| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS16420 | | phosphoesterase | 1.0 | HSERO_RS09290 | | ribonuclease R | 0.27 | 15 |
| Cupriavidus basilensis FW507-4G11 | 0.65 | RR42_RS06225 | | phosphoesterase | 0.68 | RR42_RS13065 | | ribonuclease R | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.64 | RS_RS05675 | | PHP domain-containing protein | 0.67 | RS_RS06155 | | ribonuclease R | low | > 80 |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS12335 | | PHP domain-containing protein | 0.66 | UW163_RS12810 | | ribonuclease R | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS14865 | | PHP domain-containing protein | 0.66 | RALBFv3_RS15345 | | ribonuclease R | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.63 | ABZR87_RS10520 | | 3',5'-nucleoside bisphosphate phosphatase | 0.65 | ABZR87_RS10985 | | ribonuclease R | 0.42 | 39 |
| Burkholderia phytofirmans PsJN | 0.62 | BPHYT_RS12640 | | phosphoesterase | 0.67 | BPHYT_RS08455 | | ribonuclease R | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_002754 | | putative metal-dependent phosphoesterase TrpH | 0.68 | ABIE53_001940 | | ribonuclease R | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_00504 | | hypothetical protein | 0.67 | H281DRAFT_00712 | | RNAse R | low | > 103 |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS18495 | | PHP domain-containing protein | 0.67 | RPSI07_RS18030 | | ribonuclease R | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.60 | QEN71_RS05915 | | 3',5'-nucleoside bisphosphate phosphatase | 0.68 | QEN71_RS22925 | | ribonuclease R | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.58 | Ac3H11_1752 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.52 | Ac3H11_412 | | 3'-to-5' exoribonuclease RNase R | low | > 79 |
| Variovorax sp. SCN45 | 0.58 | GFF5791 | | FIG00031715: Predicted metal-dependent phosphoesterases (PHP family) | 0.51 | GFF399 | | 3'-to-5' exoribonuclease RNase R | 0.39 | 102 |
| Variovorax sp. OAS795 | 0.57 | ABID97_RS22595 | | 3',5'-nucleoside bisphosphate phosphatase | 0.51 | ABID97_RS17200 | | ribonuclease R | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF114 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.50 | GFF4921 | | 3'-to-5' exoribonuclease RNase R | low | > 90 |
| Dechlorosoma suillum PS | 0.56 | Dsui_2731 | | putative metal-dependent phosphoesterase, PHP family | 0.50 | Dsui_3128 | | ribonuclease R | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS04950 | | PHP domain-containing protein | 0.50 | ABCV34_RS06625 | | ribonuclease R | low | > 48 |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_0938 | | Predicted metal-dependent phosphoesterases (PHP family) | 0.39 | EX28DRAFT_3376 | | ribonuclease R | low | > 76 |
| Rahnella sp. WP5 | 0.38 | EX31_RS09950 | | PHP domain-containing protein | 0.38 | EX31_RS08785 | | ribonuclease R | low | > 89 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_02509 | | 5'-3' exoribonuclease | 0.38 | MPMX20_00460 | | Ribonuclease R | low | > 85 |
| Serratia liquefaciens MT49 | 0.37 | IAI46_14015 | | PHP domain-containing protein | 0.37 | IAI46_01660 | | ribonuclease R | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.37 | AO353_18520 | | phosphoesterase | 0.44 | AO353_13200 | | exoribonuclease R | low | > 101 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.37 | GFF2721 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.39 | GFF832 | | '3'-to-5' exoribonuclease RNase R' transl_table=11 | low | > 78 |
| Pseudomonas syringae pv. syringae B728a | 0.37 | Psyr_3586 | | Phosphoesterase PHP, N-terminal:PHP, C-terminal | 0.44 | Psyr_0579 | | RNAse R | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.37 | Psyr_3586 | | Phosphoesterase PHP, N-terminal:PHP, C-terminal | 0.44 | Psyr_0579 | | RNAse R | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_5625 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.45 | Pf6N2E2_3607 | | 3'-to-5' exoribonuclease RNase R | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_18495 | | phosphoesterase | 0.45 | AO356_08610 | | exoribonuclease R | low | > 104 |
| Escherichia coli ECRC99 | 0.36 | KEDOAH_26105 | yciV | 5'-3' exoribonuclease | 0.39 | KEDOAH_15935 | rnr | ribonuclease R | — | — |
| Escherichia coli ECRC101 | 0.36 | MCAODC_15620 | yciV | 5'-3' exoribonuclease | 0.39 | MCAODC_02735 | rnr | ribonuclease R | low | > 87 |
| Escherichia coli ECRC102 | 0.36 | NIAGMN_26815 | yciV | 5'-3' exoribonuclease | 0.39 | NIAGMN_10070 | rnr | ribonuclease R | — | — |
| Escherichia coli ECRC62 | 0.36 | BNILDI_18455 | yciV | 5'-3' exoribonuclease | 0.39 | BNILDI_07005 | rnr | ribonuclease R | 0.74 | 10 |
| Escherichia coli ECRC100 | 0.36 | OKFHMN_02645 | yciV | 5'-3' exoribonuclease | 0.39 | OKFHMN_12220 | rnr | ribonuclease R | low | > 80 |
| Escherichia coli ECRC98 | 0.36 | JDDGAC_05190 | yciV | 5'-3' exoribonuclease | 0.39 | JDDGAC_15860 | rnr | ribonuclease R | low | > 86 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS11865 | | phosphatase | 0.39 | BWI76_RS02575 | | exoribonuclease R | low | > 92 |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_20305 | yciV | 5'-3' exoribonuclease | 0.39 | NOLOHH_04485 | rnr | ribonuclease R | low | > 75 |
| Escherichia coli BW25113 | 0.36 | b1266 | yciV | hypothetical protein (NCBI) | 0.39 | b4179 | vacB | putative enzyme (VIMSS) | low | > 76 |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS10490 | | PHP domain-containing protein | 0.37 | DDA3937_RS17260 | | ribonuclease R | low | > 74 |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS10490 | | PHP domain-containing protein | 0.38 | HGI48_RS17315 | | ribonuclease R | low | > 71 |
| Escherichia coli BL21 | 0.36 | ECD_01240 | | PHP domain protein | 0.39 | ECD_04046 | | exoribonuclease R, RNase R | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.36 | OHPLBJKB_02418 | | '5'-3' exoribonuclease' transl_table=11 | 0.39 | OHPLBJKB_03863 | | Ribonuclease R | 0.34 | 63 |
| Pseudomonas sp. RS175 | 0.36 | PFR28_03319 | | '5'-3' exoribonuclease' transl_table=11 | 0.44 | PFR28_05130 | | Ribonuclease R | low | > 88 |
| Escherichia coli Nissle 1917 | 0.36 | ECOLIN_RS07620 | | RNase AM | 0.39 | ECOLIN_RS24265 | | ribonuclease R | low | > 55 |
| Escherichia fergusonii Becca | 0.36 | EFB2_02661 | | 5'-3' exoribonuclease | 0.39 | EFB2_04356 | | Ribonuclease R | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1887 | | Predicted metal-dependent phosphoesterases (PHP family) | 0.43 | Psest_0691 | | ribonuclease R | low | > 67 |
| Pectobacterium carotovorum WPP14 | 0.35 | HER17_RS10910 | | PHP domain-containing protein | 0.38 | HER17_RS03835 | | ribonuclease R | low | > 75 |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS10970 | | PHP domain-containing protein | 0.37 | DZA65_RS18405 | | ribonuclease R | low | > 75 |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_25545 | yciV | 5'-3' exoribonuclease | 0.39 | HEPCGN_10450 | rnr | ribonuclease R | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_3551 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.44 | Pf1N1B4_1403 | | 3'-to-5' exoribonuclease RNase R | low | > 87 |
| Pseudomonas sp. S08-1 | 0.35 | OH686_20795 | | Predicted metal-dependent (PHP family) | 0.43 | OH686_15910 | | ribonuclease R | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.35 | PfGW456L13_4405 | | COG0613, Predicted metal-dependent phosphoesterases (PHP family) | 0.44 | PfGW456L13_144 | | 3'-to-5' exoribonuclease RNase R | low | > 87 |
| Shewanella amazonensis SB2B | 0.35 | Sama_2128 | | PHP-like protein (RefSeq) | 0.40 | Sama_3067 | | exoribonuclease II (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.35 | IAI47_09195 | | PHP domain-containing protein | 0.39 | IAI47_02625 | | ribonuclease R | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.35 | CSW01_05960 | | PHP domain-containing protein | 0.39 | CSW01_13155 | | ribonuclease R | low | > 62 |
| Shewanella oneidensis MR-1 | 0.34 | SO3017 | | TrpH family protein (NCBI ptt file) | 0.41 | SO3935 | vacB | ribonuclease R (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.34 | Shew_2250 | | phosphotransferase domain-containing protein (RefSeq) | 0.42 | Shew_3289 | | ribonuclease R (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_2224 | | PHP C-terminal domain protein | 0.41 | HP15_622 | | exoribonuclease R | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.34 | B158DRAFT_2304 | | Predicted metal-dependent phosphoesterases (PHP family) | 0.41 | B158DRAFT_1989 | | ribonuclease R | low | > 40 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_1521 | | phosphotransferase domain-containing protein (RefSeq) | 0.42 | Shewana3_0697 | | RNAse R (RefSeq) | low | > 73 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_22275 | | phosphoesterase | 0.45 | PS417_02555 | | exoribonuclease R | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS23915 | | PHP domain-containing protein | 0.45 | PFLU_RS02625 | | ribonuclease R | 0.47 | 36 |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS23915 | | PHP domain-containing protein | 0.45 | PFLU_RS02625 | | ribonuclease R | low | > 109 |
| Pseudomonas putida KT2440 | 0.33 | PP_4500 | | TrpH family protein | 0.43 | PP_4880 | | exoribonuclease R | low | > 96 |
| Erwinia tracheiphila SCR3 | 0.33 | LU632_RS12750 | | PHP domain-containing protein | 0.38 | LU632_RS21750 | rnr | ribonuclease R | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_01431 | | error-prone DNA polymerase | 0.38 | MIT1002_03606 | | Ribonuclease R | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.28 | MPMX26_02638 | | 5'-3' exoribonuclease | 0.33 | MPMX26_02684 | | Ribonuclease R | low | > 36 |
| Synechococcus elongatus PCC 7942 | 0.20 | Synpcc7942_1553 | | Phosphoesterase PHP-like | 0.14 | Synpcc7942_1911 | zam | Cold shock protein | low | > 38 |
Not shown: 3 genomes with orthologs for HSERO_RS16420 only; 27 genomes with orthologs for HSERO_RS09290 only