Conservation of cofitness between GFF3883 and GFF1741 in Hydrogenophaga sp. GW460-11-11-14-LB1

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 GFF1741 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) 0.55 9
Acidovorax sp. GW101-3H11 0.75 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.53 Ac3H11_1849 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 79
Variovorax sp. SCN45 0.71 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.78 GFF1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) low > 127
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.80 ABZR87_RS03395 4-hydroxyphenylpyruvate dioxygenase low > 80
Ralstonia solanacearum GMI1000 0.52 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.79 RS_RS15585 4-hydroxyphenylpyruvate dioxygenase low > 80
Ralstonia solanacearum PSI07 0.52 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.79 RPSI07_RS09575 4-hydroxyphenylpyruvate dioxygenase low > 81
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.80 RALBFv3_RS07685 4-hydroxyphenylpyruvate dioxygenase low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.80 UW163_RS05940 4-hydroxyphenylpyruvate dioxygenase — —
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS14825 23S rRNA methyltransferase 0.59 HSERO_RS08335 4-hydroxyphenylpyruvate dioxygenase low > 78
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS13170 23S rRNA methyltransferase 0.52 RR42_RS33500 4-hydroxyphenylpyruvate dioxygenase low > 128
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS09125 23S rRNA methyltransferase 0.77 BPHYT_RS18295 4-hydroxyphenylpyruvate dioxygenase low > 109
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 QEN71_RS28440 4-hydroxyphenylpyruvate dioxygenase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.77 H281DRAFT_05849 4-hydroxyphenylpyruvate dioxygenase low > 103
Castellaniella sp019104865 MT123 0.46 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 ABCV34_RS09775 4-hydroxyphenylpyruvate dioxygenase low > 48
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.46 Xcc-8004.578.1 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) low > 74
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.51 B158DRAFT_1446 4-hydroxyphenylpyruvate dioxygenase low > 40
Rhodanobacter denitrificans MT42 0.33 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 LRK55_RS05605 4-hydroxyphenylpyruvate dioxygenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 LRK54_RS05850 4-hydroxyphenylpyruvate dioxygenase low > 59
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.50 ABZR86_RS18470 4-hydroxyphenylpyruvate dioxygenase low > 74
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 OKGIIK_00780 hppD 4-hydroxyphenylpyruvate dioxygenase low > 52
Lysobacter sp. OAE881 0.32 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 ABIE51_RS04075 4-hydroxyphenylpyruvate dioxygenase low > 62
Acinetobacter radioresistens SK82 0.29 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 MPMX26_01476 4-hydroxyphenylpyruvate dioxygenase — —
Pseudomonas sp. S08-1 0.27 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.50 OH686_21080 4-hydroxyphenylpyruvate dioxygenase low > 80
Pseudomonas stutzeri RCH2 0.27 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.50 Psest_3514 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.23 28
Dickeya dadantii 3937 0.26 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 DDA3937_RS21335 4-hydroxyphenylpyruvate dioxygenase low > 74
Shewanella loihica PV-4 0.26 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.39 Shew_2155 4-hydroxyphenylpyruvate dioxygenase (RefSeq) low > 60
Dickeya dianthicola ME23 0.25 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 DZA65_RS22650 4-hydroxyphenylpyruvate dioxygenase low > 75
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.52 Pf1N1B4_5003 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) low > 87
Dickeya dianthicola 67-19 0.24 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 HGI48_RS21665 4-hydroxyphenylpyruvate dioxygenase low > 71
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_19055 23S rRNA methyltransferase 0.53 AO356_22845 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 104
Shewanella sp. ANA-3 0.24 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.39 Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.51 CSW01_06775 4-hydroxyphenylpyruvate dioxygenase low > 62
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_02715 23S rRNA methyltransferase 0.52 AO353_26925 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 101
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.53 Pf6N2E2_456 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 103
Pseudomonas sp. RS175 0.24 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 PFR28_02475 4-hydroxyphenylpyruvate dioxygenase low > 88
Shewanella oneidensis MR-1 0.24 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.39 SO1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 76
Shewanella amazonensis SB2B 0.24 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.39 Sama_1568 4-hydroxyphenylpyruvate dioxygenase (RefSeq) low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.52 Psyr_3330 4-hydroxyphenylpyruvate dioxygenase low > 86
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.52 Psyr_3330 4-hydroxyphenylpyruvate dioxygenase low > 86
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 PFLU_RS14610 4-hydroxyphenylpyruvate dioxygenase low > 109
Pseudomonas putida KT2440 0.23 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 PP_3433 4-hydroxyphenylpyruvate dioxygenase low > 96
Pseudomonas fluorescens SBW25 0.23 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 PFLU_RS14610 4-hydroxyphenylpyruvate dioxygenase low > 109
Pseudomonas simiae WCS417 0.23 PS417_20155 23S rRNA methyltransferase 0.53 PS417_14005 4-hydroxyphenylpyruvate dioxygenase low > 88
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.52 PfGW456L13_2935 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 87
Alteromonas macleodii MIT1002 0.20 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 MIT1002_01553 4-hydroxyphenylpyruvate dioxygenase low > 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.24 CA264_09345 4-hydroxyphenylpyruvate dioxygenase low > 74
Sinorhizobium meliloti 1021 0.13 SMc00974 RNA methyltransferase 0.47 SMc03211 4-hydroxyphenylpyruvate dioxygenase low > 103
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 ABZR88_RS04245 4-hydroxyphenylpyruvate dioxygenase low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.12 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.22 Echvi_2983 4-hydroxyphenylpyruvate dioxygenase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.12 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.19 CA265_RS03130 4-hydroxyphenylpyruvate dioxygenase low > 88
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.48 CCNA_02616 4-hydroxyphenylpyruvate dioxygenase low > 67
Caulobacter crescentus NA1000 0.11 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.48 CCNA_02616 4-hydroxyphenylpyruvate dioxygenase low > 66
Azospirillum sp. SherDot2 0.10 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.60 MPMX19_05634 4-hydroxyphenylpyruvate dioxygenase low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.43 A4249_RS11200 4-hydroxyphenylpyruvate dioxygenase low > 48
Rhodopseudomonas palustris CGA009 0.08 TX73_004885 methyltransferase 0.54 TX73_000025 4-hydroxyphenylpyruvate dioxygenase low > 86

Not shown: 41 genomes with orthologs for GFF3883 only; 4 genomes with orthologs for GFF1741 only