Conservation of cofitness between PS417_21010 and PS417_16570 in Pseudomonas simiae WCS417

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_21010 ribonuclease activity regulator protein RraA 1.0 PS417_16570 isocitrate lyase 0.40 6
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.99 PFLU_RS18610 isocitrate lyase 0.49 1
Pseudomonas fluorescens SBW25 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.99 PFLU_RS18610 isocitrate lyase 0.80 6
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_00850 ribonuclease activity regulator protein RraA 0.99 AO353_27735 isocitrate lyase 0.31 33
Pseudomonas sp. RS175 0.94 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.99 PFR28_02625 Isocitrate lyase 0.39 8
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_02815 ribonuclease activity regulator protein RraA 0.99 AO356_22080 isocitrate lyase 0.40 11
Pseudomonas putida KT2440 0.93 PP_2084 Putative regulator of ribonuclease activity 0.97 PP_4116 isocitrate lyase 0.23 3
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.98 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) low > 103
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.99 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) 0.45 29
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.99 Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) low > 87
Pseudomonas sp. S08-1 0.91 OH686_01650 Ribonuclease E inhibitor RraA 0.14 OH686_00170 Isocitrate lyase low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_2315 RraA famliy 0.15 Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) low > 67
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2092 Protein of unknown function 1935 0.97 Psyr_3196 isocitrate lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2092 Protein of unknown function 1935 0.97 Psyr_3196 isocitrate lyase low > 86
Marinobacter adhaerens HP15 0.70 HP15_2228 ribonuclease activity regulator protein RraA 0.14 HP15_3234 isocitrate lyase low > 73
Shewanella loihica PV-4 0.59 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) 0.78 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) — —
Shewanella sp. ANA-3 0.59 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) 0.78 Shewana3_2942 isocitrate lyase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) 0.78 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) low > 76
Dechlorosoma suillum PS 0.58 Dsui_0010 RraA family protein 0.72 Dsui_0011 isocitrate lyase low > 51
Shewanella amazonensis SB2B 0.57 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) 0.78 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) low > 62
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA 0.66 Xcc-8004.311.1 Isocitrate lyase (EC 4.1.3.1) low > 74
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_13500 ribonuclease E activity regulator RraA 0.78 CSW01_03830 isocitrate lyase low > 62
Escherichia coli ECRC99 0.54 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.73 KEDOAH_14895 aceA isocitrate lyase — —
Escherichia coli ECRC98 0.54 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.73 JDDGAC_16890 aceA isocitrate lyase — —
Escherichia coli ECRC101 0.54 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.73 MCAODC_03765 aceA isocitrate lyase — —
Escherichia coli ECOR27 0.54 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.72 NOLOHH_05410 aceA isocitrate lyase low > 57
Escherichia coli BL21 0.54 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.72 ECD_03887 isocitrate lyase low > 60
Escherichia coli BW25113 0.54 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.72 b4015 aceA isocitrate lyase (NCBI) low > 76
Escherichia coli ECOR38 0.54 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.72 HEPCGN_11905 aceA isocitrate lyase low > 85
Escherichia coli ECRC101 0.54 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.73 OKFHMN_13265 aceA isocitrate lyase — —
Escherichia fergusonii Becca 0.54 EFB2_04689 Regulator of ribonuclease activity A 0.72 EFB2_04595 Isocitrate lyase low > 86
Escherichia coli ECRC62 0.54 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.72 BNILDI_06110 aceA isocitrate lyase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.72 OHPLBJKB_04035 Isocitrate lyase low > 73
Escherichia coli Nissle 1917 0.54 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.72 ECOLIN_RS26870 isocitrate lyase — —
Escherichia coli ECRC102 0.54 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.73 NIAGMN_11015 aceA isocitrate lyase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2311 Ribonuclease E inhibitor RraA 0.72 GFF1352 Isocitrate lyase (EC 4.1.3.1) low > 78
Pectobacterium carotovorum WPP14 0.54 HER17_RS00840 ribonuclease E activity regulator RraA 0.72 HER17_RS02295 isocitrate lyase low > 75
Enterobacter sp. TBS_079 0.54 MPMX20_04540 Regulator of ribonuclease activity A 0.72 MPMX20_00232 Isocitrate lyase low > 85
Klebsiella michiganensis M5al 0.54 BWI76_RS00740 ribonuclease E activity regulator RraA 0.72 BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) (from data) low > 92
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4402 regulator of ribonuclease activity A 0.72 EX28DRAFT_4329 isocitrate lyase low > 76
Serratia liquefaciens MT49 0.54 IAI46_24585 ribonuclease E activity regulator RraA 0.72 IAI46_23190 isocitrate lyase low > 86
Rahnella sp. WP5 0.54 EX31_RS14255 ribonuclease E activity regulator RraA 0.72 EX31_RS11745 isocitrate lyase low > 89
Dickeya dadantii 3937 0.52 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.72 DDA3937_RS19055 isocitrate lyase low > 74
Dickeya dianthicola 67-19 0.52 HGI48_RS20470 ribonuclease E activity regulator RraA 0.72 HGI48_RS19145 isocitrate lyase low > 71
Dickeya dianthicola ME23 0.51 DZA65_RS21515 ribonuclease E activity regulator RraA 0.72 DZA65_RS20265 isocitrate lyase low > 75
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS06240 ribonuclease E activity regulator RraA 0.70 QEN71_RS06270 isocitrate lyase low > 153
Azospirillum brasilense Sp245 0.49 AZOBR_RS17130 ribonuclease 0.56 AZOBR_RS02405 isocitrate lyase — —
Lysobacter sp. OAE881 0.49 ABIE51_RS04140 ribonuclease E activity regulator RraA 0.68 ABIE51_RS00190 isocitrate lyase — —
Pantoea sp. MT58 0.48 IAI47_00840 ribonuclease E activity regulator RraA 0.68 IAI47_18005 isocitrate lyase low > 76
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS12215 ribonuclease 0.69 RR42_RS12200 isocitrate lyase low > 128
Ralstonia solanacearum PSI07 0.46 RPSI07_RS17355 ribonuclease E inhibitor RraA 0.69 RPSI07_RS17335 isocitrate lyase low > 81
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS10555 ribonuclease 0.72 HSERO_RS10565 isocitrate lyase low > 78
Azospirillum sp. SherDot2 0.46 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.58 MPMX19_05830 Isocitrate lyase 0.30 72
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS00130 ribonuclease 0.69 RALBFv3_RS00150 isocitrate lyase low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS13460 ribonuclease 0.69 UW163_RS13480 isocitrate lyase — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS12315 ribonuclease 0.71 BPHYT_RS12285 isocitrate lyase — —
Acidovorax sp. GW101-3H11 0.45 Ac3H11_2834 Ribonuclease E inhibitor RraA 0.71 Ac3H11_2831 Isocitrate lyase (EC 4.1.3.1) (from data) low > 79
Mycobacterium tuberculosis H37Rv 0.43 Rv3853 Regulator of RNase E activity a RraA 0.61 Rv0467 Isocitrate lyase Icl (isocitrase) (isocitratase) — —
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS11580 ribonuclease E activity regulator RraA 0.68 ABZR87_RS11590 isocitrate lyase low > 80
Ralstonia solanacearum GMI1000 0.43 RS_RS06790 ribonuclease E inhibitor RraA 0.69 RS_RS06810 isocitrate lyase low > 80
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.71 GFF4829 Isocitrate lyase (EC 4.1.3.1) — —

Not shown: 3 genomes with orthologs for PS417_21010 only; 18 genomes with orthologs for PS417_16570 only