| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS13935 | | DNAase | 1.0 | HSERO_RS20810 | | amidophosphoribosyltransferase | 0.63 | 2 |
| Paraburkholderia sabiae LMG 24235 | 0.62 | QEN71_RS05855 | | TatD family hydrolase | 0.36 | QEN71_RS01480 | | ComF family protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS12705 | | DNAase | 0.35 | BPHYT_RS02625 | | competence protein ComF | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_00492 | | TatD DNase family protein | 0.36 | H281DRAFT_01997 | | comF family protein | low | > 103 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.55 | GFF744 | | Putative deoxyribonuclease YjjV | 0.20 | GFF685 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 90 |
| Paraburkholderia graminis OAS925 | 0.54 | ABIE53_002767 | | TatD DNase family protein | 0.38 | ABIE53_000670 | | ComF family protein | 0.17 | 113 |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS04985 | | TatD family hydrolase | 0.15 | ABCV34_RS14240 | | phosphoribosyltransferase family protein | low | > 48 |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS06110 | | DNAase | 0.34 | RR42_RS01860 | | amidophosphoribosyltransferase | — | — |
| Variovorax sp. OAS795 | 0.48 | ABID97_RS22725 | | TatD family hydrolase | 0.27 | ABID97_RS23980 | | ComF family protein | low | > 91 |
| Ralstonia sp. UNC404CL21Col | 0.47 | ABZR87_RS10420 | | TatD family hydrolase | 0.31 | ABZR87_RS06780 | | ComF family protein | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.47 | RS_RS05570 | | TatD family deoxyribonuclease | 0.31 | RS_RS01770 | | amidophosphoribosyltransferase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.46 | RPSI07_RS18600 | | TatD family deoxyribonuclease | 0.35 | RPSI07_RS22380 | | amidophosphoribosyltransferase | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_1737 | | Putative deoxyribonuclease YjjV | 0.24 | Ac3H11_3895 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 79 |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS14760 | | TatD family deoxyribonuclease | 0.33 | RALBFv3_RS10930 | | amidophosphoribosyltransferase | — | — |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS12230 | | TatD family deoxyribonuclease | 0.33 | UW163_RS02650 | | amidophosphoribosyltransferase | — | — |
| Variovorax sp. SCN45 | 0.45 | GFF6080 | | Putative deoxyribonuclease YjjV | 0.26 | GFF2294 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 127 |
| Dechlorosoma suillum PS | 0.45 | Dsui_0503 | | Mg-dependent DNase | 0.25 | Dsui_1296 | | putative amidophosphoribosyltransferase | low | > 51 |
| Pseudomonas fluorescens GW456-L13 | 0.36 | PfGW456L13_5078 | | Putative deoxyribonuclease YjjV | 0.27 | PfGW456L13_1146 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_3341 | | Putative deoxyribonuclease YjjV | 0.23 | Pf6N2E2_4758 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 103 |
| Pseudomonas sp. S08-1 | 0.36 | OH686_16550 | | Putative deoxyribonuclease YjjV | 0.27 | OH686_10360 | | Competence protein F-related, phosphoribosyltransferase domain / protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_07345 | | hydrolase TatD | 0.23 | AO356_14130 | | amidophosphoribosyltransferase | low | > 104 |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS02460 | | TatD family hydrolase | 0.22 | DDA3937_RS19650 | | DNA utilization protein GntX | low | > 74 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_03955 | | hydrolase TatD | 0.26 | PS417_26010 | | amidophosphoribosyltransferase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS04000 | | TatD family hydrolase | 0.26 | PFLU_RS27655 | | ComF family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS04000 | | TatD family hydrolase | 0.26 | PFLU_RS27655 | | ComF family protein | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_1148 | | Putative deoxyribonuclease YjjV | 0.26 | Pf1N1B4_2485 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_05495 | | hydrolase TatD | 0.26 | AO353_07530 | | amidophosphoribosyltransferase | low | > 101 |
| Enterobacter asburiae PDN3 | 0.35 | EX28DRAFT_3587 | | Mg-dependent DNase | 0.22 | EX28DRAFT_4129 | | Predicted amidophosphoribosyltransferases | — | — |
| Kangiella aquimarina DSM 16071 | 0.34 | B158DRAFT_2240 | | Mg-dependent DNase | 0.23 | B158DRAFT_0863 | | Predicted amidophosphoribosyltransferases | low | > 40 |
| Escherichia coli ECRC62 | 0.34 | BNILDI_08020 | tatD | metal-dependent hydrolase | 0.21 | BNILDI_02735 | gntX | DNA utilization protein GntX | low | > 75 |
| Pseudomonas stutzeri RCH2 | 0.34 | Psest_0728 | | hydrolase, TatD family | 0.25 | Psest_0410 | | Predicted amidophosphoribosyltransferases | low | > 67 |
| Escherichia coli Nissle 1917 | 0.34 | ECOLIN_RS25130 | | metal-dependent hydrolase | 0.20 | ECOLIN_RS19495 | | DNA utilization protein GntX | low | > 55 |
| Pseudomonas sp. RS175 | 0.34 | PFR28_00103 | | putative metal-dependent hydrolase YjjV | 0.22 | PFR28_04104 | | hypothetical protein | low | > 88 |
| Escherichia coli ECOR27 | 0.34 | NOLOHH_03580 | yjjV | metal-dependent hydrolase | 0.21 | NOLOHH_08780 | gntX | DNA utilization protein GntX | low | > 75 |
| Escherichia coli BW25113 | 0.34 | b4378 | yjjV | predicted DNase (NCBI) | 0.21 | b3413 | yhgH | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli BL21 | 0.34 | ECD_04254 | | putative DNase | 0.21 | ECD_03265 | | DNA catabolic protein | low | > 61 |
| Escherichia coli ECOR38 | 0.34 | HEPCGN_09265 | tatD | metal-dependent hydrolase | 0.20 | HEPCGN_15805 | gntX | DNA utilization protein GntX | low | > 87 |
| Escherichia fergusonii Becca | 0.34 | EFB2_04068 | | putative metal-dependent hydrolase YjjV | 0.19 | EFB2_00415 | | Putative ribose-phosphate pyrophosphokinase | low | > 86 |
| Dickeya dianthicola 67-19 | 0.34 | HGI48_RS02415 | | TatD family hydrolase | 0.23 | HGI48_RS19780 | | DNA utilization protein GntX | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS19045 | | TatD family hydrolase | 0.22 | HER17_RS01550 | | DNA utilization protein GntX | low | > 75 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_0819 | | TatD-related deoxyribonuclease | 0.26 | Psyr_4688 | | Phosphoribosyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_0819 | | TatD-related deoxyribonuclease | 0.26 | Psyr_4688 | | Phosphoribosyltransferase | low | > 86 |
| Escherichia coli ECRC100 | 0.33 | OKFHMN_11260 | yjjV | metal-dependent hydrolase | 0.21 | OKFHMN_16995 | gntX | DNA utilization protein GntX | low | > 80 |
| Escherichia coli ECRC99 | 0.33 | KEDOAH_16885 | yjjV | metal-dependent hydrolase | 0.21 | KEDOAH_11145 | gntX | DNA utilization protein GntX | — | — |
| Escherichia coli ECRC98 | 0.33 | JDDGAC_14855 | yjjV | metal-dependent hydrolase | 0.21 | JDDGAC_20625 | gntX | DNA utilization protein GntX | low | > 86 |
| Escherichia coli ECRC101 | 0.33 | MCAODC_01775 | yjjV | metal-dependent hydrolase | 0.21 | MCAODC_07525 | gntX | DNA utilization protein GntX | low | > 87 |
| Escherichia coli ECRC102 | 0.33 | NIAGMN_09110 | yjjV | metal-dependent hydrolase | 0.21 | NIAGMN_14765 | gntX | DNA utilization protein GntX | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.33 | OHPLBJKB_03683 | | putative metal-dependent hydrolase YjjV | 0.21 | OHPLBJKB_00290 | | hypothetical protein | 0.36 | 31 |
| Serratia liquefaciens MT49 | 0.33 | IAI46_02900 | | TatD family hydrolase | 0.23 | IAI46_23830 | | DNA utilization protein GntX | low | > 86 |
| Lysobacter sp. OAE881 | 0.33 | ABIE51_RS12580 | | TatD family hydrolase | 0.27 | ABIE51_RS01135 | | ComF family protein | low | > 62 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_00677 | | putative metal-dependent hydrolase YjjV | 0.23 | MPMX20_04300 | | Putative ribose-phosphate pyrophosphokinase | low | > 85 |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS02520 | | metal-dependent hydrolase | 0.23 | DZA65_RS20870 | | DNA utilization protein GntX | low | > 75 |
| Dyella japonica UNC79MFTsu3.2 | 0.32 | ABZR86_RS06375 | | TatD family hydrolase | 0.31 | ABZR86_RS15860 | | ComF family protein | low | > 74 |
| Pseudomonas putida KT2440 | 0.32 | PP_0791 | | putative hydrolase | 0.28 | PP_0361 | | putative Competence protein ComF | low | > 96 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS04120 | | metal-dependent hydrolase | 0.20 | BWI76_RS26625 | | gluconate transporter periplasmic gluconate-binding protein | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.31 | LU632_RS02510 | | TatD family hydrolase | 0.19 | LU632_RS22980 | | phosphoribosyltransferase | low | > 74 |
| Pantoea sp. MT58 | 0.31 | IAI47_03395 | | metal-dependent hydrolase | 0.22 | IAI47_01785 | | DNA utilization protein GntX | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.31 | GFF1040 | | Putative deoxyribonuclease YjjV | 0.21 | GFF604 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 78 |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS16135 | | TatD family hydrolase | 0.30 | LRK54_RS10270 | | ComF family protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS15885 | | TatD family hydrolase | 0.30 | LRK55_RS09910 | | ComF family protein | 0.50 | 45 |
| Rhodanobacter sp. FW510-T8 | 0.29 | OKGIIK_08515 | | DNAase | 0.27 | OKGIIK_13640 | | Competence protein ComF | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.28 | Xcc-8004.3493.1 | | Putative deoxyribonuclease YjjV | 0.23 | Xcc-8004.506.1 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 74 |
| Marinobacter adhaerens HP15 | 0.28 | HP15_542 | | TatD-related deoxyribonuclease | 0.22 | HP15_2487 | | competence protein ComF | low | > 73 |
| Rahnella sp. WP5 | 0.26 | EX31_RS04070 | | deoxyribonuclease YjjV | 0.21 | EX31_RS04920 | | DNA utilization protein GntX | low | > 89 |
| Shewanella oneidensis MR-1 | 0.26 | SO1213 | | hydrolase, TatD family (NCBI ptt file) | 0.19 | SO4625 | comF | competence protein ComF (NCBI ptt file) | low | > 76 |
Not shown: 4 genomes with orthologs for HSERO_RS13935 only; 23 genomes with orthologs for HSERO_RS20810 only