Conservation of cofitness between Psest_0239 and Psest_3810 in Pseudomonas stutzeri RCH2

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0239 formamidopyrimidine-DNA glycosylase (fpg) 1.0 Psest_3810 orotate phosphoribosyltransferase 0.24 16
Pseudomonas sp. RS175 0.82 PFR28_04272 Formamidopyrimidine-DNA glycosylase 0.85 PFR28_04417 Orotate phosphoribosyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_2309 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.81 Pf1N1B4_2120 Orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_979 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.81 PfGW456L13_788 Orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_08320 5-hydroxymethyluracil DNA glycosylase 0.81 AO353_09245 orotate phosphoribosyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_4761 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.86 Psyr_0216 orotate phosphoribosyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_4761 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.86 Psyr_0216 orotate phosphoribosyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_4569 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.81 Pf6N2E2_4370 Orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.80 PFLU_RS29475 orotate phosphoribosyltransferase — —
Pseudomonas sp. S08-1 0.77 OH686_14125 DNA-formamidopyrimidine glycosylase 0.86 OH686_13590 Orotate phosphoribosyltransferase low > 80
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_13270 5-hydroxymethyluracil DNA glycosylase 0.80 AO356_12520 orotate phosphoribosyltransferase low > 104
Pseudomonas fluorescens SBW25 0.77 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.80 PFLU_RS29475 orotate phosphoribosyltransferase — —
Pseudomonas putida KT2440 0.77 PP_5125 Formamidopyrimidine-DNA glycosylase 0.81 PP_5291 Orotate phosphoribosyltransferase — —
Pseudomonas simiae WCS417 0.77 PS417_26870 5-hydroxymethyluracil DNA glycosylase 0.80 PS417_27795 orotate phosphoribosyltransferase low > 88
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_13060 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.61 OKGIIK_15685 pyrE orotate phosphoribosyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS13335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.61 ABZR86_RS15640 orotate phosphoribosyltransferase low > 74
Rhodanobacter denitrificans MT42 0.65 LRK55_RS10505 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.59 LRK55_RS08720 orotate phosphoribosyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS10815 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.59 LRK54_RS09190 orotate phosphoribosyltransferase — —
Alteromonas macleodii MIT1002 0.64 MIT1002_00057 Formamidopyrimidine-DNA glycosylase 0.71 MIT1002_04070 Orotate phosphoribosyltransferase — —
Serratia liquefaciens MT49 0.61 IAI46_24810 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.73 IAI46_24845 orotate phosphoribosyltransferase low > 86
Shewanella amazonensis SB2B 0.61 Sama_0117 formamidopyrimidine-DNA glycosylase (RefSeq) 0.72 Sama_0321 pyrE orotate phosphoribosyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.60 Shew_3690 formamidopyrimidine-DNA glycosylase (RefSeq) 0.73 Shew_3487 pyrE orotate phosphoribosyltransferase (RefSeq) low > 60
Lysobacter sp. OAE881 0.60 ABIE51_RS00335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.47 ABIE51_RS00065 orotate phosphoribosyltransferase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.5281.1 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.49 Xcc-8004.4884.1 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 74
Rahnella sp. WP5 0.58 EX31_RS14455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.72 EX31_RS14500 orotate phosphoribosyltransferase low > 89
Escherichia fergusonii Becca 0.58 EFB2_00178 Formamidopyrimidine-DNA glycosylase 0.71 EFB2_00171 Orotate phosphoribosyltransferase low > 86
Escherichia coli Nissle 1917 0.58 ECOLIN_RS20715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.71 ECOLIN_RS20750 orotate phosphoribosyltransferase low > 52
Escherichia coli ECRC101 0.58 OKFHMN_15635 Formamidopyrimidine-DNA glycosylase 0.71 OKFHMN_15600 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli ECRC99 0.58 KEDOAH_12515 Formamidopyrimidine-DNA glycosylase 0.71 KEDOAH_12550 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli ECRC101 0.58 MCAODC_06145 Formamidopyrimidine-DNA glycosylase 0.71 MCAODC_06110 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli ECRC98 0.58 JDDGAC_19260 Formamidopyrimidine-DNA glycosylase 0.71 JDDGAC_19225 pyrE Orotate phosphoribosyltransferase — —
Pantoea sp. MT58 0.58 IAI47_00635 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.68 IAI47_00600 orotate phosphoribosyltransferase low > 76
Escherichia coli ECRC102 0.58 NIAGMN_13395 Formamidopyrimidine-DNA glycosylase 0.71 NIAGMN_13360 pyrE Orotate phosphoribosyltransferase — —
Dickeya dadantii 3937 0.58 DDA3937_RS20500 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.73 DDA3937_RS20535 orotate phosphoribosyltransferase low > 74
Escherichia coli ECRC62 0.58 BNILDI_04000 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.71 BNILDI_04035 pyrE Orotate phosphoribosyltransferase — —
Dickeya dianthicola 67-19 0.58 HGI48_RS00715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.70 HGI48_RS00680 orotate phosphoribosyltransferase low > 71
Dickeya dianthicola ME23 0.58 DZA65_RS00770 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.71 DZA65_RS00735 orotate phosphoribosyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_00067 Formamidopyrimidine-DNA glycosylase 0.71 OHPLBJKB_00060 Orotate phosphoribosyltransferase low > 73
Escherichia coli BW25113 0.58 b3635 mutM formamidopyrimidine-DNA glycosylase (NCBI) 0.71 b3642 pyrE orotate phosphoribosyltransferase (NCBI) low > 76
Escherichia coli BL21 0.58 ECD_03492 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase 0.71 ECD_03499 orotate phosphoribosyltransferase low > 60
Shewanella oneidensis MR-1 0.58 SO4726 mutM formamidopyrimidine-DNA glycosylase (NCBI ptt file) 0.72 SO4255 pyrE orotate phosphoribosyltransferase (NCBI ptt file) low > 76
Escherichia coli ECOR38 0.58 HEPCGN_14460 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.71 HEPCGN_14420 pyrE Orotate phosphoribosyltransferase low > 85
Escherichia coli ECOR27 0.57 NOLOHH_07515 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.71 NOLOHH_07480 pyrE Orotate phosphoribosyltransferase low > 57
Pectobacterium carotovorum WPP14 0.57 HER17_RS20815 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.72 HER17_RS20850 orotate phosphoribosyltransferase low > 75
Erwinia tracheiphila SCR3 0.57 LU632_RS21975 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.69 LU632_RS22015 pyrE orotate phosphoribosyltransferase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF374 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.71 GFF367 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 78
Klebsiella michiganensis M5al 0.57 BWI76_RS27330 DNA-formamidopyrimidine glycosylase 0.72 BWI76_RS27385 orotate phosphoribosyltransferase low > 92
Marinobacter adhaerens HP15 0.56 HP15_3493 formamidopyrimidine-DNA glycosylase 0.67 HP15_298 orotate phosphoribosyltransferase low > 73
Enterobacter sp. TBS_079 0.56 MPMX20_00100 Formamidopyrimidine-DNA glycosylase 0.70 MPMX20_00093 Orotate phosphoribosyltransferase low > 85
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_01175 formamidopyrimidine-DNA glycosylase 0.72 CSW01_01120 orotate phosphoribosyltransferase low > 62
Shewanella sp. ANA-3 0.55 Shewana3_4084 formamidopyrimidine-DNA glycosylase (RefSeq) 0.71 Shewana3_3776 pyrE orotate phosphoribosyltransferase (RefSeq) low > 73
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3885 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.71 EX28DRAFT_3892 orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS02040 formamidopyrimidine-DNA glycosylase 0.56 RR42_RS01225 orotate phosphoribosyltransferase — —
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS19545 formamidopyrimidine-DNA glycosylase 0.58 HSERO_RS23380 orotate phosphoribosyltransferase — —
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0778 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.64 B158DRAFT_0786 orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Acinetobacter radioresistens SK82 0.51 MPMX26_02486 Formamidopyrimidine-DNA glycosylase 0.55 MPMX26_02937 Orotate phosphoribosyltransferase 0.38 22
Ralstonia solanacearum GMI1000 0.50 RS_RS01975 formamidopyrimidine-DNA glycosylase 0.53 RS_RS00685 orotate phosphoribosyltransferase — —
Ralstonia solanacearum PSI07 0.49 RPSI07_RS22175 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.53 RPSI07_RS23295 orotate phosphoribosyltransferase — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS11125 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.53 RALBFv3_RS10075 orotate phosphoribosyltransferase — —
Ralstonia solanacearum UW163 0.49 UW163_RS02455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.53 UW163_RS03505 orotate phosphoribosyltransferase — —
Variovorax sp. SCN45 0.47 GFF2353 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.51 GFF5065 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 127
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS07015 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.53 ABZR87_RS05590 orotate phosphoribosyltransferase low > 80
Castellaniella sp019104865 MT123 0.44 ABCV34_RS09265 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.59 ABCV34_RS10890 orotate phosphoribosyltransferase — —
Dechlorosoma suillum PS 0.44 Dsui_1031 formamidopyrimidine-DNA glycosylase Fpg 0.59 Dsui_0873 orotate phosphoribosyltransferase — —
Variovorax sp. OAS795 0.41 ABID97_RS23725 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.50 ABID97_RS03910 orotate phosphoribosyltransferase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF825 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.52 GFF1882 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 90

Not shown: 22 genomes with orthologs for Psest_0239 only; 4 genomes with orthologs for Psest_3810 only