Conservation of cofitness between PFLU_RS29215 and PFLU_RS08445 in Pseudomonas fluorescens SBW25

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS29215 response regulator transcription factor 1.0 PFLU_RS08445 MarR family transcriptional regulator 0.90 15
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS29215 response regulator transcription factor 1.00 PFLU_RS08445 MarR family transcriptional regulator 0.46 5
Pseudomonas simiae WCS417 0.99 PS417_27535 chemotaxis protein CheY 0.94 PS417_08495 MarR family transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_08995 chemotaxis protein CheY 0.83 AO353_19090 MarR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_2184 Autolysis response regulater LytR 0.87 Pf1N1B4_275 Organic hydroperoxide resistance transcriptional regulator low > 87
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_855 Autolysis response regulater LytR 0.83 PfGW456L13_2237 Organic hydroperoxide resistance transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_4430 Autolysis response regulater LytR 0.82 Pf6N2E2_2458 Organic hydroperoxide resistance transcriptional regulator — —
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_12785 chemotaxis protein CheY 0.83 AO356_03145 MarR family transcriptional regulator — —
Pseudomonas sp. RS175 0.86 PFR28_04366 Sensory transduction protein LytR 0.85 PFR28_00973 Organic hydroperoxide resistance transcriptional regulator — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_0063 Two-component response regulator AlgR 0.75 Psyr_3626 transcriptional regulator, MarR family low > 86
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_0063 Two-component response regulator AlgR 0.75 Psyr_3626 transcriptional regulator, MarR family low > 86
Pseudomonas putida KT2440 0.80 PP_0185 Positive alginate biosynthesis regulatory protein 0.69 PP_1860 Organic hydroperoxide resistance transcriptional regulator 0.25 18
Pseudomonas sp. S08-1 0.77 OH686_13895 Alginate biosynthesis two-component system response regulator AlgR 0.71 OH686_17660 Organic hydroperoxide resistance transcriptional regulator — —
Marinobacter adhaerens HP15 0.39 HP15_241 alginate biosynthesis regulatory protein AlgR-like protein 0.52 HP15_2792 transcriptional regulator MarR family protein low > 73
Lysobacter sp. OAE881 0.39 ABIE51_RS02955 LytTR family DNA-binding domain-containing protein 0.48 ABIE51_RS14315 MarR family transcriptional regulator low > 62
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.830.1 Autolysis response regulater LytR 0.53 Xcc-8004.339.1 Organic hydroperoxide resistance transcriptional regulator low > 74
Dechlorosoma suillum PS 0.30 Dsui_0109 response regulator of the LytR/AlgR family 0.49 Dsui_2172 transcriptional regulator low > 51
Rhodanobacter denitrificans MT42 0.27 LRK55_RS07675 LytTR family DNA-binding domain-containing protein 0.48 LRK55_RS15485 MarR family transcriptional regulator 0.73 7
Acidovorax sp. GW101-3H11 0.26 Ac3H11_1634 Response regulator receiver:LytTr DNA-binding region 0.53 Ac3H11_4655 Organic hydroperoxide resistance transcriptional regulator low > 79
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS07945 LytTR family DNA-binding domain-containing protein 0.48 LRK54_RS15735 MarR family transcriptional regulator low > 59
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF738 Autolysis response regulater LytR 0.50 GFF354 Organic hydroperoxide resistance transcriptional regulator low > 90
Variovorax sp. OAS795 0.25 ABID97_RS08200 LytTR family DNA-binding domain-containing protein 0.50 ABID97_RS00925 MarR family transcriptional regulator low > 91
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS14825 LytTR family DNA-binding domain-containing protein 0.47 ABZR86_RS08950 MarR family transcriptional regulator low > 74
Vibrio cholerae E7946 ATCC 55056 0.22 CSW01_18385 DNA-binding response regulator 0.40 CSW01_19135 MarR family transcriptional regulator low > 62
Ralstonia solanacearum PSI07 0.22 RPSI07_RS17365 DNA-binding response regulator 0.47 RPSI07_RS05140 MarR family transcriptional regulator low > 81
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS00120 DNA-binding response regulator 0.46 RALBFv3_RS18415 MarR family transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.22 UW163_RS13450 DNA-binding response regulator 0.46 UW163_RS20715 MarR family transcriptional regulator — —
Variovorax sp. SCN45 0.22 GFF3826 Response regulator receiver:LytTr DNA-binding region 0.48 GFF3570 Organic hydroperoxide resistance transcriptional regulator low > 127
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS11570 LytTR family DNA-binding domain-containing protein 0.46 ABZR87_RS03665 MarR family transcriptional regulator low > 80
Ralstonia solanacearum GMI1000 0.21 RS_RS06780 DNA-binding response regulator 0.47 RS_RS22455 MarR family transcriptional regulator low > 80
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_0044 two component transcriptional regulator, LytTR family 0.45 Ga0059261_0852 Transcriptional regulators low > 68
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS18060 LytR family transcriptional regulator 0.51 HSERO_RS15365 MarR family transcriptional regulator low > 78
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS12225 LytR family transcriptional regulator 0.49 RR42_RS22585 MarR family transcriptional regulator low > 128
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_1140 Response regulator of the LytR/AlgR family 0.46 Echvi_3340 Transcriptional regulators low > 79
Alteromonas macleodii MIT1002 0.19 MIT1002_01189 Transcriptional regulatory protein YehT 0.35 MIT1002_00888 Organic hydroperoxide resistance transcriptional regulator low > 70
Dickeya dadantii 3937 0.19 DDA3937_RS16365 two-component system response regulator BtsR 0.53 DDA3937_RS18760 MarR family transcriptional regulator low > 74
Shewanella sp. ANA-3 0.19 Shewana3_2594 putative two-component response-regulatory protein YehT (RefSeq) 0.44 Shewana3_3311 MarR family transcriptional regulator (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.18 LU632_RS20440 btsR two-component system response regulator BtsR 0.48 LU632_RS00235 MarR family transcriptional regulator 0.41 62
Dickeya dianthicola ME23 0.18 DZA65_RS17550 two-component system response regulator BtsR 0.52 DZA65_RS19880 MarR family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.18 HGI48_RS16465 two-component system response regulator BtsR 0.52 HGI48_RS18745 MarR family transcriptional regulator low > 71
Serratia liquefaciens MT49 0.17 IAI46_23615 two-component system response regulator BtsR 0.49 IAI46_00420 MarR family transcriptional regulator low > 86
Enterobacter sp. TBS_079 0.17 MPMX20_03092 Transcriptional regulatory protein BtsR 0.51 MPMX20_00654 Organic hydroperoxide resistance transcriptional regulator low > 85
Rahnella sp. WP5 0.17 EX31_RS00780 two-component system response regulator BtsR 0.50 EX31_RS05595 MarR family transcriptional regulator low > 89
Enterobacter asburiae PDN3 0.16 EX28DRAFT_0437 two component transcriptional regulator, LytTR family 0.48 EX28DRAFT_3564 Transcriptional regulators low > 76
Bacteroides ovatus ATCC 8483 0.16 BACOVA_02521 response regulator receiver domain protein 0.20 BACOVA_03182 transcriptional regulator, MarR family low > 94
Pectobacterium carotovorum WPP14 0.16 HER17_RS05370 two-component system response regulator BtsR 0.50 HER17_RS06400 MarR family transcriptional regulator low > 75
Bacteroides thetaiotaomicron VPI-5482 0.16 BT1457 two-component system response regulator (NCBI ptt file) 0.20 BT2164 MarR family transcriptional regulator (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.15 Sama_1281 putative two-component response-regulatory protein YehT (RefSeq) 0.45 Sama_0628 MarR family transcriptional regulator (RefSeq) low > 62
Azospirillum brasilense Sp245 0.15 AZOBR_RS22560 transcriptional regulator 0.47 AZOBR_RS23440 MarR family transcriptional regulator — —
Pantoea sp. MT58 0.15 IAI47_05560 response regulator transcription factor 0.48 IAI47_18675 MarR family transcriptional regulator low > 76
Shewanella loihica PV-4 0.14 Shew_2329 putative two-component response-regulatory protein YehT (RefSeq) 0.45 Shew_0799 MarR family transcriptional regulator (RefSeq) low > 60
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS18080 response regulator transcription factor 0.21 HMPREF1058_RS07650 MarR family transcriptional regulator low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS14405 response regulator transcription factor 0.21 ABI39_RS00075 MarR family transcriptional regulator low > 72
Bacteroides stercoris CC31F 0.12 HMPREF1181_RS12495 response regulator transcription factor 0.19 HMPREF1181_RS08740 MarR family transcriptional regulator low > 56

Not shown: 28 genomes with orthologs for PFLU_RS29215 only; 13 genomes with orthologs for PFLU_RS08445 only