Conservation of cofitness between HSERO_RS08070 and HSERO_RS02620 in Herbaspirillum seropedicae SmR1

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08070 endonuclease IV 1.0 HSERO_RS02620 cobalt transporter 0.36 6
Pseudomonas stutzeri RCH2 0.74 Psest_3118 endonuclease III 0.17 Psest_0573 cation diffusion facilitator family transporter low > 67
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS05970 endonuclease III 0.63 RR42_RS30535 cobalt transporter low > 128
Pectobacterium carotovorum WPP14 0.73 HER17_RS10860 endonuclease III 0.19 HER17_RS00720 CDF family cation-efflux transporter FieF low > 75
Pseudomonas sp. S08-1 0.73 OH686_03910 endonuclease III 0.16 OH686_08810 Ferrous-iron efflux pump FieF low > 80
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 0.17 Pf6N2E2_5036 Cobalt-zinc-cadmium resistance protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_04085 endonuclease III 0.17 AO353_06310 ferrous iron transporter low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.17 Psyr_4333 Cation efflux protein low > 86
Escherichia coli Nissle 1917 0.72 ECOLIN_RS09110 endonuclease III 0.17 ECOLIN_RS22550 CDF family cation-efflux transporter FieF — —
Rahnella sp. WP5 0.72 EX31_RS06590 endonuclease III 0.20 EX31_RS10790 cation diffusion facilitator family transporter low > 89
Escherichia coli ECOR27 0.72 NOLOHH_18045 nth endonuclease III 0.17 NOLOHH_05970 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02093 Endonuclease III 0.17 OHPLBJKB_04136 Ferrous-iron efflux pump FieF low > 73
Escherichia coli ECOR38 0.72 HEPCGN_05910 nth endonuclease III 0.17 HEPCGN_12480 fieF CDF family cation-efflux transporter FieF low > 87
Escherichia coli ECRC62 0.72 BNILDI_16835 nth endonuclease III 0.17 BNILDI_05555 fieF CDF family cation-efflux transporter FieF low > 75
Escherichia coli BW25113 0.72 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.17 b3915 fieF ferrous iron efflux protein F (NCBI) low > 76
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.17 Psyr_4333 Cation efflux protein low > 86
Escherichia coli BL21 0.72 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.17 ECD_03800 ferrous iron and zinc transporter — —
Pseudomonas sp. RS175 0.71 PFR28_03349 Endonuclease III 0.17 PFR28_03835 Ferrous-iron efflux pump FieF low > 88
Escherichia fergusonii Becca 0.71 EFB2_02359 Endonuclease III 0.17 EFB2_04703 Ferrous-iron efflux pump FieF low > 86
Enterobacter sp. TBS_079 0.71 MPMX20_02005 Endonuclease III 0.17 MPMX20_04553 Ferrous-iron efflux pump FieF low > 85
Erwinia tracheiphila SCR3 0.71 LU632_RS11305 nth endonuclease III 0.16 LU632_RS21845 fieF CDF family cation-efflux transporter FieF low > 74
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.53 EX28DRAFT_3666 cation diffusion facilitator family transporter low > 76
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_18345 endonuclease III 0.17 AO356_15475 ferrous iron transporter low > 104
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.18 Pf1N1B4_2726 Cobalt-zinc-cadmium resistance protein low > 87
Escherichia coli ECRC102 0.71 NIAGMN_00540 nth endonuclease III 0.17 NIAGMN_11590 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECRC99 0.71 KEDOAH_00580 nth endonuclease III 0.17 KEDOAH_14320 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECRC101 0.71 MCAODC_17885 nth endonuclease III 0.17 MCAODC_04335 fieF CDF family cation-efflux transporter FieF low > 87
Pantoea sp. MT58 0.71 IAI47_10475 endonuclease III 0.18 IAI47_00775 CDF family cation-efflux transporter FieF low > 76
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_05145 endonuclease III 0.15 CSW01_13580 cation-efflux pump FieF low > 62
Serratia liquefaciens MT49 0.71 IAI46_11455 endonuclease III 0.19 IAI46_24650 CDF family cation-efflux transporter FieF low > 86
Escherichia coli ECRC100 0.71 OKFHMN_27525 nth endonuclease III 0.17 OKFHMN_13835 fieF CDF family cation-efflux transporter FieF low > 80
Escherichia coli ECRC98 0.71 JDDGAC_02115 nth endonuclease III 0.17 JDDGAC_17460 fieF CDF family cation-efflux transporter FieF low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3641 Endonuclease III (EC 4.2.99.18) 0.17 GFF2282 Cobalt-zinc-cadmium resistance protein low > 78
Pseudomonas simiae WCS417 0.71 PS417_05655 endonuclease III 0.18 PS417_24560 ferrous iron transporter low > 88
Dickeya dianthicola ME23 0.71 DZA65_RS11025 endonuclease III 0.18 DZA65_RS21580 CDF family cation-efflux transporter FieF low > 75
Pseudomonas putida KT2440 0.71 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.17 PP_4774 divalent cation efflux transporter 0.13 34
Klebsiella michiganensis M5al 0.71 BWI76_RS16385 endonuclease III 0.59 BWI76_RS13865 cation diffusion facilitator family transporter — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS05740 endonuclease III 0.18 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.16 Dsui_0813 cation diffusion facilitator family transporter low > 51
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS05740 endonuclease III 0.18 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Pseudomonas fluorescens GW456-L13 0.70 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.17 PfGW456L13_1393 Cobalt-zinc-cadmium resistance protein 0.25 74
Dickeya dadantii 3937 0.70 DDA3937_RS10545 endonuclease III 0.19 DDA3937_RS00840 CDF family cation-efflux transporter FieF low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS10545 endonuclease III 0.18 HGI48_RS20535 CDF family cation-efflux transporter FieF low > 71
Shewanella loihica PV-4 0.69 Shew_2072 endonuclease III (RefSeq) 0.17 Shew_3568 cation diffusion facilitator family transporter (RefSeq) low > 60
Variovorax sp. SCN45 0.68 GFF418 Endonuclease III (EC 4.2.99.18) 0.16 GFF2069 Cobalt-zinc-cadmium resistance protein low > 127
Variovorax sp. OAS795 0.68 ABID97_RS17315 endonuclease III 0.13 ABID97_RS24945 cation diffusion facilitator family transporter low > 91
Shewanella amazonensis SB2B 0.68 Sama_1836 endonuclease III (RefSeq) 0.17 Sama_3430 cation efflux family protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.67 SO2514 nth endonuclease III (NCBI ptt file) 0.18 SO4475 cation efflux family protein (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.15 GFF1671 Cobalt-zinc-cadmium resistance protein low > 90
Shewanella sp. ANA-3 0.67 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.18 Shewana3_0255 cation diffusion facilitator family transporter (RefSeq) low > 73
Acidovorax sp. GW101-3H11 0.66 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.16 Ac3H11_4676 Cobalt-zinc-cadmium resistance protein low > 79
Castellaniella sp019104865 MT123 0.61 ABCV34_RS08465 endonuclease III 0.55 ABCV34_RS08935 cation diffusion facilitator family transporter low > 48
Azospirillum sp. SherDot2 0.59 MPMX19_02500 Endonuclease III 0.18 MPMX19_00714 Ferrous-iron efflux pump FieF low > 112
Magnetospirillum magneticum AMB-1 0.59 AMB_RS21105 endonuclease III 0.22 AMB_RS05165 cation transporter — —
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.13 Ga0059261_1887 cation diffusion facilitator family transporter low > 68
Phaeobacter inhibens DSM 17395 0.55 PGA1_c29040 endonuclease III 0.17 PGA1_c01130 putative cation efflux pump low > 62
Rhodospirillum rubrum S1H 0.53 Rru_A0153 Endonuclease III/Nth (NCBI) 0.20 Rru_A2628 Cation efflux protein (NCBI) low > 58
Caulobacter crescentus NA1000 0.51 CCNA_03847 endonuclease III 0.17 CCNA_03756 cation efflux family transporter low > 66
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_03847 endonuclease III 0.17 CCNA_03756 cation efflux family transporter — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.41 ABZR88_RS16725 endonuclease III 0.19 ABZR88_RS06065 cation diffusion facilitator family transporter low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_14955 endonuclease III 0.19 CA264_04200 cation-efflux pump low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1263 endonuclease III 0.19 Echvi_4463 cation diffusion facilitator family transporter low > 79
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS15245 endonuclease III 0.29 HMPREF1058_RS10965 cation transporter low > 67
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS05445 endonuclease III 0.30 HMPREF1181_RS01545 cation transporter low > 56
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS11275 endonuclease III 0.29 ABI39_RS06105 cation transporter low > 72
Bacteroides thetaiotaomicron VPI-5482 0.37 BT1671 endonuclease III (NCBI ptt file) 0.21 BT1141 cation efflux family protein (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS09755 endonuclease III 0.28 HMPREF1078_RS02220 cation diffusion facilitator family transporter low > 61
Bacteroides ovatus ATCC 8483 0.37 BACOVA_04414 endonuclease III 0.21 BACOVA_03811 cation diffusion facilitator family transporter low > 94
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 0.21 Synpcc7942_1989 cation diffusion facilitator family transporter low > 38

Not shown: 26 genomes with orthologs for HSERO_RS08070 only; 6 genomes with orthologs for HSERO_RS02620 only