Conservation of cofitness between Psest_0998 and Psest_3118 in Pseudomonas stutzeri RCH2

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0998 poly(A) polymerase 1.0 Psest_3118 endonuclease III 0.25 13
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_14395 poly(A) polymerase 0.88 AO353_04085 endonuclease III low > 101
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_16070 poly(A) polymerase 0.88 AO356_18345 endonuclease III low > 104
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.88 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.88 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) low > 103
Pseudomonas sp. RS175 0.77 PFR28_03719 Poly(A) polymerase I 0.88 PFR28_03349 Endonuclease III low > 88
Pseudomonas simiae WCS417 0.77 PS417_23900 poly(A) polymerase 0.87 PS417_05655 endonuclease III low > 88
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.88 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas fluorescens SBW25 0.76 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.87 PFLU_RS05740 endonuclease III low > 109
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.87 PFLU_RS05740 endonuclease III low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_0830 Poly(A) polymerase 0.86 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_0830 Poly(A) polymerase 0.86 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas sp. S08-1 0.76 OH686_17255 Poly(A) polymerase 0.91 OH686_03910 endonuclease III low > 80
Pseudomonas putida KT2440 0.72 PP_4697 poly(A) polymerase 0.87 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites low > 96
Marinobacter adhaerens HP15 0.47 HP15_326 polyA polymerase 0.80 HP15_1285 endonuclease III low > 73
Alteromonas macleodii MIT1002 0.43 MIT1002_03692 Poly(A) polymerase I precursor 0.33 MIT1002_01251 Endonuclease III low > 70
Shewanella sp. ANA-3 0.43 Shewana3_3406 poly(A) polymerase (RefSeq) 0.68 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) low > 73
Shewanella amazonensis SB2B 0.43 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.68 Sama_1836 endonuclease III (RefSeq) low > 62
Shewanella oneidensis MR-1 0.43 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.69 SO2514 nth endonuclease III (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.43 Shew_3131 poly(A) polymerase (RefSeq) 0.68 Shew_2072 endonuclease III (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.70 CSW01_05145 endonuclease III low > 62
Dickeya dadantii 3937 0.42 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.68 DDA3937_RS10545 endonuclease III low > 74
Dickeya dianthicola ME23 0.42 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.69 DZA65_RS11025 endonuclease III low > 75
Serratia liquefaciens MT49 0.42 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.70 IAI46_11455 endonuclease III low > 86
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.68 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) low > 74
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03620 poly(A) polymerase 0.67 BPHYT_RS06080 endonuclease IV low > 109
Dickeya dianthicola 67-19 0.42 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.69 HGI48_RS10545 endonuclease III low > 71
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_0058 poly(A) polymerase 0.78 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 40
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS17235 poly(A) polymerase 0.72 RR42_RS05970 endonuclease III low > 128
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3732 poly(A) polymerase 0.70 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 76
Enterobacter sp. TBS_079 0.41 MPMX20_00829 Poly(A) polymerase I 0.71 MPMX20_02005 Endonuclease III low > 85
Lysobacter sp. OAE881 0.41 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.65 ABIE51_RS07560 endonuclease III low > 62
Pectobacterium carotovorum WPP14 0.41 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.71 HER17_RS10860 endonuclease III low > 75
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB 0.69 RALBFv3_RS14195 endonuclease III low > 76
Ralstonia solanacearum GMI1000 0.41 RS_RS13165 polynucleotide adenylyltransferase PcnB 0.70 RS_RS04975 endonuclease III low > 80
Klebsiella michiganensis M5al 0.41 BWI76_RS05005 polynucleotide adenylyltransferase 0.70 BWI76_RS16385 endonuclease III — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.69 ABCV34_RS08465 endonuclease III low > 48
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.70 GFF3641 Endonuclease III (EC 4.2.99.18) low > 78
Escherichia coli BW25113 0.40 b0143 pcnB poly(A) polymerase I (VIMSS) 0.70 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) low > 76
Escherichia coli Nissle 1917 0.40 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.70 ECOLIN_RS09110 endonuclease III — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.69 LRK55_RS01640 endonuclease III low > 63
Escherichia coli ECRC101 0.40 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.69 MCAODC_17885 nth endonuclease III — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.69 LRK54_RS01850 endonuclease III low > 59
Escherichia fergusonii Becca 0.40 EFB2_03901 Poly(A) polymerase I 0.70 EFB2_02359 Endonuclease III low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03519 Poly(A) polymerase I 0.70 OHPLBJKB_02093 Endonuclease III low > 73
Escherichia coli ECRC62 0.40 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.70 BNILDI_16835 nth endonuclease III — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB 0.71 RPSI07_RS19265 endonuclease III low > 81
Escherichia coli ECOR27 0.40 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.70 NOLOHH_18045 nth endonuclease III — —
Escherichia coli ECRC98 0.40 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.69 JDDGAC_02115 nth endonuclease III — —
Pantoea sp. MT58 0.40 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.71 IAI47_10475 endonuclease III low > 76
Escherichia coli BL21 0.40 ECD_00142 poly(A) polymerase 0.70 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) — —
Escherichia coli ECRC102 0.40 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.69 NIAGMN_00540 nth endonuclease III — —
Escherichia coli ECRC99 0.40 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.69 KEDOAH_00580 nth endonuclease III — —
Escherichia coli ECRC101 0.40 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.69 OKFHMN_27525 nth endonuclease III — —
Escherichia coli ECOR38 0.40 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.70 HEPCGN_05910 nth endonuclease III low > 85
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.69 ABZR87_RS09915 endonuclease III low > 80
Erwinia tracheiphila SCR3 0.40 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.72 LU632_RS11305 nth endonuclease III low > 74
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.68 OKGIIK_04675 nth endonuclease III low > 52
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.68 ABZR86_RS08185 endonuclease III low > 74
Dechlorosoma suillum PS 0.39 Dsui_1515 poly(A) polymerase 0.70 Dsui_2985 endonuclease III low > 51
Acidovorax sp. GW101-3H11 0.36 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.65 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF3438 Poly(A) polymerase (EC 2.7.7.19) 0.65 GFF4003 Endonuclease III (EC 4.2.99.18) low > 90
Acinetobacter radioresistens SK82 0.33 MPMX26_00543 Poly(A) polymerase I 0.70 MPMX26_02306 Endonuclease III low > 36

Not shown: 0 genomes with orthologs for Psest_0998 only; 33 genomes with orthologs for Psest_3118 only