Conservation of cofitness between JDDGAC_28305 and JDDGAC_24790 in Escherichia coli ECRC98

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_28305 mdtB multidrug efflux RND transporter permease subunit MdtB 1.0 JDDGAC_24790 smpB SsrA-binding protein SmpB 0.69 15
Escherichia coli ECRC101 1.00 MCAODC_20745 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 MCAODC_11650 smpB SsrA-binding protein SmpB — —
Escherichia coli ECRC102 1.00 NIAGMN_22140 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 NIAGMN_18895 smpB SsrA-binding protein SmpB — —
Escherichia coli ECRC99 1.00 KEDOAH_03955 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 KEDOAH_07095 smpB SsrA-binding protein SmpB — —
Escherichia coli ECRC100 1.00 OKFHMN_24195 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 OKFHMN_21125 smpB SsrA-binding protein SmpB — —
Escherichia coli ECOR27 1.00 NOLOHH_15540 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 NOLOHH_12795 smpB SsrA-binding protein SmpB — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12200 multidrug efflux RND transporter permease subunit MdtB 1.00 ECOLIN_RS14795 SsrA-binding protein SmpB — —
Escherichia coli BW25113 1.00 b2075 mdtB multidrug efflux system, subunit B (NCBI) 1.00 b2620 smpB SsrA-binding protein (NCBI) low > 76
Escherichia fergusonii Becca 1.00 EFB2_01780 Multidrug resistance protein MdtB 1.00 EFB2_01273 SsrA-binding protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01629 Multidrug resistance protein MdtB 1.00 OHPLBJKB_01087 SsrA-binding protein low > 73
Escherichia coli ECRC62 1.00 BNILDI_14455 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 BNILDI_11600 smpB SsrA-binding protein SmpB low > 75
Escherichia coli ECOR38 1.00 HEPCGN_02885 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 HEPCGN_20245 smpB SsrA-binding protein SmpB — —
Escherichia coli BL21 1.00 ECD_01980 multidrug efflux system, subunit B 1.00 ECD_02508 tmRNA-binding trans-translation protein low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF3854 Multidrug transporter MdtB 0.95 GFF4158 tmRNA-binding protein SmpB low > 78
Klebsiella michiganensis M5al 0.91 BWI76_RS19255 multidrug transporter subunit MdtB 0.92 BWI76_RS21580 SsrA-binding protein low > 92
Enterobacter sp. TBS_079 0.90 MPMX20_03061 Multidrug resistance protein MdtB 0.92 MPMX20_03490 SsrA-binding protein low > 85
Enterobacter asburiae PDN3 0.90 EX28DRAFT_0483 Cation/multidrug efflux pump 0.92 EX28DRAFT_2723 SsrA-binding protein low > 76
Serratia liquefaciens MT49 0.81 IAI46_18975 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.81 IAI46_19655 SsrA-binding protein SmpB low > 86
Pantoea sp. MT58 0.81 IAI47_06870 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.90 IAI47_04790 SsrA-binding protein SmpB — —
Erwinia tracheiphila SCR3 0.80 LU632_RS08690 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.88 LU632_RS17025 smpB SsrA-binding protein SmpB — —
Pectobacterium carotovorum WPP14 0.79 HER17_RS06320 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.87 HER17_RS17440 SsrA-binding protein SmpB low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS15265 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.92 DDA3937_RS04305 SsrA-binding protein SmpB — —
Dickeya dianthicola ME23 0.77 DZA65_RS16165 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.91 DZA65_RS04215 SsrA-binding protein SmpB low > 75
Dickeya dianthicola 67-19 0.76 HGI48_RS15345 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.91 HGI48_RS04300 SsrA-binding protein SmpB low > 71
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS07650 multidrug transporter 0.47 HSERO_RS11000 single-stranded DNA-binding protein — —
Ralstonia solanacearum UW163 0.66 UW163_RS21010 multidrug transporter subunit MdtB 0.50 UW163_RS13820 SsrA-binding protein SmpB — —
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS18120 multidrug transporter subunit MdtB 0.50 RALBFv3_RS00490 SsrA-binding protein SmpB — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS05515 multidrug transporter subunit MdtB 0.51 RPSI07_RS17000 SsrA-binding protein SmpB — —
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS19025 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.49 ABZR87_RS11940 SsrA-binding protein SmpB low > 80
Ralstonia solanacearum GMI1000 0.65 RS_RS22915 multidrug transporter subunit MdtB 0.51 RS_RS07145 SsrA-binding protein — —
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS03310 multidrug transporter 0.49 RR42_RS11775 single-stranded DNA-binding protein — —
Pseudomonas sp. RS175 0.63 PFR28_02194 Multidrug resistance protein MdtB 0.55 PFR28_00065 SsrA-binding protein — —
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_25875 multidrug transporter 0.55 AO356_07540 SsrA-binding protein low > 104
Rahnella sp. WP5 0.62 EX31_RS13380 MMPL family transporter 0.86 EX31_RS21740 SsrA-binding protein SmpB — —
Pseudomonas putida KT2440 0.62 PP_3584 multidrug efflux transport system - membrane subunit 0.58 PP_4733 SsrA-binding protein — —
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_1272 Acriflavin resistance plasma membrane protein 0.55 Pf6N2E2_3378 tmRNA-binding protein SmpB — —
Pseudomonas sp. S08-1 0.62 OH686_00925 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type) 0.58 OH686_17025 SsrA-binding protein low > 80
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_3266 Acriflavin resistance plasma membrane protein 0.53 PfGW456L13_5112 tmRNA-binding protein SmpB low > 87
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_22895 multidrug transporter 0.57 AO353_05690 SsrA-binding protein low > 101
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS13430 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.53 PFLU_RS25935 SsrA-binding protein SmpB — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS13430 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.53 PFLU_RS25935 SsrA-binding protein SmpB low > 109
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_4665 Acriflavin resistance plasma membrane protein 0.53 Pf1N1B4_1184 tmRNA-binding protein SmpB — —
Pseudomonas simiae WCS417 0.61 PS417_12745 multidrug transporter 0.53 PS417_24095 SsrA-binding protein — —
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS23305 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.45 QEN71_RS06520 SsrA-binding protein SmpB — —
Acidovorax sp. GW101-3H11 0.59 Ac3H11_3618 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA 0.46 Ac3H11_2861 tmRNA-binding protein SmpB — —
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06492 multidrug efflux pump 0.49 H281DRAFT_00630 SsrA-binding protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_2483 Acriflavin resistance protein 0.55 Psyr_4203 SsrA-binding protein low > 86
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_2483 Acriflavin resistance protein 0.55 Psyr_4203 SsrA-binding protein low > 86
Pseudomonas stutzeri RCH2 0.59 Psest_2139 Cation/multidrug efflux pump 0.59 Psest_0957 SsrA-binding protein — —
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS07785 multidrug transporter 0.48 BPHYT_RS12040 single-stranded DNA-binding protein — —
Paraburkholderia graminis OAS925 0.58 ABIE53_001783 multidrug efflux pump 0.48 ABIE53_002482 SsrA-binding protein — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS14620 multidrug efflux RND transporter permease subunit 0.47 ABCV34_RS04010 SsrA-binding protein SmpB — —
Variovorax sp. SCN45 0.56 GFF6659 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type) 0.48 GFF213 tmRNA-binding protein SmpB low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.55 GFF487 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA 0.45 GFF4352 tmRNA-binding protein SmpB — —
Variovorax sp. OAS795 0.54 ABID97_RS20855 efflux RND transporter permease subunit 0.48 ABID97_RS16435 SsrA-binding protein SmpB low > 91
Azospirillum sp. SherDot2 0.53 MPMX19_05477 Multidrug resistance protein MdtB 0.40 MPMX19_01218 SsrA-binding protein — —
Magnetospirillum magneticum AMB-1 0.52 AMB_RS17370 acriflavine resistance protein B 0.39 AMB_RS12810 SsrA-binding protein — —
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16320 efflux RND transporter permease subunit 0.54 ABZR86_RS05700 SsrA-binding protein SmpB low > 74
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS09845 efflux RND transporter permease subunit 0.55 LRK54_RS17925 SsrA-binding protein SmpB — —
Rhodanobacter denitrificans MT42 0.50 LRK55_RS09505 efflux RND transporter permease subunit 0.55 LRK55_RS17780 SsrA-binding protein SmpB — —
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_16105 acrB Multidrug efflux pump subunit AcrB 0.55 OKGIIK_07375 smpB SsrA-binding protein SmpB — —
Rhodopseudomonas palustris CGA009 0.49 TX73_013310 efflux RND transporter permease subunit 0.34 TX73_013930 SsrA-binding protein SmpB — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.4792.1 Acriflavin resistance protein 0.55 Xcc-8004.3437.1 tmRNA-binding protein SmpB — —
Bacteroides thetaiotaomicron VPI-5482 0.25 BT2252 multidrug efflux membrane fusion protein (NCBI ptt file) 0.26 BT0179 SsrA-binding protein (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS05470 efflux RND transporter permease subunit 0.25 HMPREF1078_RS14950 SsrA-binding protein low > 61
Phaeobacter inhibens DSM 17395 0.13 PGA1_78p00510 multidrug transporter MdtB 0.36 PGA1_c29450 SsrA-binding protein SmpB — —

Not shown: 0 genomes with orthologs for JDDGAC_28305 only; 36 genomes with orthologs for JDDGAC_24790 only