| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pectobacterium carotovorum WPP14 | 1.0 | HER17_RS00495 | | branched-chain amino acid ABC transporter substrate-binding protein | 1.0 | HER17_RS01700 | | two-component system response regulator OmpR | 0.97 | 6 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS00660 | | branched-chain amino acid ABC transporter substrate-binding protein | 1.00 | DDA3937_RS19620 | | two-component system response regulator OmpR | low | > 74 |
| Rahnella sp. WP5 | 0.88 | EX31_RS14805 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.99 | EX31_RS04800 | | two-component system response regulator OmpR | low | > 89 |
| Dickeya dianthicola 67-19 | 0.88 | HGI48_RS20730 | | high-affinity branched-chain amino acid ABC transporter substrate-binding protein | 1.00 | HGI48_RS19750 | | two-component system response regulator OmpR | low | > 71 |
| Dickeya dianthicola ME23 | 0.88 | DZA65_RS21740 | | branched-chain amino acid ABC transporter substrate-binding protein | 1.00 | DZA65_RS20840 | | two-component system response regulator OmpR | low | > 75 |
| Serratia liquefaciens MT49 | 0.87 | IAI46_00960 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.99 | IAI46_23790 | | two-component system response regulator OmpR | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.82 | LU632_RS19255 | | branched-chain amino acid ABC transporter substrate-binding protein | 1.00 | LU632_RS22940 | ompR | two-component system response regulator OmpR | 0.46 | 49 |
| Escherichia coli ECRC100 | 0.79 | OKFHMN_16740 | livK | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | OKFHMN_17035 | ompR_G63V | two-component system response regulator OmpR | low | > 80 |
| Escherichia coli ECRC99 | 0.79 | KEDOAH_11400 | livK | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | KEDOAH_11105 | ompR_G63V | two-component system response regulator OmpR | — | — |
| Escherichia coli ECRC102 | 0.79 | NIAGMN_14510 | livK | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | NIAGMN_14805 | ompR_G63V | two-component system response regulator OmpR | — | — |
| Escherichia coli ECOR27 | 0.79 | NOLOHH_08535 | livK | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | NOLOHH_08825 | ompR_G63V | two-component system response regulator OmpR | low | > 75 |
| Escherichia coli ECRC98 | 0.79 | JDDGAC_20370 | livK | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | JDDGAC_20665 | ompR_G63V | two-component system response regulator OmpR | low | > 86 |
| Escherichia coli ECRC62 | 0.79 | BNILDI_02970 | livK | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | BNILDI_02695 | ompR_G63V | two-component system response regulator OmpR | low | > 75 |
| Escherichia coli ECRC101 | 0.79 | MCAODC_07270 | livK | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | MCAODC_07565 | ompR_G63V | two-component system response regulator OmpR | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.79 | OHPLBJKB_00245 | | Leucine-specific-binding protein | 1.00 | OHPLBJKB_00298 | | Transcriptional regulatory protein OmpR | low | > 73 |
| Escherichia coli BW25113 | 0.79 | b3458 | livK | leucine transporter subunit (NCBI) | 1.00 | b3405 | ompR | osmolarity response regulator (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.79 | EFB2_00364 | | Leucine-specific-binding protein | 1.00 | EFB2_00423 | | Transcriptional regulatory protein OmpR | low | > 86 |
| Escherichia coli ECOR38 | 0.79 | HEPCGN_15560 | livK | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | HEPCGN_15845 | ompR_G63V | two-component system response regulator OmpR | low | > 87 |
| Enterobacter asburiae PDN3 | 0.79 | EX28DRAFT_4290 | | ABC-type branched-chain amino acid transport systems, periplasmic component | 1.00 | EX28DRAFT_4138 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 76 |
| Escherichia coli Nissle 1917 | 0.79 | ECOLIN_RS19775 | | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | 1.00 | ECOLIN_RS19455 | | two-component system response regulator OmpR | low | > 55 |
| Escherichia coli BL21 | 0.78 | ECD_03307 | | leucine transporter subunit | 0.99 | ECD_03257 | | response regulator in two-component regulatory system with EnvZ | low | > 61 |
| Enterobacter sp. TBS_079 | 0.78 | MPMX20_04334 | | Leucine-specific-binding protein | 0.99 | MPMX20_04292 | | Transcriptional regulatory protein OmpR | low | > 85 |
| Pantoea sp. MT58 | 0.78 | IAI47_01565 | | branched-chain amino acid ABC transporter substrate-binding protein | 1.00 | IAI47_01820 | | two-component system response regulator OmpR | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.77 | GFF545 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | 1.00 | GFF613 | | Two-component system response regulator OmpR | low | > 78 |
| Klebsiella michiganensis M5al | 0.77 | BWI76_RS26350 | | branched chain amino acid ABC transporter substrate-binding protein | 1.00 | BWI76_RS26665 | | DNA-binding response regulator | low | > 92 |
| Pseudomonas syringae pv. syringae B728a | 0.62 | Psyr_3845 | | L-leucine-binding protein / L-valine-binding protein / L-isoleucine-binding protein | 0.70 | Psyr_0258 | | Two-component response regulator OmpR | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.62 | Psyr_3845 | | L-leucine-binding protein / L-valine-binding protein / L-isoleucine-binding protein | 0.70 | Psyr_0258 | | Two-component response regulator OmpR | — | — |
| Pseudomonas stutzeri RCH2 | 0.61 | Psest_1312 | | ABC-type branched-chain amino acid transport systems, periplasmic component | 0.69 | Psest_3995 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 67 |
| Pseudomonas fluorescens FW300-N2C3 | 0.61 | AO356_05320 | | leucine ABC transporter substrate-binding protein | 0.68 | AO356_10170 | | chemotaxis protein CheY | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.61 | AO353_17125 | | leucine ABC transporter substrate-binding protein | 0.68 | AO353_11745 | | chemotaxis protein CheY | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.60 | Pf1N1B4_3218 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | 0.69 | Pf1N1B4_1772 | | Two-component system response regulator OmpR | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.60 | Pf6N2E2_2921 | | ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK (from data) | 0.68 | Pf6N2E2_3905 | | Two-component system response regulator OmpR | — | — |
| Pseudomonas sp. S08-1 | 0.60 | OH686_04605 | | Branched-chain amino acid ABC transporter, substrate-binding protein LivJ | 0.72 | OH686_11095 | | Two-component system response regulator OmpR | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.60 | PfGW456L13_4606 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | 0.68 | PfGW456L13_427 | | Two-component system response regulator OmpR | low | > 87 |
| Pseudomonas sp. RS175 | 0.59 | PFR28_00540 | | Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein | 0.68 | PFR28_04868 | | Transcriptional regulatory protein OmpR | low | > 88 |
| Pseudomonas putida KT2440 | 0.59 | PP_1141 | | branched-chain amino acids ABC transporter - periplasmic leucine binding subunit | 0.69 | PP_0246 | | two-component system DNA-binding response transcriptional dual regulator | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.59 | PFLU_RS06645 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.68 | PFLU_RS01280 | | two-component system response regulator OmpR | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.59 | PFLU_RS06645 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.68 | PFLU_RS01280 | | two-component system response regulator OmpR | — | — |
| Pseudomonas simiae WCS417 | 0.59 | PS417_06615 | | ABC transporter for branched-chain amino acids, substrate-binding component (from data) | 0.69 | PS417_01170 | | chemotaxis protein CheY | — | — |
| Marinobacter adhaerens HP15 | 0.58 | HP15_3055 | | high-affinity leucine-specific leucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system periplasmic binding protein | 0.41 | HP15_3961 | | two-component transcriptional regulator, winged helix family | low | > 73 |
| Herbaspirillum seropedicae SmR1 | 0.51 | HSERO_RS08270 | | amino acid ABC transporter substrate-binding protein | 0.60 | HSERO_RS10760 | | chemotaxis protein CheY | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS14425 | | leucine ABC transporter substrate-binding protein | 0.62 | RR42_RS07885 | | chemotaxis protein CheY | low | > 128 |
| Castellaniella sp019104865 MT123 | 0.47 | ABCV34_RS03585 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.60 | ABCV34_RS08585 | | two-component system response regulator OmpR | — | — |
| Azospirillum sp. SherDot2 | 0.38 | MPMX19_04840 | | Leu/Ile/Val-binding protein | 0.46 | MPMX19_00010 | | Transcriptional regulatory protein OmpR | low | > 112 |
| Sinorhizobium meliloti 1021 | 0.37 | SMc00078 | | Leu/Ile/Val-binding protein | 0.42 | SM_b21561 | | two component response regulator protein | low | > 103 |
| Rhodopseudomonas palustris CGA009 | 0.37 | TX73_019730 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.45 | TX73_018505 | | response regulator | low | > 86 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS15010 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.47 | AMB_RS16915 | | DNA-binding response regulator | low | > 64 |
| Bosea sp. OAE506 | 0.35 | ABIE41_RS13610 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.47 | ABIE41_RS08395 | | response regulator | low | > 77 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS14690 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.40 | ABIE40_RS24305 | | response regulator | low | > 107 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS08260 | | L-proline and D-alanine ABC transporter, substrate-binding component (from data) | 0.46 | AZOBR_RS00555 | | chemotaxis protein CheY | low | > 97 |
| Agrobacterium fabrum C58 | 0.33 | Atu2422 | | ABC transporter, substrate binding protein (amino acid) | 0.36 | Atu2206 | | two component response regulator | — | — |
| Variovorax sp. OAS795 | 0.30 | ABID97_RS27585 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.64 | ABID97_RS17265 | | two-component system response regulator OmpR | low | > 91 |
| Variovorax sp. SCN45 | 0.27 | GFF237 | | ABC-type branched-chain amino acid transport systems, periplasmic component | 0.64 | GFF408 | | Two-component system response regulator OmpR | low | > 127 |
| Desulfovibrio vulgaris Miyazaki F | 0.27 | DvMF_2607 | | Extracellular ligand-binding receptor (RefSeq) | 0.39 | DvMF_1631 | | two component transcriptional regulator, winged helix family (RefSeq) | low | > 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.25 | H281DRAFT_02161 | | amino acid/amide ABC transporter substrate-binding protein, HAAT family | 0.62 | H281DRAFT_00886 | | two component transcriptional regulator, winged helix family | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.25 | QEN71_RS00600 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.62 | QEN71_RS22030 | | two-component system response regulator OmpR | 0.48 | 103 |
| Paraburkholderia graminis OAS925 | 0.25 | ABIE53_000461 | | branched-chain amino acid transport system substrate-binding protein | 0.62 | ABIE53_002101 | | two-component system phosphate regulon response regulator OmpR | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.24 | BPHYT_RS01885 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.62 | BPHYT_RS09315 | | chemotaxis protein CheY | low | > 109 |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS04695 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.62 | RALBFv3_RS01415 | | two-component system response regulator OmpR | low | > 76 |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS08975 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.62 | UW163_RS14725 | | two-component system response regulator OmpR | — | — |
| Ralstonia solanacearum PSI07 | 0.24 | RPSI07_RS12690 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.62 | RPSI07_RS16070 | | two-component system response regulator OmpR | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.24 | RS_RS12255 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.62 | RS_RS08305 | | two-component system response regulator OmpR | — | — |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS00315 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.61 | ABZR87_RS13210 | | two-component system response regulator OmpR | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.20 | Ac3H11_4169 | | Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) | 0.66 | Ac3H11_343 | | Two-component system response regulator OmpR | — | — |
| Bifidobacterium breve UCC2003 | 0.14 | BBR_RS18075 | | Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein | 0.37 | BBR_RS19170 | | DNA-binding response regulator | low | > 34 |
| Dinoroseobacter shibae DFL-12 | 0.12 | Dshi_1522 | | Extracellular ligand-binding receptor (RefSeq) | 0.41 | Dshi_4048 | | two component transcriptional regulator, winged helix family (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.10 | PGA1_c15890 | | extracellular ligand-binding receptor | 0.39 | PGA1_c34130 | | protein PetR | — | — |
Not shown: 3 genomes with orthologs for HER17_RS00495 only; 21 genomes with orthologs for HER17_RS01700 only