| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Azospirillum sp. SherDot2 | 1.0 | MPMX19_01110 | | tRNA-dihydrouridine synthase B | 1.0 | MPMX19_05261 | | Multidrug resistance protein MdtE | 0.39 | 19 |
| Dechlorosoma suillum PS | 0.47 | Dsui_1593 | | putative TIM-barrel protein, nifR3 family | 0.28 | Dsui_0409 | | RND family efflux transporter, MFP subunit | low | > 51 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_1016 | | putative TIM-barrel protein, nifR3 family | 0.24 | Psest_1565 | | RND family efflux transporter, MFP subunit | low | > 67 |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS07650 | | tRNA dihydrouridine synthase DusB | 0.30 | ABZR87_RS13185 | | efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS01890 | | tRNA dihydrouridine synthase DusB | 0.30 | UW163_RS14700 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Pseudomonas aeruginosa PA14 | 0.45 | IKLFDK_29300 | | tRNA dihydrouridine synthase DusB | 0.28 | IKLFDK_18775 | | multidrug efflux RND transporter periplasmic adaptor subunit MexJ | low | > 98 |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS11695 | | tRNA dihydrouridine synthase DusB | 0.30 | RALBFv3_RS01390 | | efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS21520 | | tRNA dihydrouridine synthase DusB | 0.31 | RPSI07_RS16095 | | efflux RND transporter periplasmic adaptor subunit | low | > 81 |
| Xanthobacter sp. DMC5 | 0.45 | GFF850 | | tRNA-dihydrouridine synthase B | 0.34 | GFF4152 | | Multidrug resistance protein MdtE | — | — |
| Pseudomonas sp. S08-1 | 0.45 | OH686_07610 | | tRNA-dihydrouridine synthase DusB | 0.31 | OH686_06745 | | Multidrug efflux system, membrane fusion component | low | > 80 |
| Pseudomonas aeruginosa MRSN321 | 0.45 | DY961_RS10040 | dusB;go_function=catalytic | tRNA dihydrouridine synthase DusB | 0.28 | DY961_RS14590 | mexJ;inference=COORDINATES | multidrug efflux RND transporter periplasmic adaptor subunit MexJ | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.45 | DQ20_RS52015 | dusB;go_function=catalytic | tRNA dihydrouridine synthase DusB | 0.28 | DQ20_RS42535 | mexJ;inference=COORDINATES | multidrug efflux RND transporter periplasmic adaptor subunit MexJ | low | > 101 |
| Ralstonia solanacearum GMI1000 | 0.45 | RS_RS02515 | | tRNA dihydrouridine synthase DusB | 0.31 | RS_RS08330 | | efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Pseudomonas segetis P6 | 0.45 | ACVTMO_RS20360 | dusB | tRNA dihydrouridine synthase DusB | 0.28 | ACVTMO_RS08085 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.44 | MIT1002_03957 | | putative tRNA-dihydrouridine synthase | 0.14 | MIT1002_00425 | | Cation efflux system protein CzcB | 0.61 | 12 |
| Pseudomonas sp. BP01 | 0.44 | JOY50_RS17635 | dusB | tRNA dihydrouridine synthase DusB | 0.28 | JOY50_RS26095 | | efflux RND transporter periplasmic adaptor subunit | low | > 84 |
| Pseudomonas sp. SVBP6 | 0.44 | COO64_RS18315 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | COO64_RS19545 | | efflux RND transporter periplasmic adaptor subunit | low | > 93 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04249 | | tRNA-U20-dihydrouridine synthase | 0.24 | H281DRAFT_00699 | | RND family efflux transporter, MFP subunit | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS26770 | | tRNA dihydrouridine synthase DusB | 0.23 | QEN71_RS07195 | | efflux RND transporter periplasmic adaptor subunit | low | > 153 |
| Pseudomonas putida KT2440 | 0.44 | PP_4820 | | tRNA-dihydrouridine synthase B | 0.26 | PP_1516 | | RND membrane fusion protein | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.29 | PFLU_RS06180 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.29 | PFLU_RS06180 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas simiae WCS417 | 0.44 | PS417_02950 | | tRNA-dihydrouridine synthase B | 0.29 | PS417_06110 | | RND transporter | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_1313 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.28 | Pf1N1B4_3062 | | RND efflux membrane fusion protein | low | > 87 |
| Pseudomonas orientalis W4I3 | 0.43 | QF045_RS05985 | | tRNA dihydrouridine synthase DusB | 0.29 | QF045_RS08960 | | efflux RND transporter periplasmic adaptor subunit | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.43 | GEMAOFIL_00822 | | tRNA-dihydrouridine synthase B | 0.30 | GEMAOFIL_01392 | | Multidrug resistance protein MdtA | low | > 96 |
| Marinobacter adhaerens HP15 | 0.43 | HP15_3225 | | tRNA-dihydrouridine synthase B | 0.17 | HP15_1119 | | efflux transporter, RND family, MFP subunit | low | > 73 |
| Methylophilus sp. DMC18 | 0.43 | GFF1646 | | tRNA-dihydrouridine synthase B | 0.24 | GFF2821 | | Macrolide export protein MacA | low | > 43 |
| Cupriavidus basilensis FW507-4G11 | 0.43 | RR42_RS02730 | | tRNA-dihydrouridine synthase B | 0.32 | RR42_RS07910 | | RND transporter MFP subunit | low | > 128 |
| Pseudomonas sp. DMC3 | 0.43 | GFF3310 | | tRNA-dihydrouridine synthase B | 0.28 | GFF2033 | | Multidrug resistance protein MdtA | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.43 | TX73_013410 | | tRNA dihydrouridine synthase DusB | 0.32 | TX73_022885 | | efflux RND transporter periplasmic adaptor subunit | low | > 86 |
| Pseudomonas sp. RS175 | 0.43 | PFR28_05216 | | tRNA-dihydrouridine synthase B | 0.28 | PFR28_00378 | | Multidrug resistance protein MdtA | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.43 | AO353_13660 | | tRNA-dihydrouridine synthase B | 0.30 | AO353_16360 | | RND transporter | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.43 | AO356_08215 | | tRNA-dihydrouridine synthase B | 0.28 | AO356_06135 | | RND transporter | low | > 104 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS16450 | | tRNA dihydrouridine synthase DusB | 0.23 | ABIE51_RS10085 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_3517 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.27 | Pf6N2E2_3092 | | RND efflux membrane fusion protein | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.43 | ABIE53_003489 | | tRNA-dihydrouridine synthase B | 0.23 | ABIE53_002353 | | multidrug efflux system membrane fusion protein | low | > 113 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_55 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.30 | PfGW456L13_4731 | | RND efflux membrane fusion protein | low | > 87 |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS16585 | | tRNA-dihydrouridine synthase B | 0.24 | BPHYT_RS11370 | | RND transporter MFP subunit | low | > 109 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.42 | GFF634 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.27 | GFF4032 | | Probable Co/Zn/Cd efflux system membrane fusion protein | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.42 | HSERO_RS02050 | | tRNA-dihydrouridine synthase B | 0.22 | HSERO_RS01320 | | RND transporter MFP subunit | low | > 78 |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS24735 | | tRNA dihydrouridine synthase DusB | 0.27 | ABID97_RS17620 | | efflux RND transporter periplasmic adaptor subunit | low | > 91 |
| Agrobacterium fabrum C58 | 0.41 | Atu1444 | | nitrogen regulation protein | 0.25 | Atu5382 | | HlyD family secretion protein | — | — |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS20235 | | tRNA dihydrouridine synthase DusB | 0.26 | HER17_RS07495 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Variovorax sp. SCN45 | 0.40 | GFF2144 | | tRNA-dihydrouridine synthase DusB | 0.24 | GFF494 | | RND efflux system, membrane fusion protein | low | > 127 |
| Dinoroseobacter shibae DFL-12 | 0.40 | Dshi_1576 | | putative TIM-barrel protein, nifR3 family (RefSeq) | 0.15 | Dshi_1263 | | efflux transporter, RND family, MFP subunit (RefSeq) | low | > 64 |
| Acinetobacter baumannii LAC-4 | 0.40 | RR41_RS04995 | | tRNA dihydrouridine synthase DusB | 0.27 | RR41_RS00165 | | efflux RND transporter periplasmic adaptor subunit | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_02127 | | tRNA-dihydrouridine synthase B | 0.29 | MPMX26_03011 | | Multidrug resistance protein MdtA | low | > 36 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_3996 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.31 | Ac3H11_932 | | Probable Co/Zn/Cd efflux system membrane fusion protein | low | > 79 |
| Shewanella amazonensis SB2B | 0.39 | Sama_3225 | | tRNA-dihydrouridine synthase B (RefSeq) | 0.12 | Sama_0674 | | periplasmic linker protein (RefSeq) | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.39 | SMc01041 | | NIFR3-like protein | 0.25 | SM_b20346 | | efflux protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.38 | ABIE40_RS09080 | | tRNA dihydrouridine synthase DusB | 0.25 | ABIE40_RS17050 | | efflux RND transporter periplasmic adaptor subunit | low | > 107 |
| Pantoea agglomerans CFBP13505 P0401 | 0.37 | PagCFBP13505_RS10980 | | tRNA dihydrouridine synthase DusB | 0.22 | PagCFBP13505_RS12055 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_0399 | | nifR3 family TIM-barrel protein (RefSeq) | 0.16 | Shewana3_3848 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.37 | Shew_0330 | | nifR3 family TIM-barrel protein (RefSeq) | 0.14 | Shew_0467 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.36 | CSW01_01495 | | tRNA dihydrouridine synthase DusB | 0.16 | CSW01_08810 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Parabacteroides merdae CL09T00C40 | 0.34 | HMPREF1078_RS05375 | | tRNA dihydrouridine synthase DusB | 0.13 | HMPREF1078_RS01915 | | efflux RND transporter periplasmic adaptor subunit | low | > 61 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.32 | BT3073 | | putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) | 0.12 | BT1693 | | periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) | low | > 81 |
| Bacteroides ovatus ATCC 8483 | 0.32 | BACOVA_02724 | | TIM-barrel protein, nifR3 family | 0.13 | BACOVA_04447 | | efflux transporter, RND family, MFP subunit | low | > 96 |
| Phocaeicola vulgatus CL09T03C04 | 0.32 | HMPREF1058_RS10945 | | tRNA dihydrouridine synthase DusB | 0.12 | HMPREF1058_RS07125 | | efflux RND transporter periplasmic adaptor subunit | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.31 | ABI39_RS06125 | | tRNA dihydrouridine synthase DusB | 0.13 | ABI39_RS21225 | | efflux RND transporter periplasmic adaptor subunit | low | > 72 |
| Bacteroides stercoris CC31F | 0.31 | HMPREF1181_RS01530 | | tRNA dihydrouridine synthase DusB | 0.14 | HMPREF1181_RS16100 | | efflux RND transporter periplasmic adaptor subunit | low | > 56 |
| Fusobacterium nucleatum SB010 | 0.26 | HUW76_04330 | | tRNA-dihydrouridine synthase | 0.11 | HUW76_07490 | | efflux RND transporter periplasmic adaptor subunit | 0.88 | 19 |
Not shown: 55 genomes with orthologs for MPMX19_01110 only; 1 genomes with orthologs for MPMX19_05261 only