| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS16420 | | phosphoesterase | 1.0 | HSERO_RS15340 | | cytochrome BD oxidase subunit I | 0.31 | 6 |
| Cupriavidus basilensis FW507-4G11 | 0.65 | RR42_RS06225 | | phosphoesterase | 0.20 | RR42_RS28285 | | cytochrome D ubiquinol oxidase subunit I | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.64 | RS_RS05675 | | PHP domain-containing protein | 0.19 | RS_RS23135 | | cytochrome ubiquinol oxidase subunit I | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS14865 | | PHP domain-containing protein | 0.18 | RALBFv3_RS17840 | | cytochrome ubiquinol oxidase subunit I | low | > 76 |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS12335 | | PHP domain-containing protein | 0.18 | UW163_RS21300 | | cytochrome ubiquinol oxidase subunit I | — | — |
| Ralstonia sp. UNC404CL21Col | 0.63 | ABZR87_RS10520 | | 3',5'-nucleoside bisphosphate phosphatase | 0.19 | ABZR87_RS18840 | | cytochrome ubiquinol oxidase subunit I | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.62 | BPHYT_RS12640 | | phosphoesterase | 0.73 | BPHYT_RS02765 | | cytochrome BD oxidase subunit I | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_002754 | | putative metal-dependent phosphoesterase TrpH | 0.23 | ABIE53_006516 | | cytochrome d ubiquinol oxidase subunit I | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS18495 | | PHP domain-containing protein | 0.19 | RPSI07_RS05720 | | cytochrome ubiquinol oxidase subunit I | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.60 | QEN71_RS05915 | | 3',5'-nucleoside bisphosphate phosphatase | 0.71 | QEN71_RS01615 | | cytochrome ubiquinol oxidase subunit I | low | > 153 |
| Variovorax sp. SCN45 | 0.58 | GFF5791 | | FIG00031715: Predicted metal-dependent phosphoesterases (PHP family) | 0.58 | GFF2653 | | Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | low | > 127 |
| Variovorax sp. OAS795 | 0.57 | ABID97_RS22595 | | 3',5'-nucleoside bisphosphate phosphatase | 0.22 | ABID97_RS28650 | | cytochrome ubiquinol oxidase subunit I | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF114 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.19 | GFF217 | | Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | low | > 90 |
| Dechlorosoma suillum PS | 0.56 | Dsui_2731 | | putative metal-dependent phosphoesterase, PHP family | 0.57 | Dsui_1915 | | cytochrome bd-type quinol oxidase, subunit 1 | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS04950 | | PHP domain-containing protein | 0.57 | ABCV34_RS14400 | | cytochrome ubiquinol oxidase subunit I | 0.41 | 48 |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_0938 | | Predicted metal-dependent phosphoesterases (PHP family) | 0.66 | EX28DRAFT_2259 | | Cytochrome bd-type quinol oxidase, subunit 1 | low | > 76 |
| Rahnella sp. WP5 | 0.38 | EX31_RS09950 | | PHP domain-containing protein | 0.64 | EX31_RS23460 | | cytochrome ubiquinol oxidase subunit I | low | > 89 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_02509 | | 5'-3' exoribonuclease | 0.66 | MPMX20_01361 | | Cytochrome bd-I ubiquinol oxidase subunit 1 | low | > 85 |
| Serratia liquefaciens MT49 | 0.37 | IAI46_14015 | | PHP domain-containing protein | 0.66 | IAI46_06295 | | cytochrome ubiquinol oxidase subunit I | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.37 | AO353_18520 | | phosphoesterase | 0.22 | AO353_18070 | | cytochrome D ubiquinol oxidase subunit I | 0.28 | 40 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.37 | Psyr_3586 | | Phosphoesterase PHP, N-terminal:PHP, C-terminal | 0.22 | Psyr_4282 | | cytochrome bd quinol oxidase subunit 1 apoprotein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.37 | Psyr_3586 | | Phosphoesterase PHP, N-terminal:PHP, C-terminal | 0.22 | Psyr_4282 | | cytochrome bd quinol oxidase subunit 1 apoprotein | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.37 | GFF2721 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.66 | GFF4646 | | Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | low | > 78 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_5625 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.22 | Pf6N2E2_5068 | | putative Cytochrome bd2, subunit I | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_18495 | | phosphoesterase | 0.23 | AO356_15640 | | cytochrome D ubiquinol oxidase subunit I | low | > 104 |
| Escherichia coli ECRC98 | 0.36 | JDDGAC_05190 | yciV | 5'-3' exoribonuclease | 0.67 | JDDGAC_10500 | cydA | cytochrome ubiquinol oxidase subunit I | — | — |
| Escherichia coli ECRC99 | 0.36 | KEDOAH_26105 | yciV | 5'-3' exoribonuclease | 0.67 | KEDOAH_21120 | cydA | cytochrome ubiquinol oxidase subunit I | — | — |
| Escherichia coli ECRC101 | 0.36 | MCAODC_15620 | yciV | 5'-3' exoribonuclease | 0.67 | MCAODC_26065 | cydA | cytochrome ubiquinol oxidase subunit I | low | > 87 |
| Escherichia coli ECRC62 | 0.36 | BNILDI_18455 | yciV | 5'-3' exoribonuclease | 0.67 | BNILDI_21275 | cydA | cytochrome ubiquinol oxidase subunit I | — | — |
| Escherichia coli ECRC102 | 0.36 | NIAGMN_26815 | yciV | 5'-3' exoribonuclease | 0.67 | NIAGMN_04895 | cydA | cytochrome ubiquinol oxidase subunit I | — | — |
| Escherichia coli ECRC100 | 0.36 | OKFHMN_02645 | yciV | 5'-3' exoribonuclease | 0.67 | OKFHMN_06845 | cydA | cytochrome ubiquinol oxidase subunit I | — | — |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS10490 | | PHP domain-containing protein | 0.66 | HGI48_RS06520 | | cytochrome ubiquinol oxidase subunit I | — | — |
| Pseudomonas sp. RS175 | 0.36 | PFR28_03319 | | '5'-3' exoribonuclease' transl_table=11 | 0.23 | PFR28_03801 | | Cytochrome bd-I ubiquinol oxidase subunit 1 | low | > 88 |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS10490 | | PHP domain-containing protein | 0.66 | DDA3937_RS06480 | | cytochrome ubiquinol oxidase subunit I | low | > 74 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS11865 | | phosphatase | 0.66 | BWI76_RS08495 | | cytochrome bd-I ubiquinol oxidase subunit I | low | > 92 |
| Escherichia coli BL21 | 0.36 | ECD_01240 | | PHP domain protein | 0.67 | ECD_00692 | | cytochrome d terminal oxidase, subunit I | — | — |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_20305 | yciV | 5'-3' exoribonuclease | 0.67 | NOLOHH_23280 | cydA | cytochrome ubiquinol oxidase subunit I | — | — |
| Escherichia coli BW25113 | 0.36 | b1266 | yciV | hypothetical protein (NCBI) | 0.67 | b0733 | cydA | cytochrome d terminal oxidase, polypeptide subunit I (VIMSS) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.36 | OHPLBJKB_02418 | | '5'-3' exoribonuclease' transl_table=11 | 0.67 | OHPLBJKB_02981 | | Cytochrome bd-I ubiquinol oxidase subunit 1 | — | — |
| Escherichia coli Nissle 1917 | 0.36 | ECOLIN_RS07620 | | RNase AM | 0.67 | ECOLIN_RS03900 | | cytochrome ubiquinol oxidase subunit I | — | — |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1887 | | Predicted metal-dependent phosphoesterases (PHP family) | 0.69 | Psest_3025 | | Cytochrome bd-type quinol oxidase, subunit 1 | low | > 67 |
| Escherichia fergusonii Becca | 0.36 | EFB2_02661 | | 5'-3' exoribonuclease | 0.67 | EFB2_03374 | | Cytochrome bd-I ubiquinol oxidase subunit 1 | — | — |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS10970 | | PHP domain-containing protein | 0.66 | DZA65_RS06870 | | cytochrome ubiquinol oxidase subunit I | — | — |
| Pectobacterium carotovorum WPP14 | 0.35 | HER17_RS10910 | | PHP domain-containing protein | 0.66 | HER17_RS14905 | | cytochrome ubiquinol oxidase subunit I | low | > 75 |
| Pseudomonas sp. S08-1 | 0.35 | OH686_20795 | | Predicted metal-dependent (PHP family) | 0.21 | OH686_16125 | | Cytochrome d ubiquinol oxidase subunit I | low | > 80 |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_25545 | yciV | 5'-3' exoribonuclease | 0.67 | HEPCGN_01425 | cydA | cytochrome ubiquinol oxidase subunit I | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_3551 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.21 | Pf1N1B4_2760 | | putative Cytochrome bd2, subunit I | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.35 | PfGW456L13_4405 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.22 | PfGW456L13_1435 | | putative Cytochrome bd2, subunit I | low | > 87 |
| Shewanella amazonensis SB2B | 0.35 | Sama_2128 | | PHP-like protein (RefSeq) | 0.69 | Sama_2349 | | cytochrome bd-I oxidase subunit I (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.35 | IAI47_09195 | | PHP domain-containing protein | 0.65 | IAI47_13725 | | cytochrome ubiquinol oxidase subunit I | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.35 | CSW01_05960 | | PHP domain-containing protein | 0.68 | CSW01_09235 | | cytochrome d terminal oxidase subunit 1 | — | — |
| Shewanella oneidensis MR-1 | 0.34 | SO3017 | | TrpH family protein (NCBI ptt file) | 0.69 | SO3286 | cydA | cytochrome d ubiquinol oxidase, subunit I (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_1521 | | phosphotransferase domain-containing protein (RefSeq) | 0.69 | Shewana3_1241 | | cytochrome bd ubiquinol oxidase, subunit I (RefSeq) | low | > 73 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_2224 | | PHP C-terminal domain protein | 0.19 | HP15_1746 | | cytochrome d ubiquinol oxidase subunit I | low | > 73 |
| Shewanella loihica PV-4 | 0.34 | Shew_2250 | | phosphotransferase domain-containing protein (RefSeq) | 0.68 | Shew_1302 | | cytochrome bd ubiquinol oxidase, subunit I (RefSeq) | low | > 60 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_22275 | | phosphoesterase | 0.21 | PS417_24350 | | cytochrome D ubiquinol oxidase subunit I | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS23915 | | PHP domain-containing protein | 0.22 | PFLU_RS09380 | | cytochrome ubiquinol oxidase subunit I | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS23915 | | PHP domain-containing protein | 0.22 | PFLU_RS09380 | | cytochrome ubiquinol oxidase subunit I | low | > 109 |
| Pseudomonas putida KT2440 | 0.33 | PP_4500 | | TrpH family protein | 0.22 | PP_4651 | | Ubiquinol oxidase subunit I, cyanide insensitive | low | > 96 |
| Erwinia tracheiphila SCR3 | 0.33 | LU632_RS12750 | | PHP domain-containing protein | 0.65 | LU632_RS16065 | cydA | cytochrome ubiquinol oxidase subunit I | — | — |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_01431 | | error-prone DNA polymerase | 0.60 | MIT1002_03849 | | Cytochrome d ubiquinol oxidase subunit 1 | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.28 | MPMX26_02638 | | 5'-3' exoribonuclease | 0.68 | MPMX26_01623 | | Cytochrome bd ubiquinol oxidase subunit 1 | — | — |
| Synechococcus elongatus PCC 7942 | 0.20 | Synpcc7942_1553 | | Phosphoesterase PHP-like | 0.22 | Synpcc7942_1767 | cydA | cytochrome oxidase d subunit I | low | > 38 |
| Desulfovibrio vulgaris Miyazaki F | 0.17 | DvMF_2646 | | PHP domain protein (RefSeq) | 0.31 | DvMF_2473 | | cytochrome bd ubiquinol oxidase subunit I (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.17 | DVU0655 | | PHP domain protein (TIGR) | 0.32 | DVU3271 | cydA | cytochrome d ubiquinol oxidase, subunit I (TIGR) | low | > 55 |
Not shown: 4 genomes with orthologs for HSERO_RS16420 only; 25 genomes with orthologs for HSERO_RS15340 only