Conservation of cofitness between PS417_22165 and PS417_00245 in Pseudomonas simiae WCS417

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_22165 LysR family transcriptional regulator 1.0 PS417_00245 oligopeptidase A 0.23 11
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS23790 LysR family transcriptional regulator ArgP 0.99 PFLU_RS00240 oligopeptidase A low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS23790 LysR family transcriptional regulator ArgP 0.99 PFLU_RS00240 oligopeptidase A low > 109
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_03915 LysR family transcriptional regulator 0.93 AO353_10775 oligopeptidase A low > 101
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_1782 Chromosome initiation inhibitor 0.93 PfGW456L13_624 Oligopeptidase A (EC 3.4.24.70) low > 87
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_708 Chromosome initiation inhibitor 0.94 Pf1N1B4_1844 Oligopeptidase A (EC 3.4.24.70) low > 87
Pseudomonas sp. RS175 0.90 PFR28_00608 HTH-type transcriptional regulator ArgP 0.92 PFR28_04699 Oligopeptidase A low > 88
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_2849 Chromosome initiation inhibitor 0.93 Pf6N2E2_4091 Oligopeptidase A (EC 3.4.24.70) low > 103
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_04995 LysR family transcriptional regulator 0.93 AO356_11120 oligopeptidase A low > 104
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4057 regulatory protein, LysR:LysR, substrate-binding protein 0.91 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4057 regulatory protein, LysR:LysR, substrate-binding protein 0.91 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A low > 86
Pseudomonas putida KT2440 0.84 PP_0917 Chromosome initiation inhibitor 0.90 PP_0096 oligopeptidase A low > 96
Pseudomonas sp. S08-1 0.77 OH686_07195 Transcriptional regulator ArgP, LysR family 0.83 OH686_12360 Oligopeptidase A low > 80
Pseudomonas stutzeri RCH2 0.75 Psest_1166 transcriptional regulator, ArgP family 0.80 Psest_4320 Zn-dependent oligopeptidases low > 67
Marinobacter adhaerens HP15 0.58 HP15_868 transcriptional regulator, LysR family 0.56 HP15_3759 oligopeptidase A-like protein low > 73
Ralstonia solanacearum UW163 0.41 UW163_RS20770 transcriptional regulator ArgP 0.45 UW163_RS15000 oligopeptidase A
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS18360 transcriptional regulator ArgP 0.45 RALBFv3_RS01690 oligopeptidase A low > 76
Shewanella sp. ANA-3 0.40 Shewana3_1652 chromosome replication initiation inhibitor protein (RefSeq) 0.59 Shewana3_4051 oligopeptidase A (RefSeq) low > 73
Shewanella amazonensis SB2B 0.40 Sama_2987 chromosome replication initiation inhibitor protein (RefSeq) 0.58 Sama_3546 oligopeptidase A (RefSeq) low > 62
Ralstonia solanacearum PSI07 0.39 RPSI07_RS03900 transcriptional regulator ArgP 0.44 RPSI07_RS15795 oligopeptidase A low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF5065 Chromosome initiation inhibitor 0.43 GFF4214 Oligopeptidase A (EC 3.4.24.70)
Shewanella oneidensis MR-1 0.39 SO2866 iciA chromosome initiation inhibitor (NCBI ptt file) 0.59 SO4699 prlC oligopeptidase A (NCBI ptt file) low > 76
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS14025 LysR family transcriptional regulator ArgP 0.45 ABZR87_RS13490 M3 family metallopeptidase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_04882 transcriptional regulator, LysR family 0.44 H281DRAFT_00461 oligopeptidase A Metallo peptidase. MEROPS family M03A
Paraburkholderia graminis OAS925 0.39 ABIE53_001719 LysR family transcriptional regulator (chromosome initiation inhibitor) 0.45 ABIE53_002798 oligopeptidase A low > 113
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS23610 LysR family transcriptional regulator ArgP 0.46 QEN71_RS05695 M3 family metallopeptidase low > 153
Acidovorax sp. GW101-3H11 0.38 Ac3H11_3378 chromosome replication initiation inhibitor protein 0.44 Ac3H11_4097 Oligopeptidase A (EC 3.4.24.70) low > 79
Agrobacterium fabrum C58 0.38 Atu0928 transcriptional regulator, LysR family 0.28 Atu2664 peptidyl-dipeptidase low > 89
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS07440 LysR family transcriptional regulator 0.45 BPHYT_RS12875 oligopeptidase A
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS31465 LysR family transcriptional regulator 0.47 RR42_RS07340 oligopeptidase A low > 128
Shewanella loihica PV-4 0.37 Shew_1844 chromosome replication initiation inhibitor protein (RefSeq) 0.58 Shew_3657 oligopeptidase A (RefSeq) low > 60
Dinoroseobacter shibae DFL-12 0.36 Dshi_0711 transcriptional regulator, LysR family (RefSeq) 0.23 Dshi_2973 Peptidyl-dipeptidase Dcp (RefSeq) low > 64
Variovorax sp. OAS795 0.35 ABID97_RS23875 LysR family transcriptional regulator ArgP 0.45 ABID97_RS14080 M3 family metallopeptidase low > 91
Azospirillum brasilense Sp245 0.34 AZOBR_RS01600 LysR family transcriptional regulator 0.26 AZOBR_RS23485 peptidase M3 low > 97
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_01770 Transcriptional regulator ArgP 0.48 OKGIIK_15380 dcp oligopeptidase A 0.40 33
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_02560 chromosome initiation inhibitor 0.57 CSW01_01010 oligopeptidase A low > 62
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS10990 LysR family transcriptional regulator ArgP 0.49 ABZR86_RS14940 M3 family metallopeptidase low > 74
Pectobacterium carotovorum WPP14 0.31 HER17_RS10625 HTH-type transcriptional regulator ArgP 0.56 HER17_RS21300 oligopeptidase A low > 75
Alteromonas macleodii MIT1002 0.31 MIT1002_00129 OriC replication inhibitor 0.58 MIT1002_03633 Oligopeptidase A low > 70
Phaeobacter inhibens DSM 17395 0.31 PGA1_c21740 transcriptional regulator, ArgP family 0.25 PGA1_c26590 peptidyl-dipeptidase Dcp low > 62
Rahnella sp. WP5 0.31 EX31_RS21460 LysR family transcriptional regulator ArgP 0.56 EX31_RS05165 oligopeptidase A low > 89
Serratia liquefaciens MT49 0.31 IAI46_20910 LysR family transcriptional regulator ArgP 0.56 IAI46_24210 oligopeptidase A low > 86
Dickeya dianthicola ME23 0.30 DZA65_RS19550 LysR family transcriptional regulator ArgP 0.57 DZA65_RS00035 oligopeptidase A low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF3015 Chromosome initiation inhibitor 0.57 GFF517 Oligopeptidase A (EC 3.4.24.70) low > 78
Dickeya dadantii 3937 0.30 DDA3937_RS18490 LysR family transcriptional regulator ArgP 0.58 DDA3937_RS21265 oligopeptidase A low > 74
Dickeya dianthicola 67-19 0.30 HGI48_RS18415 LysR family transcriptional regulator ArgP 0.57 HGI48_RS00045 oligopeptidase A low > 71
Erwinia tracheiphila SCR3 0.30 LU632_RS05845 LysR family transcriptional regulator ArgP 0.56 LU632_RS19470 prlC oligopeptidase A low > 74
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.1463.1 Transcriptional regulator lysR family 0.47 Xcc-8004.4539.1 Oligopeptidase A (EC 3.4.24.70) low > 74
Enterobacter sp. TBS_079 0.30 MPMX20_03773 HTH-type transcriptional regulator ArgP 0.57 MPMX20_04397 Oligopeptidase A low > 85
Enterobacter asburiae PDN3 0.30 EX28DRAFT_2967 transcriptional regulator, ArgP family 0.57 EX28DRAFT_4063 Zn-dependent oligopeptidases low > 76
Klebsiella michiganensis M5al 0.30 BWI76_RS23930 transcriptional regulator ArgP 0.57 BWI76_RS26610 oligopeptidase A low > 92
Pantoea sp. MT58 0.30 IAI47_03715 LysR family transcriptional regulator ArgP 0.56 IAI47_01345 oligopeptidase A low > 76
Escherichia coli ECRC62 0.29 BNILDI_09890 argP DNA-binding transcriptional regulator ArgP 0.57 BNILDI_03210 prlC oligopeptidase A low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00800 HTH-type transcriptional regulator ArgP 0.57 OHPLBJKB_00205 Oligopeptidase A low > 73
Escherichia coli BL21 0.29 ECD_02747 transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor 0.57 ECD_03347 oligopeptidase A low > 61
Escherichia fergusonii Becca 0.29 EFB2_00987 HTH-type transcriptional regulator ArgP 0.57 EFB2_00317 Oligopeptidase A low > 86
Escherichia coli ECOR38 0.29 HEPCGN_18750 argP DNA-binding transcriptional regulator ArgP 0.57 HEPCGN_15325 prlC oligopeptidase A low > 87
Escherichia coli ECRC98 0.29 JDDGAC_23090 argP DNA-binding transcriptional regulator ArgP 0.57 JDDGAC_20045 prlC oligopeptidase A low > 86
Escherichia coli BW25113 0.29 b2916 argP chromosome replication initiation inhibitor protein (NCBI) 0.57 b3498 prlC oligopeptidase A (NCBI) low > 76
Escherichia coli Nissle 1917 0.29 ECOLIN_RS16225 DNA-binding transcriptional regulator ArgP 0.57 ECOLIN_RS19985 oligopeptidase A
Escherichia coli ECOR27 0.29 NOLOHH_11355 argP DNA-binding transcriptional regulator ArgP 0.57 NOLOHH_08350 prlC oligopeptidase A low > 75
Escherichia coli ECRC102 0.29 NIAGMN_17215 argP DNA-binding transcriptional regulator ArgP 0.57 NIAGMN_14180 prlC oligopeptidase A
Escherichia coli ECRC99 0.29 KEDOAH_08690 argP DNA-binding transcriptional regulator ArgP 0.57 KEDOAH_11730 prlC oligopeptidase A
Escherichia coli ECRC100 0.29 OKFHMN_19450 argP DNA-binding transcriptional regulator ArgP 0.57 OKFHMN_16415 prlC oligopeptidase A low > 80
Escherichia coli ECRC101 0.29 MCAODC_09970 argP DNA-binding transcriptional regulator ArgP 0.57 MCAODC_06930 prlC oligopeptidase A low > 87
Variovorax sp. SCN45 0.29 GFF2318 Transcriptional regulator ArgP, LysR family 0.45 GFF963 Oligopeptidase A (EC 3.4.24.70) low > 127

Not shown: 5 genomes with orthologs for PS417_22165 only; 26 genomes with orthologs for PS417_00245 only