Conservation of cofitness between PGA1_c20570 and PGA1_c15960 in Phaeobacter inhibens DSM 17395

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 1.0 PGA1_c15960 Predicted ATPase 0.32 12
Dinoroseobacter shibae DFL-12 0.80 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.67 Dshi_1614 protein of unknown function DUF853 NPT hydrolase putative (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.64 CCNA_01659 queuine tRNA-ribosyltransferase 0.47 CCNA_00088 HerA helicase-related ATPase low > 67
Caulobacter crescentus NA1000 0.64 CCNA_01659 queuine tRNA-ribosyltransferase 0.47 CCNA_00088 HerA helicase-related ATPase low > 66
Rhizobium sp. OAE497 0.63 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.54 ABIE40_RS22125 helicase HerA-like C-terminal domain-containing protein low > 107
Sinorhizobium meliloti 1021 0.62 SMc01206 queuine tRNA-ribosyltransferase 0.54 SMc00100 hypothetical protein low > 103
Bosea sp. OAE506 0.62 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.48 ABIE41_RS21605 helicase HerA-like domain-containing protein low > 77
Agrobacterium fabrum C58 0.62 Atu1677 queuine tRNA-ribosyltransferase 0.54 Atu0860 hypothetical protein low > 89
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.49 A4249_RS14745 DUF853 family protein low > 48
Rhodopseudomonas palustris CGA009 0.56 TX73_013485 tRNA guanosine(34) transglycosylase Tgt 0.51 TX73_009475 DUF853 family protein low > 86
Shewanella sp. ANA-3 0.55 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.45 Shewana3_0459 protein of unknown function DUF853, NPT hydrolase putative (RefSeq) low > 73
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.41 PfGW456L13_1831 ATPase component BioM of energizing module of biotin ECF transporter low > 87
Shewanella oneidensis MR-1 0.55 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.44 SO0459 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas fluorescens SBW25 0.55 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.40 PFLU_RS24190 DUF853 family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.39 Pf1N1B4_659 ATPase component BioM of energizing module of biotin ECF transporter low > 87
Pseudomonas simiae WCS417 0.55 PS417_23245 queuine tRNA-ribosyltransferase 0.40 PS417_22550 ATP-binding protein — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.40 PFLU_RS24190 DUF853 family protein low > 109
Pseudomonas sp. RS175 0.55 PFR28_00277 Queuine tRNA-ribosyltransferase 0.40 PFR28_03433 hypothetical protein low > 88
Shewanella amazonensis SB2B 0.54 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.47 Sama_2524 protein of unknown function DUF853, NPT hydrolase putative (RefSeq) low > 62
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_06690 queuine tRNA-ribosyltransferase 0.41 AO356_17915 ATP-binding protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.42 Pf6N2E2_5513 ATPase component BioM of energizing module of biotin ECF transporter low > 103
Pseudomonas putida KT2440 0.54 PP_0833 queuine tRNA-ribosyltransferase 0.41 PP_1372 conserved protein of unknown function low > 96
Pseudomonas stutzeri RCH2 0.54 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.39 Psest_3176 Predicted ATPase low > 67
Kangiella aquimarina DSM 16071 0.54 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.51 B158DRAFT_0362 Predicted ATPase low > 40
Pseudomonas sp. S08-1 0.53 OH686_17430 tRNA-guanine transglycosylase 0.40 OH686_18310 Uncharacterized protein YjgR low > 80
Rahnella sp. WP5 0.53 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.47 EX31_RS04655 DUF853 domain-containing protein low > 89
Serratia liquefaciens MT49 0.53 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.46 IAI46_23600 DUF853 family protein low > 86
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.51 HSERO_RS17745 hypothetical protein low > 78
Castellaniella sp019104865 MT123 0.52 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.50 ABCV34_RS06665 helicase HerA-like C-terminal domain-containing protein low > 48
Dechlorosoma suillum PS 0.52 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.50 Dsui_0490 putative ATPase low > 51
Enterobacter sp. TBS_079 0.52 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.47 MPMX20_04124 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.47 EX28DRAFT_3273 Predicted ATPase low > 76
Rhodanobacter denitrificans MT42 0.52 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.46 LRK55_RS01535 DUF853 family protein low > 63
Klebsiella michiganensis M5al 0.52 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.48 BWI76_RS03060 ATP-binding protein — —
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.45 ABZR86_RS08070 helicase HerA-like domain-containing protein low > 74
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.46 LRK54_RS01755 DUF853 family protein low > 59
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 OKGIIK_04775 herA ATP-binding protein low > 52
Lysobacter sp. OAE881 0.51 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.47 ABIE51_RS08185 helicase HerA-like domain-containing protein low > 62
Pantoea sp. MT58 0.51 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.47 IAI47_16720 DUF853 domain-containing protein low > 76
Escherichia coli ECRC98 0.51 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 JDDGAC_15415 yjgR Uncharacterized protein YjgR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.47 OHPLBJKB_03773 hypothetical protein low > 73
Escherichia coli ECRC62 0.51 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 BNILDI_07475 yjgR Uncharacterized protein YjgR — —
Escherichia coli BL21 0.51 ECD_00354 tRNA-guanine transglycosylase 0.47 ECD_04129 DUF853 family protein with NTPase fold low > 60
Escherichia coli ECOR27 0.51 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 NOLOHH_04040 yjgR Uncharacterized protein YjgR low > 57
Escherichia coli ECRC101 0.51 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 OKFHMN_11775 yjgR Uncharacterized protein YjgR — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.48 ECOLIN_RS24710 helicase HerA-like C-terminal domain-containing protein — —
Escherichia coli ECRC99 0.51 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 KEDOAH_16380 yjgR Uncharacterized protein YjgR — —
Escherichia coli ECRC102 0.51 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 NIAGMN_09625 yjgR Uncharacterized protein YjgR — —
Escherichia coli ECRC101 0.51 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 MCAODC_02280 yjgR Uncharacterized protein YjgR — —
Escherichia coli BW25113 0.51 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.47 b4263 yjgR predicted ATPase (NCBI) low > 76
Escherichia fergusonii Becca 0.51 EFB2_03651 Queuine tRNA-ribosyltransferase 0.47 EFB2_04272 hypothetical protein low > 86
Escherichia coli ECOR38 0.51 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 HEPCGN_09965 yjgR Uncharacterized protein YjgR low > 85
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17400 queuine tRNA-ribosyltransferase 0.51 RR42_RS04740 ATP-binding protein low > 128
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.46 Xcc-8004.1948.1 ATPase component BioM of energizing module of biotin ECF transporter low > 74
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.52 ABZR87_RS15400 helicase HerA-like C-terminal domain-containing protein low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.50 GFF4522 ATPase component BioM of energizing module of biotin ECF transporter low > 90
Acidovorax sp. GW101-3H11 0.47 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.47 Ac3H11_2424 ATPase component BioM of energizing module of biotin ECF transporter low > 79
Variovorax sp. SCN45 0.47 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.48 GFF318 Uncharacterized protein YjgR low > 127
Variovorax sp. OAS795 0.47 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.49 ABID97_RS16815 helicase HerA-like domain-containing protein low > 91
Ralstonia solanacearum PSI07 0.46 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.50 RPSI07_RS13690 DUF853 domain-containing protein low > 81
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.38 Echvi_3334 Predicted ATPase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.38 CA265_RS16720 ATPase low > 88

Not shown: 38 genomes with orthologs for PGA1_c20570 only; 1 genomes with orthologs for PGA1_c15960 only