Conservation of cofitness between GFF1891 and GFF5153 in Hydrogenophaga sp. GW460-11-11-14-LB1

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF1891 FIG011065: hypothetical protein 1.0 GFF5153 Ribonucleotide reductase transcriptional regulator NrdR 0.58 18
Acidovorax sp. GW101-3H11 0.70 Ac3H11_3324 FIG011065: hypothetical protein 0.73 Ac3H11_2922 Ribonucleotide reductase transcriptional regulator NrdR — —
Variovorax sp. SCN45 0.66 GFF5022 FIG011065: hypothetical protein 0.77 GFF561 Ribonucleotide reductase transcriptional regulator NrdR low > 127
Variovorax sp. OAS795 0.66 ABID97_RS04095 TSUP family transporter 0.77 ABID97_RS17895 transcriptional regulator NrdR low > 91
Ralstonia solanacearum GMI1000 0.55 RS_RS16720 membrane protein 0.68 RS_RS03665 transcriptional regulator NrdR low > 80
Ralstonia solanacearum PSI07 0.54 RPSI07_RS08365 membrane protein 0.68 RPSI07_RS20335 transcriptional regulator NrdR low > 81
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS04180 TSUP family transporter 0.68 ABZR87_RS08950 transcriptional regulator NrdR low > 80
Ralstonia solanacearum UW163 0.50 UW163_RS04705 membrane protein 0.68 UW163_RS00675 transcriptional regulator NrdR — —
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS23970 membrane protein 0.67 HSERO_RS06145 NrdR family transcriptional regulator low > 78
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS20255 membrane protein 0.68 RR42_RS15490 NrdR family transcriptional regulator low > 128
Pseudomonas putida KT2440 0.45 PP_3933 conserved membrane protein of unknown function 0.50 PP_0513 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP low > 96
Acinetobacter radioresistens SK82 0.42 MPMX26_02777 putative membrane transporter protein YfcA 0.46 MPMX26_00151 Transcriptional repressor NrdR low > 36
Dechlorosoma suillum PS 0.41 Dsui_3484 putative permease 0.64 Dsui_1266 transcriptional regulator NrdR low > 51
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_28075 hypothetical protein 0.50 AO353_06720 NrdR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_4116 FIG011065: hypothetical protein 0.50 Pf1N1B4_2648 Ribonucleotide reductase transcriptional regulator NrdR — —
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.5298.1 FIG011065: hypothetical protein 0.52 Xcc-8004.4397.1 Ribonucleotide reductase transcriptional regulator NrdR — —
Dickeya dadantii 3937 0.32 DDA3937_RS14570 TSUP family transporter 0.47 DDA3937_RS05500 transcriptional regulator NrdR low > 74
Agrobacterium fabrum C58 0.31 Atu1591 hypothetical protein 0.43 Atu1166 hypothetical protein — —
Rahnella sp. WP5 0.30 EX31_RS19675 TSUP family transporter 0.49 EX31_RS22120 transcriptional regulator NrdR low > 89
Azospirillum sp. SherDot2 0.30 MPMX19_00682 putative membrane transporter protein YfcA 0.42 MPMX19_00728 Transcriptional repressor NrdR low > 112
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00376 putative membrane spanning protein 0.46 CCNA_01420 NrdR family transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.29 CCNA_00376 putative membrane spanning protein 0.46 CCNA_01420 NrdR family transcriptional regulator low > 66
Pantoea sp. MT58 0.29 IAI47_06160 TSUP family transporter 0.48 IAI47_14775 transcriptional regulator NrdR low > 76
Erwinia tracheiphila SCR3 0.29 LU632_RS07785 sulfite exporter TauE/SafE family protein 0.47 LU632_RS18590 nrdR transcriptional regulator NrdR low > 74
Serratia liquefaciens MT49 0.29 IAI46_18015 TSUP family transporter 0.49 IAI46_04890 transcriptional regulator NrdR low > 86
Dickeya dianthicola ME23 0.29 DZA65_RS15455 TSUP family transporter 0.47 DZA65_RS05885 transcriptional regulator NrdR low > 75
Dickeya dianthicola 67-19 0.29 HGI48_RS14520 TSUP family transporter 0.47 HGI48_RS05560 transcriptional regulator NrdR low > 71
Azospirillum brasilense Sp245 0.29 AZOBR_RS10405 membrane protein 0.44 AZOBR_RS10020 NrdR family transcriptional regulator — —
Escherichia coli ECRC99 0.28 KEDOAH_05570 yfcA putative membrane transporter protein YfcA 0.49 KEDOAH_19505 nrdR transcriptional regulator NrdR — —
Escherichia coli BW25113 0.28 b2327 yfcA conserved inner membrane protein (NCBI) 0.49 b0413 ybaD hypothetical protein (NCBI) — —
Escherichia coli ECOR27 0.28 NOLOHH_14260 yfcA putative membrane transporter protein YfcA 0.49 NOLOHH_01405 nrdR transcriptional regulator NrdR low > 75
Escherichia coli Nissle 1917 0.28 ECOLIN_RS13480 sulfite exporter TauE/SafE family protein 0.49 ECOLIN_RS02500 transcriptional regulator NrdR — —
Escherichia coli ECRC101 0.28 MCAODC_13665 yfcA putative membrane transporter protein YfcA 0.49 MCAODC_27685 nrdR transcriptional regulator NrdR low > 87
Escherichia fergusonii Becca 0.28 EFB2_01531 putative membrane transporter protein YfcA 0.49 EFB2_03644 Transcriptional repressor NrdR low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_01378 putative membrane transporter protein YfcA 0.49 OHPLBJKB_03263 Transcriptional repressor NrdR low > 73
Escherichia coli ECRC100 0.28 OKFHMN_22625 yfcA putative membrane transporter protein YfcA 0.49 OKFHMN_08460 nrdR transcriptional regulator NrdR low > 80
Escherichia coli ECRC102 0.28 NIAGMN_20400 yfcA putative membrane transporter protein YfcA 0.49 NIAGMN_06515 nrdR transcriptional regulator NrdR — —
Escherichia coli BL21 0.28 ECD_02252 TauE/TSUP family inner membrane protein 0.49 ECD_00361 Nrd regulon repressor low > 61
Escherichia coli ECRC98 0.28 JDDGAC_26585 yfcA putative membrane transporter protein YfcA 0.49 JDDGAC_12115 nrdR transcriptional regulator NrdR low > 86
Escherichia coli ECOR38 0.28 HEPCGN_21830 yfcA putative membrane transporter protein YfcA 0.49 HEPCGN_07085 nrdR transcriptional regulator NrdR low > 87
Rhizobium sp. OAE497 0.28 ABIE40_RS11125 TSUP family transporter 0.40 ABIE40_RS06720 transcriptional regulator NrdR low > 107
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_4150 Predicted permeases 0.45 Ga0059261_1985 transcriptional regulator NrdR low > 68
Pectobacterium carotovorum WPP14 0.28 HER17_RS06945 sulfite exporter TauE/SafE family protein 0.46 HER17_RS15965 transcriptional regulator NrdR low > 75
Escherichia coli ECRC62 0.28 BNILDI_13180 yfcA putative membrane transporter protein YfcA 0.49 BNILDI_22820 nrdR transcriptional regulator NrdR — —
Lysobacter sp. OAE881 0.28 ABIE51_RS11860 TSUP family transporter 0.51 ABIE51_RS04625 transcriptional regulator NrdR — —
Enterobacter sp. TBS_079 0.28 MPMX20_03262 putative membrane transporter protein YfcA 0.49 MPMX20_01005 Transcriptional repressor NrdR low > 85
Enterobacter asburiae PDN3 0.27 EX28DRAFT_0277 Predicted permeases 0.49 EX28DRAFT_2557 transcriptional regulator NrdR — —
Klebsiella michiganensis M5al 0.27 BWI76_RS20425 hypothetical protein 0.48 BWI76_RS06345 transcriptional regulator NrdR — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_369 Putative membrane protein YfcA 0.49 PfGW456L13_1312 Ribonucleotide reductase transcriptional regulator NrdR low > 87
Fusobacterium nucleatum SB010 0.27 HUW76_01290 TSUP family transporter 0.44 HUW76_09070 transcriptional repressor NrdR 0.77 30
Castellaniella sp019104865 MT123 0.26 ABCV34_RS12215 TSUP family transporter 0.55 ABCV34_RS10550 transcriptional regulator NrdR low > 48
Shewanella amazonensis SB2B 0.26 Sama_1266 hypothetical protein (RefSeq) 0.48 Sama_1015 nrdR transcriptional regulator NrdR (RefSeq) low > 62
Shewanella sp. ANA-3 0.25 Shewana3_2613 hypothetical protein (RefSeq) 0.48 Shewana3_1095 nrdR transcriptional regulator NrdR (RefSeq) low > 73
Shewanella oneidensis MR-1 0.25 SO2846 conserved hypothetical protein (NCBI ptt file) 0.48 SO3470 conserved hypothetical protein TIGR00244 (NCBI ptt file) low > 76
Phaeobacter inhibens DSM 17395 0.25 PGA1_c36170 Predicted permeases 0.45 PGA1_c08860 transcriptional repressor — —
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_09295 hypothetical protein 0.48 CSW01_11565 transcriptional regulator NrdR low > 62
Shewanella loihica PV-4 0.23 Shew_2464 hypothetical protein (RefSeq) 0.47 Shew_1186 transcriptional regulator NrdR (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_25900 hypothetical protein 0.49 AO356_14925 NrdR family transcriptional regulator — —
Pseudomonas simiae WCS417 0.21 PS417_12880 membrane protein 0.50 PS417_25270 NrdR family transcriptional regulator — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS13560 TSUP family transporter 0.49 PFLU_RS26905 transcriptional regulator NrdR low > 109
Pseudomonas stutzeri RCH2 0.21 Psest_2079 Predicted permeases 0.49 Psest_3553 transcriptional regulator NrdR — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS13560 TSUP family transporter 0.49 PFLU_RS26905 transcriptional regulator NrdR low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_2454 Protein of unknown function DUF81 0.50 Psyr_4463 Protein of unknown function DUF193 low > 86
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_2454 Protein of unknown function DUF81 0.50 Psyr_4463 Protein of unknown function DUF193 low > 86
Pseudomonas sp. S08-1 0.20 OH686_03525 hypothetical protein 0.48 OH686_15690 transcriptional regulator NrdR 0.44 40
Ralstonia solanacearum IBSBF1503 0.10 RALBFv3_RS17725 sulfite exporter TauE/SafE family protein 0.68 RALBFv3_RS12890 transcriptional regulator NrdR low > 76

Not shown: 5 genomes with orthologs for GFF1891 only; 21 genomes with orthologs for GFF5153 only