Conservation of cofitness between Psest_0536 and Psest_0477 in Pseudomonas stutzeri RCH2

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0536 thiamine-phosphate pyrophosphorylase 1.0 Psest_0477 thiamine biosynthesis protein ThiC 0.85 2
Pseudomonas sp. S08-1 0.74 OH686_09190 Thiamin-phosphate pyrophosphorylase 0.95 OH686_15885 phosphomethylpyrimidine synthase 0.75 11
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2717 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.90 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) — —
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_06355 thiamine-phosphate pyrophosphorylase 0.89 AO353_13010 thiamine biosynthesis protein ThiC 0.57 2
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_15430 thiamine-phosphate pyrophosphorylase 0.90 AO356_08810 thiamine biosynthesis protein ThiC 0.53 1
Pseudomonas sp. RS175 0.68 PFR28_03844 Thiamine-phosphate synthase 0.90 PFR28_05091 Phosphomethylpyrimidine synthase 0.92 2
Pseudomonas simiae WCS417 0.68 PS417_24605 thiamine-phosphate pyrophosphorylase 0.90 PS417_02355 thiamine biosynthesis protein ThiC 0.42 23
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1384 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.90 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.72 2
Pseudomonas fluorescens SBW25 0.68 PFLU_RS26535 thiamine phosphate synthase 0.90 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.85 15
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS26535 thiamine phosphate synthase 0.90 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.88 3
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_5023 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.90 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.64 1
Pseudomonas putida KT2440 0.65 PP_4783 Thiamine-phosphate synthase 0.90 PP_4922 Phosphomethylpyrimidine synthase — —
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_4341 thiamine-phosphate diphosphorylase 0.90 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_4341 thiamine-phosphate diphosphorylase 0.90 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Marinobacter adhaerens HP15 0.45 HP15_348 thiamine-phosphate pyrophosphorylase 0.84 HP15_453 thiamine biosynthesis protein thiC — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS17410 thiamine phosphate synthase 0.78 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC — —
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_17095 Thiamine-phosphate synthase 0.76 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC low > 52
Lysobacter sp. OAE881 0.38 ABIE51_RS17410 thiamine phosphate synthase 0.77 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC — —
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.1132.1 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.75 Xcc-8004.1066.1 hypothetical protein low > 74
Dechlorosoma suillum PS 0.33 Dsui_0663 thiamine-phosphate pyrophosphorylase 0.78 Dsui_0422 thiamine biosynthesis protein ThiC — —
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS02140 thiamine-phosphate synthase 0.78 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.59 2
Acinetobacter radioresistens SK82 0.31 MPMX26_01022 Thiamine-phosphate synthase 0.76 MPMX26_00180 Phosphomethylpyrimidine synthase — —
Castellaniella sp019104865 MT123 0.30 ABCV34_RS10745 thiamine phosphate synthase 0.76 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS10400 thiamine-phosphate synthase 0.67 AZOBR_RS07940 phosphomethylpyrimidine synthase — —
Rhodospirillum rubrum S1H 0.26 Rru_A1080 Thiamine-phosphate diphosphorylase (NCBI) 0.61 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) — —
Magnetospirillum magneticum AMB-1 0.25 AMB_RS14385 thiamine phosphate synthase 0.68 AMB_RS01125 phosphomethylpyrimidine synthase — —
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS03290 thiamine phosphate synthase 0.58 HMPREF1058_RS03280 phosphomethylpyrimidine synthase ThiC 0.84 3
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS17750 thiamine phosphate synthase 0.58 ABI39_RS17760 phosphomethylpyrimidine synthase ThiC 0.87 4
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS14675 thiamine phosphate synthase 0.57 HMPREF1181_RS14685 phosphomethylpyrimidine synthase ThiC low > 56
Caulobacter crescentus NA1000 0.22 CCNA_03373 thiamin-phosphate pyrophosphorylase 0.65 CCNA_02109 thiamine biosynthesis protein thiC — —
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_03373 thiamin-phosphate pyrophosphorylase 0.65 CCNA_02109 thiamine biosynthesis protein thiC — —
Bacteroides ovatus ATCC 8483 0.22 BACOVA_02360 thiamine-phosphate diphosphorylase 0.58 BACOVA_02358 thiamine biosynthesis protein ThiC 0.90 2
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS08830 thiamine phosphate synthase 0.75 ABZR88_RS08840 phosphomethylpyrimidine synthase ThiC 0.64 5
Bacteroides thetaiotaomicron VPI-5482 0.21 BT0652 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) 0.58 BT0650 thiamine biosynthesis protein ThiC (NCBI ptt file) 0.40 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF4199 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.72 GFF4198 Thiamin biosynthesis protein ThiC low > 78
Pectobacterium carotovorum WPP14 0.20 HER17_RS20385 thiamine phosphate synthase 0.73 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.96 1
Enterobacter asburiae PDN3 0.20 EX28DRAFT_4535 thiamine-phosphate diphosphorylase 0.71 EX28DRAFT_4536 phosphomethylpyrimidine synthase low > 76
Escherichia coli ECOR38 0.20 HEPCGN_12015 thiE thiamine phosphate synthase 0.71 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC low > 85
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_0216 thiamine-phosphate pyrophosphorylase 0.75 Echvi_3567 thiamine biosynthesis protein ThiC low > 79
Escherichia coli ECRC102 0.19 NIAGMN_11130 thiE thiamine phosphate synthase 0.72 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli BW25113 0.19 b3993 thiE thiamine-phosphate pyrophosphorylase (NCBI) 0.71 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.93 1
Escherichia coli ECOR27 0.19 NOLOHH_05525 thiE thiamine phosphate synthase 0.71 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC low > 57
Escherichia coli BL21 0.19 ECD_03870 thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) 0.71 ECD_03871 phosphomethylpyrimidine synthase low > 60
Escherichia coli ECRC98 0.19 JDDGAC_17005 thiE thiamine phosphate synthase 0.72 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC99 0.19 KEDOAH_14780 thiE thiamine phosphate synthase 0.72 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC101 0.19 OKFHMN_13380 thiE thiamine phosphate synthase 0.72 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC101 0.19 MCAODC_03880 thiE thiamine phosphate synthase 0.72 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC — —
Pantoea sp. MT58 0.19 IAI47_18090 thiamine phosphate synthase 0.72 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.62 12
Escherichia coli ECRC62 0.19 BNILDI_06000 thiE thiamine phosphate synthase 0.71 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli Nissle 1917 0.19 ECOLIN_RS23035 thiamine phosphate synthase 0.72 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_04057 Thiamine-phosphate synthase 0.71 OHPLBJKB_04056 Phosphomethylpyrimidine synthase low > 73
Klebsiella michiganensis M5al 0.19 BWI76_RS01550 thiamine phosphate synthase 0.71 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.79 1
Escherichia fergusonii Becca 0.19 EFB2_04618 Thiamine-phosphate synthase 0.72 EFB2_04617 Phosphomethylpyrimidine synthase low > 86
Mycobacterium tuberculosis H37Rv 0.19 Rv0414c Thiamine-phosphate pyrophosphorylase ThiE (TMP pyrophosphorylase) (TMP-PPASE) (thiamine-phosphate synthase) 0.54 Rv0423c Probable thiamine biosynthesis protein ThiC — —
Dickeya dadantii 3937 0.19 DDA3937_RS01170 thiamine phosphate synthase 0.72 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.95 1
Agrobacterium fabrum C58 0.19 Atu3289 thiamine-phosphate pyrophosphorylase 0.65 Atu2569 thiamine biosynthesis protein 0.88 1
Erwinia tracheiphila SCR3 0.19 LU632_RS00965 thiE thiamine phosphate synthase 0.71 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC low > 74
Dickeya dianthicola 67-19 0.19 HGI48_RS01165 thiamine phosphate synthase 0.71 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.84 3
Phaeobacter inhibens DSM 17395 0.18 PGA1_c09050 thiamine-phosphate pyrophosphorylase ThiE 0.66 PGA1_c09110 thiamine biosynthesis protein ThiC 0.86 3
Enterobacter sp. TBS_079 0.18 MPMX20_00216 Thiamine-phosphate synthase 0.71 MPMX20_00217 Phosphomethylpyrimidine synthase 0.57 2
Dickeya dianthicola ME23 0.18 DZA65_RS01210 thiamine phosphate synthase 0.71 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.95 1
Rahnella sp. WP5 0.18 EX31_RS16810 thiamine phosphate synthase 0.71 EX31_RS16815 phosphomethylpyrimidine synthase ThiC low > 89
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_20425 thiamine phosphate synthase 0.77 CA264_20435 phosphomethylpyrimidine synthase ThiC 0.85 2
Burkholderia phytofirmans PsJN 0.17 BPHYT_RS17770 thiamine-phosphate pyrophosphorylase 0.76 BPHYT_RS13220 phosphomethylpyrimidine synthase — —
Dinoroseobacter shibae DFL-12 0.17 Dshi_0911 Thiamine-phosphate diphosphorylase (RefSeq) 0.64 Dshi_4080 thiamine biosynthesis protein ThiC (RefSeq) — —
Serratia liquefaciens MT49 0.17 IAI46_01315 thiamine phosphate synthase 0.71 IAI46_01320 phosphomethylpyrimidine synthase ThiC low > 86
Bosea sp. OAE506 0.15 ABIE41_RS20180 thiamine phosphate synthase 0.63 ABIE41_RS02770 phosphomethylpyrimidine synthase ThiC — —
Sinorhizobium meliloti 1021 0.14 SM_b20618 thiamine-phosphate pyrophosphorylase 0.65 SM_b20615 thiamine biosynthesis protein ThiC low > 103
Rhodopseudomonas palustris CGA009 0.13 TX73_018535 thiamine phosphate synthase 0.65 TX73_018540 phosphomethylpyrimidine synthase ThiC — —

Not shown: 8 genomes with orthologs for Psest_0536 only; 25 genomes with orthologs for Psest_0477 only