| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS17670 | | LysR family transcriptional regulator | 1.0 | HSERO_RS17780 | | 50S rRNA methyltransferase | 0.28 | 17 |
| Paraburkholderia graminis OAS925 | 0.87 | ABIE53_005534 | | DNA-binding transcriptional LysR family regulator | 0.77 | ABIE53_001541 | | 23S rRNA (pseudouridine1915-N3)-methyltransferase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.85 | H281DRAFT_01284 | | transcriptional regulator, LysR family | 0.76 | H281DRAFT_04517 | | 23S rRNA (pseudouridine1915-N3)-methyltransferase | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.85 | BPHYT_RS21645 | | LysR family transcriptional regulator | 0.75 | BPHYT_RS06385 | | ribosomal RNA large subunit methyltransferase H | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.75 | QEN71_RS23475 | | LysR family transcriptional regulator | 0.78 | QEN71_RS24420 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.67 | RR42_RS28515 | | LysR family transcriptional regulator | 0.75 | RR42_RS04710 | | 50S rRNA methyltransferase | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_2888 | | Transcriptional regulator, LysR family | 0.56 | Ac3H11_2418 | | LSU m3Psi1915 methyltransferase RlmH | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF5537 | | Transcriptional regulator, LysR family | 0.57 | GFF4529 | | LSU m3Psi1915 methyltransferase RlmH | low | > 90 |
| Pseudomonas simiae WCS417 | 0.38 | PS417_18795 | | LysR family transcriptional regulator | 0.41 | PS417_24730 | | 50S rRNA methyltransferase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.37 | PFLU_RS20860 | | LysR family transcriptional regulator | 0.41 | PFLU_RS26660 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.37 | PFLU_RS20860 | | LysR family transcriptional regulator | 0.41 | PFLU_RS26660 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.37 | RS_RS03085 | | LysR family transcriptional regulator | 0.73 | RS_RS11015 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS00870 | | LysR family transcriptional regulator | 0.34 | AZOBR_RS04060 | | 50S rRNA methyltransferase | low | > 97 |
| Ralstonia solanacearum IBSBF1503 | 0.35 | RALBFv3_RS16915 | | LysR family transcriptional regulator | 0.74 | RALBFv3_RS03565 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 76 |
| Ralstonia solanacearum UW163 | 0.35 | UW163_RS18270 | | LysR family transcriptional regulator | 0.74 | UW163_RS10105 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS11195 | | LysR family transcriptional regulator | 0.30 | ABIE40_RS18965 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 107 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_00088 | | HTH-type transcriptional regulator HdfR | 0.32 | MPMX19_01940 | | Ribosomal RNA large subunit methyltransferase H | low | > 112 |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_1630 | | Transcriptional regulator | 0.40 | Psest_0511 | | rRNA large subunit m3Psi methyltransferase RlmH | low | > 67 |
| Pseudomonas putida KT2440 | 0.32 | PP_1863 | | Transcriptional regulator, LysR family | 0.40 | PP_4808 | | 23S rRNA m3psi1915 methyltransferase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_22455 | | Transcriptional regulator, LysR family | 0.40 | OH686_09325 | | rRNA large subunit m3Psi methyltransferase RlmH | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_2241 | | Transcriptional regulator, LysR family | 0.40 | PfGW456L13_1359 | | LSU m3Psi1915 methyltransferase RlmH | low | > 87 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_2775 | | transcriptional regulator protein, LysR family | 0.50 | HP15_604 | | conserved hypothetical protein CHP00246 | low | > 73 |
| Sinorhizobium meliloti 1021 | 0.31 | SMc04163 | | transcriptional regulator | 0.31 | SMc03781 | | rRNA large subunit methyltransferase | low | > 103 |
| Agrobacterium fabrum C58 | 0.30 | Atu1765 | | transcriptional regulator, LysR family | 0.27 | Atu2776 | | hypothetical protein | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_03135 | | LysR family transcriptional regulator | 0.40 | AO356_15305 | | 50S rRNA methyltransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.30 | Pf6N2E2_2456 | | Transcriptional regulator, LysR family | 0.40 | Pf6N2E2_4996 | | LSU m3Psi1915 methyltransferase RlmH | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.30 | Pf1N1B4_272 | | Transcriptional regulator, LysR family | 0.40 | Pf1N1B4_2691 | | LSU m3Psi1915 methyltransferase RlmH | — | — |
| Pseudomonas sp. RS175 | 0.30 | PFR28_00975 | | HTH-type transcriptional regulator HdfR | 0.41 | PFR28_03869 | | Ribosomal RNA large subunit methyltransferase H | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_19100 | | LysR family transcriptional regulator | 0.40 | AO353_06480 | | 50S rRNA methyltransferase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_3624 | | transcriptional regulator, LysR family | 0.40 | Psyr_4366 | | Protein of unknown function DUF163 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_3624 | | transcriptional regulator, LysR family | 0.40 | Psyr_4366 | | Protein of unknown function DUF163 | — | — |
| Variovorax sp. SCN45 | 0.27 | GFF5707 | | Transcriptional regulator, LysR family | 0.55 | GFF298 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) | low | > 127 |
| Rhodanobacter denitrificans FW104-10B01 | 0.27 | LRK54_RS15435 | | LysR substrate-binding domain-containing protein | 0.43 | LRK54_RS02695 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 59 |
| Caulobacter crescentus NA1000 Δfur | 0.27 | CCNA_03625 | | transcriptional regulator CztR | 0.28 | CCNA_03546 | | rRNA large subunit methyltransferase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.27 | CCNA_03625 | | transcriptional regulator CztR | 0.28 | CCNA_03546 | | rRNA large subunit methyltransferase | low | > 66 |
| Pantoea sp. MT58 | 0.27 | IAI47_18925 | | LysR family transcriptional regulator | 0.48 | IAI47_14020 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 76 |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS15155 | | LysR substrate-binding domain-containing protein | 0.43 | LRK55_RS02450 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 63 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c21890 | | transcriptional regulator, LysR family | 0.34 | PGA1_c29750 | | putative ribosomal RNA large subunit methyltransferase | low | > 62 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_07280 | | LysR family transcriptional regulator | 0.48 | IAI46_05935 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 86 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS17245 | | LysR substrate-binding domain-containing protein | 0.77 | ABZR87_RS15430 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 80 |
| Dickeya dianthicola ME23 | 0.25 | DZA65_RS14990 | | transcriptional regulator LrhA | 0.48 | DZA65_RS06565 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.25 | LU632_RS07960 | lrhA | transcriptional regulator LrhA | 0.48 | LU632_RS16370 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Dickeya dianthicola 67-19 | 0.25 | HGI48_RS14315 | | transcriptional regulator LrhA | 0.47 | HGI48_RS06220 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Shewanella sp. ANA-3 | 0.25 | Shewana3_0014 | | transcriptional regulator (RefSeq) | 0.45 | Shewana3_0996 | | rRNA large subunit methyltransferase (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.24 | MIT1002_02974 | | HTH-type transcriptional regulator GltC | 0.46 | MIT1002_01852 | | Ribosomal RNA large subunit methyltransferase H | — | — |
| Dickeya dadantii 3937 | 0.23 | DDA3937_RS14340 | | transcriptional regulator LrhA | 0.48 | DDA3937_RS06175 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Enterobacter sp. TBS_079 | 0.23 | MPMX20_03219 | | HTH-type transcriptional regulator HdfR | 0.46 | MPMX20_01295 | | Ribosomal RNA large subunit methyltransferase H | low | > 85 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS17870 | | LysR family transcriptional regulator | 0.44 | ABZR86_RS09055 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.23 | GFF1893 | | LysR family transcriptional regulator lrhA | 0.46 | GFF4549 | | LSU m3Psi1915 methyltransferase RlmH | low | > 78 |
| Enterobacter asburiae PDN3 | 0.23 | EX28DRAFT_0320 | | Transcriptional regulator | 0.47 | EX28DRAFT_2327 | | rRNA large subunit m3Psi methyltransferase RlmH | — | — |
| Klebsiella michiganensis M5al | 0.23 | BWI76_RS20200 | | transcriptional regulator LrhA | 0.47 | BWI76_RS08040 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 92 |
| Escherichia coli ECRC100 | 0.22 | OKFHMN_22830 | lrhA | transcriptional regulator LrhA | 0.45 | OKFHMN_07360 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 80 |
| Escherichia coli ECRC102 | 0.22 | NIAGMN_20600 | lrhA | transcriptional regulator LrhA | 0.45 | NIAGMN_05415 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Escherichia coli BW25113 | 0.22 | b2289 | lrhA | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | 0.46 | b0636 | ybeA | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.22 | JDDGAC_26795 | lrhA | transcriptional regulator LrhA | 0.45 | JDDGAC_11005 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Escherichia coli ECRC99 | 0.22 | KEDOAH_05365 | lrhA | transcriptional regulator LrhA | 0.45 | KEDOAH_20610 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.22 | OHPLBJKB_01416 | | HTH-type transcriptional regulator HdfR | 0.46 | OHPLBJKB_03070 | | Ribosomal RNA large subunit methyltransferase H | — | — |
| Escherichia coli ECOR38 | 0.22 | HEPCGN_22035 | lrhA | transcriptional regulator LrhA | 0.45 | HEPCGN_00915 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | 0.77 | 8 |
| Escherichia fergusonii Becca | 0.22 | EFB2_01569 | | HTH-type transcriptional regulator HdfR | 0.45 | EFB2_03456 | | Ribosomal RNA large subunit methyltransferase H | low | > 86 |
| Escherichia coli BL21 | 0.22 | ECD_02214 | | transcriptional repressor of flagellar, motility and chemotaxis genes | 0.46 | ECD_00605 | | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent | — | — |
| Escherichia coli ECOR27 | 0.22 | NOLOHH_14450 | lrhA | transcriptional regulator LrhA | 0.45 | NOLOHH_23735 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 75 |
| Escherichia coli ECRC62 | 0.22 | BNILDI_13370 | lrhA | transcriptional regulator LrhA | 0.45 | BNILDI_21745 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
| Escherichia coli ECRC101 | 0.22 | MCAODC_13870 | lrhA | transcriptional regulator LrhA | 0.45 | MCAODC_26575 | rlmH | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 87 |
| Rahnella sp. WP5 | 0.22 | EX31_RS19440 | | transcriptional regulator LrhA | 0.48 | EX31_RS23125 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 89 |
| Variovorax sp. OAS795 | 0.21 | ABID97_RS22410 | | LysR substrate-binding domain-containing protein | 0.56 | ABID97_RS16715 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | low | > 91 |
| Escherichia coli Nissle 1917 | 0.21 | ECOLIN_RS13290 | | transcriptional regulator LrhA | 0.46 | ECOLIN_RS03465 | | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | — | — |
Not shown: 4 genomes with orthologs for HSERO_RS17670 only; 29 genomes with orthologs for HSERO_RS17780 only