| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF2043 | | Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster | 1.0 | GFF2040 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | 0.95 | 1 |
| Paraburkholderia graminis OAS925 | 0.50 | ABIE53_001806 | | gamma-glutamylputrescine oxidase | 0.40 | ABIE53_004748 | | GntR family transcriptional regulator/MocR family aminotransferase | low | > 113 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS12365 | | FAD-binding oxidoreductase | 0.33 | ABID97_RS21960 | | PLP-dependent aminotransferase family protein | low | > 91 |
| Burkholderia phytofirmans PsJN | 0.48 | BPHYT_RS23125 | | FAD-dependent oxidoreductase | 0.42 | BPHYT_RS22440 | | DNA-binding protein | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS12970 | | FAD-binding oxidoreductase | 0.41 | QEN71_RS17355 | | PLP-dependent aminotransferase family protein | low | > 153 |
| Azospirillum brasilense Sp245 | 0.42 | AZOBR_RS08855 | | FAD-dependent oxidoreductase | 0.30 | AZOBR_RS19915 | | GntR family transcriptional regulator | low | > 97 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_04887 | | Gamma-glutamylputrescine oxidoreductase | 0.36 | MPMX19_03847 | | HTH-type transcriptional regulatory protein GabR | low | > 112 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_809 | | Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) | 0.31 | PfGW456L13_733 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_27720 | | FAD-dependent oxidoreductase | 0.30 | PS417_28165 | | GntR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS29395 | | FAD-binding oxidoreductase | 0.31 | PFLU_RS29850 | | PLP-dependent aminotransferase family protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS29395 | | FAD-binding oxidoreductase | 0.31 | PFLU_RS29850 | | PLP-dependent aminotransferase family protein | low | > 109 |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS10690 | | gamma-glutamylputrescine oxidoreductase | 0.38 | BWI76_RS26380 | | decarboxylase | low | > 92 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_0232 | | gamma-glutamylputrescine oxidase | 0.31 | Psyr_5056 | | transcriptional regulator, GntR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_0232 | | gamma-glutamylputrescine oxidase | 0.31 | Psyr_5056 | | transcriptional regulator, GntR family | low | > 86 |
| Serratia liquefaciens MT49 | 0.40 | IAI46_10540 | | FAD-binding oxidoreductase | 0.37 | IAI46_22170 | | PLP-dependent aminotransferase family protein | low | > 86 |
| Pseudomonas sp. RS175 | 0.40 | PFR28_04402 | | Gamma-glutamylputrescine oxidoreductase | 0.29 | PFR28_04508 | | HTH-type transcriptional regulatory protein GabR | low | > 88 |
| Enterobacter asburiae PDN3 | 0.40 | EX28DRAFT_1502 | | Glycine/D-amino acid oxidases (deaminating) | 0.29 | EX28DRAFT_2501 | | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs | low | > 76 |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_09170 | | FAD-dependent oxidoreductase | 0.31 | AO353_09990 | | GntR family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_4388 | | Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) | 0.29 | Pf6N2E2_4288 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | low | > 103 |
| Shewanella oneidensis MR-1 | 0.39 | SO1264 | | hypothetical oxidoreductase (NCBI ptt file) | 0.10 | SO2282 | | transcriptional regulator, GntR family (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_6047 | | Nucleoside-diphosphate-sugar epimerases | 0.32 | Pf1N1B4_2018 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.39 | AO356_12605 | | FAD-dependent oxidoreductase | 0.31 | AO356_12070 | | GntR family transcriptional regulator | low | > 104 |
| Escherichia coli ECRC101 | 0.38 | OKFHMN_02425 | puuB | gamma-glutamylputrescine oxidase | 0.24 | OKFHMN_20855 | aRO8 | DNA-binding transcriptional regulator | — | — |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_26350 | puuB | gamma-glutamylputrescine oxidase | 0.24 | KEDOAH_07285 | aRO8 | DNA-binding transcriptional regulator | — | — |
| Escherichia coli ECRC101 | 0.38 | MCAODC_15845 | puuB | gamma-glutamylputrescine oxidase | 0.24 | MCAODC_11375 | aRO8 | DNA-binding transcriptional regulator | — | — |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_25775 | puuB | gamma-glutamylputrescine oxidase | 0.23 | HEPCGN_20050 | aRO8 | DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain | low | > 85 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_04970 | puuB | gamma-glutamylputrescine oxidase | 0.24 | JDDGAC_24515 | aRO8 | DNA-binding transcriptional regulator | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_26595 | puuB | gamma-glutamylputrescine oxidase | 0.24 | NIAGMN_18620 | aRO8 | DNA-binding transcriptional regulator | — | — |
| Pseudomonas putida KT2440 | 0.38 | PP_3146 | | putative Oxidoreductase | 0.31 | PP_5342 | | Transcriptional regulator, GntR family | low | > 96 |
| Pantoea sp. MT58 | 0.38 | IAI47_07110 | | FAD-binding oxidoreductase | 0.35 | IAI47_19480 | | PLP-dependent aminotransferase family protein | 0.47 | 9 |
| Pseudomonas sp. S08-1 | 0.38 | OH686_22830 | | Gamma-glutamyl-putrescine oxidase | 0.30 | OH686_13310 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase | low | > 80 |
| Rahnella sp. WP5 | 0.37 | EX31_RS17910 | | FAD-binding oxidoreductase | 0.40 | EX31_RS00090 | | PLP-dependent aminotransferase family protein | low | > 89 |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A1019 | | FAD dependent oxidoreductase (NCBI) | 0.29 | Rru_A1143 | | regulatory protein GntR (NCBI) | low | > 58 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_944 | | FAD dependent oxidoreductase | 0.27 | HP15_2761 | | transcriptional regulator, GntR family with aminotransferase domain protein | low | > 73 |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c11510 | | gamma-glutamylputrescine oxidoreductase PuuB | 0.26 | PGA1_262p01530 | | transcriptional regulator, GntR family | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.33 | SMc01972 | | oxidoreductase | 0.15 | SM_b21525 | | transcriptional regulator | low | > 103 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_03219 | | gamma-glutamylputrescine oxidase | 0.40 | H281DRAFT_03509 | | transcriptional regulator, GntR family | low | > 103 |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_2227 | | FAD dependent oxidoreductase (RefSeq) | 0.27 | Dshi_0609 | | transcriptional regulator, GntR family with aminotransferase domain (RefSeq) | low | > 64 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS03205 | | FAD-binding oxidoreductase | 0.25 | ABIE40_RS04930 | | PLP-dependent aminotransferase family protein | low | > 107 |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS09380 | | FAD-binding oxidoreductase | 0.27 | ABIE51_RS05585 | | PLP-dependent aminotransferase family protein | low | > 62 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.26 | GFF3084 | | FIG00553873: hypothetical protein | 0.25 | GFF1580 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | low | > 78 |
| Dyella japonica UNC79MFTsu3.2 | 0.26 | ABZR86_RS05520 | | FAD-binding oxidoreductase | 0.35 | ABZR86_RS20415 | | PLP-dependent aminotransferase family protein | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.25 | LRK55_RS17925 | | FAD-binding oxidoreductase | 0.23 | LRK55_RS01135 | | PLP-dependent aminotransferase family protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.25 | LRK54_RS18070 | | FAD-binding oxidoreductase | 0.23 | LRK54_RS01370 | | PLP-dependent aminotransferase family protein | low | > 59 |
| Acinetobacter radioresistens SK82 | 0.23 | MPMX26_02004 | | Gamma-glutamylputrescine oxidoreductase | 0.36 | MPMX26_02006 | | HTH-type transcriptional regulatory protein GabR | — | — |
| Ralstonia sp. UNC404CL21Col | 0.22 | ABZR87_RS05800 | | FAD-binding oxidoreductase | 0.38 | ABZR87_RS05185 | | PLP-dependent aminotransferase family protein | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS01275 | | FAD-dependent oxidoreductase | 0.41 | HSERO_RS05425 | | decarboxylase | 0.29 | 12 |
| Ralstonia solanacearum IBSBF1503 | 0.21 | RALBFv3_RS09245 | | FAD-binding oxidoreductase | 0.40 | RALBFv3_RS09550 | | PLP-dependent aminotransferase family protein | low | > 76 |
| Ralstonia solanacearum UW163 | 0.21 | UW163_RS04345 | | FAD-binding oxidoreductase | 0.40 | UW163_RS04030 | | PLP-dependent aminotransferase family protein | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS24610 | | FAD-dependent oxidoreductase | 0.41 | RR42_RS21340 | | DNA-binding protein | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.19 | RPSI07_RS08030 | | FAD-binding oxidoreductase | 0.39 | RPSI07_RS23800 | | PLP-dependent aminotransferase family protein | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.19 | RS_RS17075 | | FAD-binding oxidoreductase | 0.39 | RS_RS00150 | | PLP-dependent aminotransferase family protein | low | > 80 |
| Rhodopseudomonas palustris CGA009 | 0.19 | TX73_013660 | | FAD-dependent oxidoreductase | 0.33 | TX73_007155 | | PLP-dependent aminotransferase family protein | low | > 86 |
| Variovorax sp. SCN45 | 0.18 | GFF1857 | | FIG00553873: hypothetical protein | 0.34 | GFF1662 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | low | > 127 |
| Dickeya dianthicola 67-19 | 0.13 | HGI48_RS09905 | | FAD-dependent oxidoreductase | 0.39 | HGI48_RS11865 | | PLP-dependent aminotransferase family protein | low | > 71 |
| Dickeya dianthicola ME23 | 0.13 | DZA65_RS10240 | | FAD-dependent oxidoreductase | 0.38 | DZA65_RS12410 | | PLP-dependent aminotransferase family protein | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.12 | HER17_RS21315 | | FAD-binding oxidoreductase | 0.38 | HER17_RS09875 | | PLP-dependent aminotransferase family protein | 0.65 | 15 |
| Dickeya dadantii 3937 | 0.12 | DDA3937_RS09900 | | FAD-dependent oxidoreductase | 0.38 | DDA3937_RS11835 | | PLP-dependent aminotransferase family protein | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.10 | ABCV34_RS06250 | | FAD-binding oxidoreductase | 0.38 | ABCV34_RS01775 | | PLP-dependent aminotransferase family protein | low | > 48 |
Not shown: 19 genomes with orthologs for GFF2043 only; 10 genomes with orthologs for GFF2040 only