Conservation of cofitness between HSERO_RS16435 and HSERO_RS02260 in Herbaspirillum seropedicae SmR1

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16435 LOG family protein 1.0 HSERO_RS02260 DNA polymerase I 0.32 16
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS24290 TIGR00730 family Rossman fold protein 0.69 QEN71_RS17885 DNA polymerase I — —
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04542 hypothetical protein 0.68 H281DRAFT_06022 DNA polymerase I low > 103
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS06500 LOG family protein 0.68 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia graminis OAS925 0.57 ABIE53_001565 uncharacterized protein (TIGR00730 family) 0.68 ABIE53_004852 DNA polymerase-1 low > 113
Pseudomonas sp. S08-1 0.54 OH686_16655 Lysine decarboxylase family 0.52 OH686_12215 DNA polymerase I low > 80
Bosea sp. OAE506 0.54 ABIE41_RS21595 TIGR00730 family Rossman fold protein 0.34 ABIE41_RS03570 DNA polymerase I low > 77
Ralstonia solanacearum GMI1000 0.54 RS_RS10470 TIGR00730 family Rossman fold protein 0.71 RS_RS11195 DNA polymerase I low > 80
Ralstonia solanacearum PSI07 0.53 RPSI07_RS14205 TIGR00730 family Rossman fold protein 0.71 RPSI07_RS13480 DNA polymerase I low > 81
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_132 Lysine decarboxylase family 0.49 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas putida KT2440 0.53 PP_4871 putative lysine decarboxylase family protein 0.52 PP_0123 DNA polymerase I, 5 low > 96
Pseudomonas sp. RS175 0.53 PFR28_05145 'Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase' transl_table=11 0.50 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_3589 Lysine decarboxylase family 0.50 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_08535 LOG family protein 0.50 AO356_11465 DNA polymerase I low > 104
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS03100 TIGR00730 family Rossman fold protein 0.70 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS10625 TIGR00730 family Rossman fold protein 0.70 UW163_RS09920 DNA polymerase I — —
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_1389 Lysine decarboxylase family 0.49 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS15005 TIGR00730 family Rossman fold protein 0.70 ABZR87_RS15680 DNA polymerase I low > 80
Azospirillum brasilense Sp245 0.52 AZOBR_RS14105 LOG family protein 0.36 AZOBR_RS30685 DNA polymerase low > 97
Dechlorosoma suillum PS 0.51 Dsui_0979 TIGR00730 family protein 0.63 Dsui_0459 DNA polymerase I low > 51
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS05385 LOG family protein 0.71 RR42_RS15050 DNA polymerase I low > 128
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.3415.1 Lysine decarboxylase family 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas stutzeri RCH2 0.50 Psest_3243 TIGR00730 family protein 0.52 Psest_4219 DNA polymerase I low > 67
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_13300 LOG family protein 0.51 AO353_10930 DNA polymerase I low > 101
Lysobacter sp. OAE881 0.49 ABIE51_RS08970 TIGR00730 family Rossman fold protein 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_15135 TIGR00730 family Rossman fold protein 0.35 CA264_16535 DNA polymerase I — —
Serratia liquefaciens MT49 0.49 IAI46_14285 TIGR00730 family Rossman fold protein 0.53 IAI46_24985 DNA polymerase I low > 86
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS05935 TIGR00730 family Rossman fold protein 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS10320 TIGR00730 family Rossman fold protein 0.34 ABZR88_RS20185 DNA polymerase I low > 71
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_05925 TIGR00730 family Rossman fold protein 0.54 OKGIIK_16785 polA DNA polymerase I low > 52
Marinobacter adhaerens HP15 0.47 HP15_3835 conserved hypothetical protein 0.50 HP15_293 DNA polymerase I low > 73
Rhodanobacter denitrificans MT42 0.46 LRK55_RS00740 TIGR00730 family Rossman fold protein 0.54 LRK55_RS06585 DNA polymerase I low > 63
Acidovorax sp. GW101-3H11 0.46 Ac3H11_519 Lysine decarboxylase family 0.60 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS00965 TIGR00730 family Rossman fold protein 0.54 LRK54_RS06840 DNA polymerase I low > 59
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4273 Lysine decarboxylase family 0.59 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Dickeya dadantii 3937 0.45 DDA3937_RS17825 TIGR00730 family Rossman fold protein 0.51 DDA3937_RS00105 DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_0909 TIGR00730 family protein 0.35 Echvi_1032 DNA polymerase I low > 79
Magnetospirillum magneticum AMB-1 0.45 AMB_RS14390 TIGR00730 family Rossman fold protein 0.37 AMB_RS21305 DNA polymerase I — —
Acinetobacter radioresistens SK82 0.44 MPMX26_02735 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase 0.42 MPMX26_00574 DNA polymerase I low > 36
Dickeya dianthicola ME23 0.44 DZA65_RS18910 TIGR00730 family Rossman fold protein 0.50 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.44 HGI48_RS17765 TIGR00730 family Rossman fold protein 0.51 HGI48_RS21260 DNA polymerase I — —
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS10665 Rossman fold protein, TIGR00730 family 0.34 CA265_RS19630 DNA polymerase I low > 88
Variovorax sp. OAS795 0.43 ABID97_RS14855 TIGR00730 family Rossman fold protein 0.62 ABID97_RS09180 DNA polymerase I low > 91
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_2416 TIGR00730 family protein 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Variovorax sp. SCN45 0.42 GFF1152 Lysine decarboxylase family 0.62 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Dinoroseobacter shibae DFL-12 0.40 Dshi_1767 hypothetical protein (RefSeq) 0.37 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Bacteroides thetaiotaomicron VPI-5482 0.40 BT3224 putative lysine decarboxylase (NCBI ptt file) 0.35 BT3260 DNA polymerase I (NCBI ptt file) low > 81
Azospirillum sp. SherDot2 0.38 MPMX19_06138 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase 0.36 MPMX19_04869 DNA polymerase I low > 112
Phocaeicola dorei CL03T12C01 0.37 ABI39_RS05550 TIGR00730 family Rossman fold protein 0.33 ABI39_RS05440 DNA polymerase I — —
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS06240 TIGR00730 family Rossman fold protein 0.35 HMPREF1078_RS06335 DNA polymerase I low > 61
Bacteroides stercoris CC31F 0.37 HMPREF1181_RS01670 TIGR00730 family Rossman fold protein 0.35 HMPREF1181_RS02070 DNA polymerase I low > 56
Bacteroides ovatus ATCC 8483 0.36 BACOVA_02921 TIGR00730 family protein 0.35 BACOVA_01357 DNA-directed DNA polymerase low > 94
Castellaniella sp019104865 MT123 0.36 ABCV34_RS10940 TIGR00730 family Rossman fold protein 0.58 ABCV34_RS02195 DNA polymerase I low > 48
Fusobacterium nucleatum SB010 0.35 HUW76_07415 TIGR00730 family Rossman fold protein 0.25 HUW76_04385 DNA polymerase I low > 35
Phaeobacter inhibens DSM 17395 0.33 PGA1_c19080 TIGR00730 family protein 0.38 PGA1_c31780 DNA polymerase I low > 62
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01372 lysine decarboxylase family 0.37 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.29 CCNA_01372 lysine decarboxylase family 0.37 CCNA_03577 DNA polymerase I low > 66

Not shown: 1 genomes with orthologs for HSERO_RS16435 only; 43 genomes with orthologs for HSERO_RS02260 only