Conservation of cofitness between HSERO_RS06580 and HSERO_RS02120 in Herbaspirillum seropedicae SmR1

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS06580 benzoate transporter 1.0 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.34 10
Acinetobacter radioresistens SK82 0.51 MPMX26_01698 Inner membrane protein YdcO 0.73 MPMX26_00180 Phosphomethylpyrimidine synthase — —
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_819 Benzoate transport protein 0.75 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 87
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_5299 Benzoate transport protein 0.75 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 103
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_16870 benzoate transporter 0.75 AO356_08810 thiamine biosynthesis protein ThiC low > 104
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_29330 benzoate transporter 0.75 AO353_13010 thiamine biosynthesis protein ThiC low > 101
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1501 Benzoate transport protein 0.75 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 87
Pseudomonas stutzeri RCH2 0.42 Psest_2691 benzoate transporter 0.76 Psest_0477 thiamine biosynthesis protein ThiC low > 67
Paraburkholderia graminis OAS925 0.39 ABIE53_001417 benzoate membrane transport protein 0.86 ABIE53_002857 phosphomethylpyrimidine synthase low > 113
Lysobacter sp. OAE881 0.39 ABIE51_RS02455 benzoate/H(+) symporter BenE family transporter 0.73 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC low > 62
Pseudomonas putida KT2440 0.38 PP_3167 benzoate transport protein 0.76 PP_4922 Phosphomethylpyrimidine synthase low > 96
Rhodospirillum rubrum S1H 0.38 Rru_A1144 Benzoate membrane transport protein (NCBI) 0.58 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) low > 58
Acidovorax sp. GW101-3H11 0.38 Ac3H11_3917 Benzoate transport protein 0.68 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 79
Azospirillum sp. SherDot2 0.38 MPMX19_03070 Inner membrane protein YdcO 0.62 MPMX19_00336 Phosphomethylpyrimidine synthase low > 112
Azospirillum brasilense Sp245 0.38 AZOBR_RS19910 benzoate transporter 0.65 AZOBR_RS07940 phosphomethylpyrimidine synthase low > 97
Shewanella sp. ANA-3 0.38 Shewana3_0320 benzoate transporter (RefSeq) 0.68 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) low > 73
Dechlorosoma suillum PS 0.38 Dsui_2253 benzoate transporter 0.85 Dsui_0422 thiamine biosynthesis protein ThiC — —
Rhodopseudomonas palustris CGA009 0.37 TX73_014490 benzoate/H(+) symporter BenE family transporter 0.63 TX73_018540 phosphomethylpyrimidine synthase ThiC low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF2649 Benzoate transport protein 0.68 GFF4626 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 90
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_1839 Benzoate membrane transport protein 0.76 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_1839 Benzoate membrane transport protein 0.76 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Castellaniella sp019104865 MT123 0.37 ABCV34_RS02900 benzoate/H(+) symporter BenE family transporter 0.84 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC low > 48
Pseudomonas sp. S08-1 0.37 OH686_00595 Benzoate transport protein 0.76 OH686_15885 phosphomethylpyrimidine synthase low > 80
Serratia liquefaciens MT49 0.36 IAI46_11435 benzoate/H(+) symporter BenE family transporter 0.69 IAI46_01320 phosphomethylpyrimidine synthase ThiC low > 86
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS06050 membrane protein 0.86 BPHYT_RS13220 phosphomethylpyrimidine synthase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_00287 benzoate membrane transport protein 0.87 H281DRAFT_00395 hydroxymethylpyrimidine synthase low > 103
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS22525 benzoate/H(+) symporter BenE family transporter 0.75 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC low > 109
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.5286.1 Benzoate transport protein 0.74 Xcc-8004.1066.1 hypothetical protein low > 74
Pseudomonas fluorescens SBW25 0.36 PFLU_RS22525 benzoate/H(+) symporter BenE family transporter 0.75 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC low > 109
Rahnella sp. WP5 0.36 EX31_RS05715 benzoate/H(+) symporter BenE family transporter 0.69 EX31_RS16815 phosphomethylpyrimidine synthase ThiC low > 89
Pseudomonas simiae WCS417 0.36 PS417_20910 membrane protein 0.75 PS417_02355 thiamine biosynthesis protein ThiC low > 88
Pseudomonas sp. RS175 0.36 PFR28_01059 Inner membrane protein YdcO 0.75 PFR28_05091 Phosphomethylpyrimidine synthase low > 88
Variovorax sp. OAS795 0.36 ABID97_RS04625 benzoate/H(+) symporter BenE family transporter 0.68 ABID97_RS25235 phosphomethylpyrimidine synthase ThiC low > 91
Variovorax sp. SCN45 0.35 GFF6323 Benzoate transport protein 0.70 GFF2000 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) low > 127
Phaeobacter inhibens DSM 17395 0.35 PGA1_c29480 putative inner membrane transport protein 0.63 PGA1_c09110 thiamine biosynthesis protein ThiC low > 62
Pectobacterium carotovorum WPP14 0.35 HER17_RS21705 benzoate/H(+) symporter BenE family transporter 0.70 HER17_RS20380 phosphomethylpyrimidine synthase ThiC low > 75
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS14695 membrane protein 0.70 RR42_RS01290 thiamine biosynthesis protein ThiC low > 128
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS24590 benzoate/H(+) symporter BenE family transporter 0.87 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC low > 153
Escherichia coli Nissle 1917 0.34 ECOLIN_RS08270 BenE family transporter YdcO 0.69 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC — —
Escherichia fergusonii Becca 0.34 EFB2_02549 Inner membrane protein YdcO 0.69 EFB2_04617 Phosphomethylpyrimidine synthase low > 86
Escherichia coli ECOR38 0.33 HEPCGN_26210 ydcO BenE family transporter YdcO 0.69 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC low > 87
Escherichia coli ECRC99 0.33 KEDOAH_26830 ydcO BenE family transporter YdcO 0.69 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli BW25113 0.33 b1433 b1433 putative membrane transport protein (VIMSS) 0.69 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) low > 76
Escherichia coli ECRC102 0.33 NIAGMN_25745 ydcO BenE family transporter YdcO 0.69 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli BL21 0.33 ECD_01391 BenE family inner membrane putative transporter 0.69 ECD_03871 phosphomethylpyrimidine synthase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_02282 Inner membrane protein YdcO 0.69 OHPLBJKB_04056 Phosphomethylpyrimidine synthase low > 73
Escherichia coli ECRC100 0.33 OKFHMN_01610 ydcO BenE family transporter YdcO 0.69 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC low > 80
Escherichia coli ECOR27 0.33 NOLOHH_19285 ydcO BenE family transporter YdcO 0.69 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC low > 75
Escherichia coli ECRC98 0.33 JDDGAC_04100 ydcO BenE family transporter YdcO 0.69 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC low > 86
Escherichia coli ECRC62 0.33 BNILDI_17735 ydcO BenE family transporter YdcO 0.69 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF2596 Benzoate transport protein 0.70 GFF4198 Thiamin biosynthesis protein ThiC low > 78
Enterobacter sp. TBS_079 0.31 MPMX20_02242 Inner membrane protein YdcO 0.69 MPMX20_00217 Phosphomethylpyrimidine synthase low > 85
Pantoea sp. MT58 0.31 IAI47_10270 benzoate/H(+) symporter BenE family transporter 0.68 IAI47_18085 phosphomethylpyrimidine synthase ThiC low > 76
Klebsiella michiganensis M5al 0.31 BWI76_RS13360 benzoate transporter 0.68 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC low > 92
Enterobacter asburiae PDN3 0.31 EX28DRAFT_1224 benzoate transporter 0.69 EX28DRAFT_4536 phosphomethylpyrimidine synthase low > 76
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS14875 benzoate/H(+) symporter BenE family transporter 0.63 A4249_RS15715 phosphomethylpyrimidine synthase ThiC low > 48
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_09835 benzoate transporter 0.67 CSW01_00335 phosphomethylpyrimidine synthase low > 62
Alteromonas macleodii MIT1002 0.26 MIT1002_00747 Inner membrane protein YdcO 0.68 MIT1002_00097 Phosphomethylpyrimidine synthase low > 70
Sinorhizobium meliloti 1021 0.23 SMc02691 membrane transporter 0.64 SM_b20615 thiamine biosynthesis protein ThiC low > 103
Agrobacterium fabrum C58 0.22 Atu2265 benzoate transport protein 0.63 Atu2569 thiamine biosynthesis protein low > 89
Bosea sp. OAE506 0.22 ABIE41_RS09390 benzoate/H(+) symporter BenE family transporter 0.61 ABIE41_RS02770 phosphomethylpyrimidine synthase ThiC low > 77
Marinobacter adhaerens HP15 0.17 HP15_1094 benzoate membrane transport protein 0.79 HP15_453 thiamine biosynthesis protein thiC low > 73

Not shown: 2 genomes with orthologs for HSERO_RS06580 only; 32 genomes with orthologs for HSERO_RS02120 only