Conservation of cofitness between HSERO_RS08070 and HSERO_RS08405 in Herbaspirillum seropedicae SmR1

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08070 endonuclease IV 1.0 HSERO_RS08405 membrane protein 0.33 16
Ralstonia solanacearum PSI07 0.76 RPSI07_RS19265 endonuclease III 0.41 RPSI07_RS13270 HlyC/CorC family transporter low > 81
Ralstonia solanacearum GMI1000 0.75 RS_RS04975 endonuclease III 0.41 RS_RS11430 HlyC/CorC family transporter low > 80
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS14195 endonuclease III 0.40 RALBFv3_RS03950 HlyC/CorC family transporter low > 76
Ralstonia solanacearum UW163 0.74 UW163_RS11660 endonuclease III 0.40 UW163_RS09720 HlyC/CorC family transporter — —
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS09915 endonuclease III 0.42 ABZR87_RS15885 hemolysin family protein low > 80
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS05970 endonuclease III 0.42 RR42_RS04375 magnesium transporter low > 128
Pectobacterium carotovorum WPP14 0.73 HER17_RS10860 endonuclease III 0.51 HER17_RS03970 hemolysin family protein low > 75
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS08185 endonuclease III 0.23 ABZR86_RS19900 hemolysin family protein low > 74
Escherichia coli ECOR27 0.72 NOLOHH_18045 nth endonuclease III 0.53 NOLOHH_04280 paeA Polyamine export protein — —
Escherichia coli ECOR38 0.72 HEPCGN_05910 nth endonuclease III 0.53 HEPCGN_10215 paeA Polyamine export protein low > 87
Escherichia coli ECRC62 0.72 BNILDI_16835 nth endonuclease III 0.53 BNILDI_07240 tlyC Polyamine export protein low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02093 Endonuclease III 0.53 OHPLBJKB_03816 hypothetical protein low > 73
Escherichia coli BW25113 0.72 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.53 b4218 ytfL predicted inner membrane protein (NCBI) low > 76
Escherichia coli BL21 0.72 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.53 ECD_04089 UPF0053 family inner membrane protein — —
Rahnella sp. WP5 0.72 EX31_RS06590 endonuclease III 0.52 EX31_RS08705 HlyC/CorC family transporter low > 89
Escherichia coli Nissle 1917 0.72 ECOLIN_RS09110 endonuclease III 0.53 ECOLIN_RS24495 hemolysin family protein — —
Enterobacter sp. TBS_079 0.71 MPMX20_02005 Endonuclease III 0.53 MPMX20_00495 hypothetical protein low > 85
Escherichia fergusonii Becca 0.71 EFB2_02359 Endonuclease III 0.53 EFB2_04311 hypothetical protein low > 86
Erwinia tracheiphila SCR3 0.71 LU632_RS11305 nth endonuclease III 0.51 LU632_RS02100 hemolysin family protein low > 74
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.52 EX28DRAFT_3404 Hemolysins and related proteins containing CBS domains low > 76
Escherichia coli ECRC101 0.71 MCAODC_17885 nth endonuclease III 0.53 MCAODC_02530 paeA Polyamine export protein low > 87
Serratia liquefaciens MT49 0.71 IAI46_11455 endonuclease III 0.54 IAI46_01760 HlyC/CorC family transporter low > 86
Pantoea sp. MT58 0.71 IAI47_10475 endonuclease III 0.51 IAI47_02710 HlyC/CorC family transporter low > 76
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_05145 endonuclease III 0.51 CSW01_18340 HlyC/CorC family transporter low > 62
Escherichia coli ECRC100 0.71 OKFHMN_27525 nth endonuclease III 0.53 OKFHMN_12015 paeA Polyamine export protein low > 80
Escherichia coli ECRC98 0.71 JDDGAC_02115 nth endonuclease III 0.53 JDDGAC_15655 paeA Polyamine export protein low > 86
Escherichia coli ECRC99 0.71 KEDOAH_00580 nth endonuclease III 0.53 KEDOAH_16140 paeA Polyamine export protein — —
Escherichia coli ECRC102 0.71 NIAGMN_00540 nth endonuclease III 0.53 NIAGMN_09865 paeA Polyamine export protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3641 Endonuclease III (EC 4.2.99.18) 0.52 GFF871 Putative membrane protein low > 78
Dickeya dianthicola ME23 0.71 DZA65_RS11025 endonuclease III 0.52 DZA65_RS18310 HlyC/CorC family transporter low > 75
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.28 Dsui_3105 CBS domain-containing protein low > 51
Klebsiella michiganensis M5al 0.71 BWI76_RS16385 endonuclease III 0.52 BWI76_RS02765 membrane protein — —
Acinetobacter radioresistens SK82 0.70 MPMX26_02306 Endonuclease III 0.51 MPMX26_02321 hypothetical protein low > 36
Dickeya dianthicola 67-19 0.70 HGI48_RS10545 endonuclease III 0.52 HGI48_RS17225 HlyC/CorC family transporter low > 71
Dickeya dadantii 3937 0.70 DDA3937_RS10545 endonuclease III 0.52 DDA3937_RS17170 HlyC/CorC family transporter low > 74
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.19 Xcc-8004.3156.1 Magnesium and cobalt efflux protein CorC low > 74
Shewanella loihica PV-4 0.69 Shew_2072 endonuclease III (RefSeq) 0.52 Shew_0284 hypothetical protein (RefSeq) low > 60
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS01850 endonuclease III 0.21 LRK54_RS12975 hemolysin family protein low > 59
Rhodanobacter denitrificans MT42 0.69 LRK55_RS01640 endonuclease III 0.21 LRK55_RS12675 hemolysin family protein low > 63
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_04675 nth endonuclease III 0.22 OKGIIK_02350 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family low > 52
Variovorax sp. OAS795 0.68 ABID97_RS17315 endonuclease III 0.49 ABID97_RS07170 hemolysin family protein 0.42 19
Variovorax sp. SCN45 0.68 GFF418 Endonuclease III (EC 4.2.99.18) 0.47 GFF2520 UPF0053 inner membrane protein YtfL low > 127
Shewanella amazonensis SB2B 0.68 Sama_1836 endonuclease III (RefSeq) 0.51 Sama_3284 hemolysin, putative (RefSeq) low > 62
Shewanella oneidensis MR-1 0.67 SO2514 nth endonuclease III (NCBI ptt file) 0.53 SO4351 CBS domain protein (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.25 GFF4625 Magnesium and cobalt efflux protein CorC low > 90
Shewanella sp. ANA-3 0.67 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.54 Shewana3_0353 hypothetical protein (RefSeq) low > 73
Acidovorax sp. GW101-3H11 0.66 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.47 Ac3H11_4775 Putative membrane protein low > 79
Lysobacter sp. OAE881 0.66 ABIE51_RS07560 endonuclease III 0.20 ABIE51_RS06575 hemolysin family protein low > 62
Azospirillum brasilense Sp245 0.60 AZOBR_RS01565 endonuclease III 0.27 AZOBR_RS16970 hypothetical protein low > 97
Azospirillum sp. SherDot2 0.59 MPMX19_02500 Endonuclease III 0.26 MPMX19_04101 hypothetical protein low > 112
Magnetospirillum magneticum AMB-1 0.59 AMB_RS21105 endonuclease III 0.23 AMB_RS10875 HlyC/CorC family transporter low > 64
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.23 Ga0059261_1443 Hemolysins and related proteins containing CBS domains low > 68
Bosea sp. OAE506 0.57 ABIE41_RS03410 endonuclease III 0.21 ABIE41_RS13905 hemolysin family protein low > 77
Dinoroseobacter shibae DFL-12 0.56 Dshi_3023 endonuclease III (RefSeq) 0.20 Dshi_3672 protein of unknown function DUF21 (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.53 Rru_A0153 Endonuclease III/Nth (NCBI) 0.24 Rru_A0756 hypothetical protein (NCBI) low > 58
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_03847 endonuclease III 0.21 CCNA_00369 magnesium and cobalt efflux protein corC-like protein low > 67
Caulobacter crescentus NA1000 0.51 CCNA_03847 endonuclease III 0.21 CCNA_00369 magnesium and cobalt efflux protein corC-like protein low > 66
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS15245 endonuclease III 0.21 HMPREF1058_RS12080 HlyC/CorC family transporter low > 67
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS05445 endonuclease III 0.19 HMPREF1181_RS05310 HlyC/CorC family transporter low > 56
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS11275 endonuclease III 0.21 ABI39_RS04720 HlyC/CorC family transporter low > 72
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS09755 endonuclease III 0.23 HMPREF1078_RS00430 hemolysin family protein low > 61
Bacteroides thetaiotaomicron VPI-5482 0.37 BT1671 endonuclease III (NCBI ptt file) 0.20 BT0148 putative hemolysin (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.37 BACOVA_04414 endonuclease III 0.20 BACOVA_01289 hypothetical protein low > 94

Not shown: 31 genomes with orthologs for HSERO_RS08070 only; 7 genomes with orthologs for HSERO_RS08405 only