Conservation of cofitness between EX31_RS14255 and EX31_RS07565 in Rahnella sp. WP5

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS14255 ribonuclease E activity regulator RraA 1.0 EX31_RS07565 polyphenol oxidase 0.55 1
Serratia liquefaciens MT49 0.95 IAI46_24585 ribonuclease E activity regulator RraA 0.63 IAI46_03990 polyphenol oxidase low > 86
Pectobacterium carotovorum WPP14 0.93 HER17_RS00840 ribonuclease E activity regulator RraA 0.66 HER17_RS05405 polyphenol oxidase low > 75
Erwinia tracheiphila SCR3 0.93 LU632_RS19685 rraA ribonuclease E activity regulator RraA 0.57 LU632_RS16940 pgeF polyphenol oxidase low > 74
Escherichia coli ECRC101 0.93 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.63 MCAODC_11785 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia coli ECOR27 0.93 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.63 NOLOHH_12930 yfiH purine nucleoside phosphorylase YfiH low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.62 OHPLBJKB_01113 Polyphenol oxidase 0.42 36
Escherichia coli ECOR38 0.93 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.63 HEPCGN_20380 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia coli BW25113 0.93 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.64 b2593 yfiH hypothetical protein (NCBI) low > 76
Escherichia coli ECRC102 0.93 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.63 NIAGMN_19025 yfiH purine nucleoside phosphorylase YfiH — —
Escherichia coli ECRC99 0.93 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.63 KEDOAH_06965 yfiH purine nucleoside phosphorylase YfiH — —
Escherichia coli ECRC62 0.93 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.63 BNILDI_11735 yfiH purine nucleoside phosphorylase YfiH low > 75
Escherichia coli ECRC100 0.93 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.63 OKFHMN_21255 yfiH purine nucleoside phosphorylase YfiH low > 80
Escherichia coli BL21 0.93 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.62 ECD_02483 UPF0124 family protein low > 61
Escherichia coli ECRC98 0.93 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.63 JDDGAC_24920 yfiH purine nucleoside phosphorylase YfiH low > 86
Escherichia fergusonii Becca 0.93 EFB2_04689 Regulator of ribonuclease activity A 0.63 EFB2_01297 Polyphenol oxidase low > 86
Escherichia coli Nissle 1917 0.93 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.64 ECOLIN_RS14670 purine nucleoside phosphorylase YfiH low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF2311 Ribonuclease E inhibitor RraA 0.63 GFF4183 COG1496: Uncharacterized conserved protein low > 78
Enterobacter sp. TBS_079 0.91 MPMX20_04540 Regulator of ribonuclease activity A 0.59 MPMX20_03462 Polyphenol oxidase low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS00740 ribonuclease E activity regulator RraA 0.60 BWI76_RS21445 hypothetical protein low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_4402 regulator of ribonuclease activity A 0.59 EX28DRAFT_2694 YfiH family protein low > 76
Dickeya dianthicola 67-19 0.86 HGI48_RS20470 ribonuclease E activity regulator RraA 0.63 HGI48_RS16230 polyphenol oxidase low > 71
Dickeya dianthicola ME23 0.85 DZA65_RS21515 ribonuclease E activity regulator RraA 0.62 DZA65_RS17325 polyphenol oxidase low > 75
Dickeya dadantii 3937 0.85 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.63 DDA3937_RS16105 polyphenol oxidase low > 74
Pantoea sp. MT58 0.82 IAI47_00840 ribonuclease E activity regulator RraA 0.62 IAI47_04430 polyphenol oxidase low > 76
Shewanella oneidensis MR-1 0.73 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) 0.49 SO3578 conserved hypothetical protein TIGR00726 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.72 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) 0.48 Shewana3_3170 hypothetical protein (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_13500 ribonuclease E activity regulator RraA 0.42 CSW01_03700 multi-copper polyphenol oxidoreductase low > 62
Shewanella amazonensis SB2B 0.71 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) 0.51 Sama_2604 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.70 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) 0.45 Shew_2949 hypothetical protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_00164 Regulator of ribonuclease activity A 0.33 MIT1002_02678 Laccase domain protein YfiH low > 70
Pseudomonas stutzeri RCH2 0.58 Psest_2315 RraA famliy 0.48 Psest_0710 uncharacterized protein, YfiH family — —
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00850 ribonuclease activity regulator protein RraA 0.52 AO353_14225 laccase low > 101
Pseudomonas sp. S08-1 0.57 OH686_01650 Ribonuclease E inhibitor RraA 0.51 OH686_16415 Multicopper polyphenol oxidase low > 80
Pseudomonas putida KT2440 0.57 PP_2084 Putative regulator of ribonuclease activity 0.51 PP_0624 Uncharacterized protein YfiH low > 96
Pseudomonas sp. RS175 0.57 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.53 PFR28_03747 Polyphenol oxidase low > 88
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.51 Pf6N2E2_5128 COG1496: Uncharacterized conserved protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_02815 ribonuclease activity regulator protein RraA 0.53 AO356_15930 laccase low > 104
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.52 Pf1N1B4_2823 COG1496: Uncharacterized conserved protein low > 87
Pseudomonas simiae WCS417 0.56 PS417_21010 ribonuclease activity regulator protein RraA 0.52 PS417_03825 laccase low > 88
Pseudomonas fluorescens SBW25 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.52 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_2092 Protein of unknown function 1935 0.52 Psyr_0727 Protein of unknown function DUF152 low > 86
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.52 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_2092 Protein of unknown function 1935 0.52 Psyr_0727 Protein of unknown function DUF152 low > 86
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.52 PfGW456L13_1494 COG1496: Uncharacterized conserved protein low > 87
Acinetobacter radioresistens SK82 0.49 MPMX26_01316 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.28 MPMX26_00736 Polyphenol oxidase low > 36
Marinobacter adhaerens HP15 0.48 HP15_2228 ribonuclease activity regulator protein RraA 0.51 HP15_528 multi-copper polyphenol oxidoreductase, laccase low > 73
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA 0.43 Xcc-8004.1363.1 COG1496: Uncharacterized conserved protein — —
Dechlorosoma suillum PS 0.43 Dsui_0010 RraA family protein 0.53 Dsui_2531 uncharacterized protein, YfiH family low > 51
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS06240 ribonuclease E activity regulator RraA 0.43 QEN71_RS22210 peptidoglycan editing factor PgeF 0.30 118
Lysobacter sp. OAE881 0.42 ABIE51_RS04140 ribonuclease E activity regulator RraA 0.45 ABIE51_RS04890 peptidoglycan editing factor PgeF — —
Azospirillum brasilense Sp245 0.41 AZOBR_RS17130 ribonuclease 0.20 AZOBR_RS31175 polyphenol oxidase — —
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2834 Ribonuclease E inhibitor RraA 0.39 Ac3H11_2305 COG1496: Uncharacterized conserved protein low > 79
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11580 ribonuclease E activity regulator RraA 0.38 ABZR87_RS13310 peptidoglycan editing factor PgeF low > 80
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS10555 ribonuclease 0.44 HSERO_RS15065 laccase low > 78
Ralstonia solanacearum PSI07 0.40 RPSI07_RS17355 ribonuclease E inhibitor RraA 0.40 RPSI07_RS15975 peptidoglycan editing factor PgeF low > 81
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS00130 ribonuclease 0.39 RALBFv3_RS01515 peptidoglycan editing factor PgeF low > 76
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.44 GFF807 FIG00003370: Multicopper polyphenol oxidase — —
Ralstonia solanacearum UW163 0.39 UW163_RS13460 ribonuclease 0.39 UW163_RS14825 peptidoglycan editing factor PgeF — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12315 ribonuclease 0.43 BPHYT_RS09140 laccase — —
Azospirillum sp. SherDot2 0.39 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.21 MPMX19_01826 Polyphenol oxidase low > 112
Mycobacterium tuberculosis H37Rv 0.39 Rv3853 Regulator of RNase E activity a RraA 0.21 Rv2149c Conserved protein YfiH low > 58
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS12215 ribonuclease 0.49 RR42_RS07595 hypothetical protein low > 128
Ralstonia solanacearum GMI1000 0.37 RS_RS06790 ribonuclease E inhibitor RraA 0.41 RS_RS08210 peptidoglycan editing factor PgeF low > 80

Not shown: 0 genomes with orthologs for EX31_RS14255 only; 31 genomes with orthologs for EX31_RS07565 only