Conservation of cofitness between HSERO_RS04220 and HSERO_RS02415 in Herbaspirillum seropedicae SmR1

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS04220 epoxyqueuosine reductase 1.0 HSERO_RS02415 hemolysin D 0.42 2
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG 0.47 QEN71_RS29870 efflux RND transporter periplasmic adaptor subunit low > 153
Paraburkholderia graminis OAS925 0.64 ABIE53_003363 epoxyqueuosine reductase 0.42 ABIE53_003409 membrane fusion protein (multidrug efflux system) low > 113
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS15960 iron-sulfur cluster binding protein 0.43 BPHYT_RS16175 hemolysin D low > 109
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03405 epoxyqueuosine reductase 0.48 RR42_RS32415 hemolysin D low > 128
Ralstonia solanacearum PSI07 0.63 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG 0.56 RPSI07_RS23900 efflux RND transporter periplasmic adaptor subunit low > 81
Ralstonia solanacearum GMI1000 0.63 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG 0.55 RS_RS00050 MexE family multidrug efflux RND transporter periplasmic adaptor subunit low > 80
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG 0.50 ABZR87_RS05310 efflux RND transporter periplasmic adaptor subunit low > 80
Ralstonia solanacearum UW163 0.62 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG 0.55 UW163_RS04130 MexE family multidrug efflux RND transporter periplasmic adaptor subunit
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG 0.55 RALBFv3_RS09450 MexE family multidrug efflux RND transporter periplasmic adaptor subunit low > 76
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04128 epoxyqueuosine reductase 0.42 H281DRAFT_04171 membrane fusion protein, multidrug efflux system 0.31 31
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF5474 Epoxyqueuosine (oQ) reductase QueG 0.53 GFF3839 RND efflux system, membrane fusion protein CmeA low > 90
Acidovorax sp. GW101-3H11 0.60 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG 0.47 Ac3H11_4449 RND efflux system, membrane fusion protein CmeA low > 79
Variovorax sp. OAS795 0.59 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG 0.52 ABID97_RS00320 efflux RND transporter periplasmic adaptor subunit low > 91
Castellaniella sp019104865 MT123 0.58 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG 0.38 ABCV34_RS04230 efflux RND transporter periplasmic adaptor subunit low > 48
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG 0.46 Pf1N1B4_4773 RND efflux system, membrane fusion protein CmeA
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.49 PFLU_RS13285 efflux RND transporter periplasmic adaptor subunit low > 109
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_13115 epoxyqueuosine reductase 0.46 AO353_26840 RND transporter low > 101
Pseudomonas fluorescens SBW25 0.57 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.49 PFLU_RS13285 efflux RND transporter periplasmic adaptor subunit low > 109
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.47 PfGW456L13_2955 RND efflux system, membrane fusion protein CmeA low > 87
Pseudomonas sp. RS175 0.57 PFR28_05115 Epoxyqueuosine reductase 0.44 PFR28_02462 Multidrug resistance protein MexA low > 88
Pseudomonas simiae WCS417 0.57 PS417_02460 epoxyqueuosine reductase 0.48 PS417_12590 RND transporter
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_08685 epoxyqueuosine reductase 0.46 AO356_28725 RND transporter
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG 0.46 Pf6N2E2_1660 RND efflux system, membrane fusion protein CmeA low > 103
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG 0.36 LRK54_RS02095 efflux RND transporter periplasmic adaptor subunit low > 59
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG 0.38 OKGIIK_09165 acrA efflux transporter periplasmic adaptor subunit low > 52
Variovorax sp. SCN45 0.55 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG 0.49 GFF3726 RND efflux system, membrane fusion protein low > 127
Rhodanobacter denitrificans MT42 0.55 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG 0.36 LRK55_RS01870 efflux RND transporter periplasmic adaptor subunit low > 63
Pseudomonas putida KT2440 0.55 PP_4900 epoxyqueuosine reductase 0.45 PP_3455 Multidrug efflux RND membrane fusion protein low > 96
Marinobacter adhaerens HP15 0.54 HP15_2505 iron-sulfur cluster binding protein 0.20 HP15_932 efflux transporter, RND family, MFP subunit low > 73
Enterobacter sp. TBS_079 0.53 MPMX20_00447 Epoxyqueuosine reductase 0.43 MPMX20_04174 Multidrug export protein AcrE low > 85
Enterobacter asburiae PDN3 0.53 EX28DRAFT_3363 epoxyqueuosine reductase 0.45 EX28DRAFT_3318 RND family efflux transporter, MFP subunit low > 76
Lysobacter sp. OAE881 0.53 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG 0.33 ABIE51_RS17985 efflux RND transporter periplasmic adaptor subunit low > 62
Alteromonas macleodii MIT1002 0.53 MIT1002_03794 Epoxyqueuosine reductase 0.36 MIT1002_00134 Acriflavine resistance protein A precursor low > 70
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG 0.12 CSW01_08415 efflux RND transporter periplasmic adaptor subunit low > 62
Dechlorosoma suillum PS 0.50 Dsui_3502 iron-sulfur cluster binding protein, putative 0.35 Dsui_3181 RND family efflux transporter, MFP subunit low > 51
Acinetobacter radioresistens SK82 0.48 MPMX26_01783 Epoxyqueuosine reductase 0.40 MPMX26_00690 Multidrug efflux pump subunit AcrA low > 36
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0486 iron-sulfur cluster binding protein, putative 0.33 B158DRAFT_0734 RND family efflux transporter, MFP subunit low > 40
Sinorhizobium meliloti 1021 0.34 SMc00406 4Fe-4S ferredoxin 0.42 SMc02868 multidrug efflux system protein low > 103
Rhodospirillum rubrum S1H 0.33 Rru_A0279 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) 0.44 Rru_A2050 Secretion protein HlyD (NCBI) low > 58
Agrobacterium fabrum C58 0.32 Atu0292 iron-sulfur cluster binding protein 0.40 Atu3203 RND multidrug efflux membrane permease low > 89
Rhodopseudomonas palustris CGA009 0.31 TX73_000215 tRNA epoxyqueuosine(34) reductase QueG 0.41 TX73_014170 efflux RND transporter periplasmic adaptor subunit low > 86
Dinoroseobacter shibae DFL-12 0.30 Dshi_3307 domain of unknown function DUF1730 (RefSeq) 0.13 Dshi_0916 efflux transporter, RND family, MFP subunit (RefSeq) low > 64
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_0824 iron-sulfur cluster binding protein, putative 0.21 Echvi_3741 RND family efflux transporter, MFP subunit low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_19810 epoxyqueuosine reductase 0.23 CA264_03650 MexE family multidrug efflux RND transporter periplasmic adaptor subunit 0.42 35
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG 0.23 CA265_RS23015 efflux transporter periplasmic adaptor subunit low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG 0.21 ABZR88_RS03045 efflux RND transporter periplasmic adaptor subunit low > 71
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_0530 4Fe-4S cluster binding 0.12 Synpcc7942_2368 Secretion protein HlyD low > 38
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS06835 tRNA epoxyqueuosine(34) reductase QueG 0.28 HMPREF1078_RS00005 efflux RND transporter periplasmic adaptor subunit low > 61
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3245 putative iron-sulfur cluster-binding protein (NCBI ptt file) 0.26 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) low > 81

Not shown: 39 genomes with orthologs for HSERO_RS04220 only; 7 genomes with orthologs for HSERO_RS02415 only