 MIT1002_00818 Stringent starvation protein B low > 70
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.38 B158DRAFT_2104 Stringent starvation protein B low > 40
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.33 RR42_RS18805 peptidase low > 128
Ralstonia solanacearum GMI1000 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.35 RS_RS14655 ClpXP protease specificity-enhancing factor low > 80
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.35 HSERO_RS20225 starvation protein B — —
Ralstonia solanacearum PSI07 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.33 RPSI07_RS10525 ClpXP protease specificity-enhancing factor low > 81
Ralstonia solanacearum UW163 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 UW163_RS06905 ClpXP protease specificity-enhancing factor — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 RALBFv3_RS06710 ClpXP protease specificity-enhancing factor 0.48 32
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.35 ABZR87_RS02365 ClpXP protease specificity-enhancing factor low > 80
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.37 Xcc-8004.2232.1 Stringent starvation protein B low > 74
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.37 LRK54_RS13785 ClpXP protease specificity-enhancing factor low > 59
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.37 LRK55_RS13500 ClpXP protease specificity-enhancing factor low > 63
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.35 ABCV34_RS12615 ClpXP protease specificity-enhancing factor low > 48
Lysobacter sp. OAE881 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.41 ABIE51_RS15420 ClpXP protease specificity-enhancing factor low > 62
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.39 ABZR86_RS09860 ClpXP protease specificity-enhancing factor low > 74
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.36 BPHYT_RS17610 peptidase — —
Dechlorosoma suillum PS 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.34 Dsui_1816 stringent starvation protein B low > 51
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.37 H281DRAFT_05673 stringent starvation protein B low > 103

Not shown: 56 genomes with orthologs for PP_0832 only; 0 genomes with orthologs for PP_1321 only