Conservation of cofitness between EX31_RS07565 and EX31_RS04585 in Rahnella sp. WP5

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS07565 polyphenol oxidase 1.0 EX31_RS04585 hydroxypyruvate isomerase 0.49 19
Pectobacterium carotovorum WPP14 0.66 HER17_RS05405 polyphenol oxidase 0.43 HER17_RS00550 hydroxypyruvate isomerase family protein low > 75
Escherichia coli BW25113 0.64 b2593 yfiH hypothetical protein (NCBI) 0.74 b0508 hyi hydroxypyruvate isomerase (NCBI) low > 76
Escherichia coli Nissle 1917 0.64 ECOLIN_RS14670 purine nucleoside phosphorylase YfiH 0.74 ECOLIN_RS02960 hydroxypyruvate isomerase low > 55
Escherichia coli ECOR38 0.63 HEPCGN_20380 yfiH purine nucleoside phosphorylase YfiH 0.74 HEPCGN_06555 hyi hydroxypyruvate isomerase low > 87
Serratia liquefaciens MT49 0.63 IAI46_03990 polyphenol oxidase 0.42 IAI46_07590 HPr family phosphocarrier protein low > 86
Escherichia fergusonii Becca 0.63 EFB2_01297 Polyphenol oxidase 0.74 EFB2_03553 Hydroxypyruvate isomerase low > 86
Escherichia coli ECOR27 0.63 NOLOHH_12930 yfiH purine nucleoside phosphorylase YfiH 0.74 NOLOHH_00900 hyi hydroxypyruvate isomerase low > 75
Dickeya dadantii 3937 0.63 DDA3937_RS16105 polyphenol oxidase 0.13 DDA3937_RS15305 TIM barrel protein low > 74
Escherichia coli ECRC62 0.63 BNILDI_11735 yfiH purine nucleoside phosphorylase YfiH 0.74 BNILDI_22330 hyi hydroxypyruvate isomerase low > 75
Escherichia coli ECRC102 0.63 NIAGMN_19025 yfiH purine nucleoside phosphorylase YfiH 0.74 NIAGMN_05970 hyi hydroxypyruvate isomerase — —
Escherichia coli ECRC98 0.63 JDDGAC_24920 yfiH purine nucleoside phosphorylase YfiH 0.74 JDDGAC_11565 hyi hydroxypyruvate isomerase — —
Escherichia coli ECRC99 0.63 KEDOAH_06965 yfiH purine nucleoside phosphorylase YfiH 0.74 KEDOAH_20050 hyi hydroxypyruvate isomerase — —
Escherichia coli ECRC101 0.63 MCAODC_11785 yfiH purine nucleoside phosphorylase YfiH 0.74 MCAODC_27135 hyi hydroxypyruvate isomerase low > 87
Escherichia coli ECRC100 0.63 OKFHMN_21255 yfiH purine nucleoside phosphorylase YfiH 0.74 OKFHMN_07920 hyi hydroxypyruvate isomerase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF4183 COG1496: Uncharacterized conserved protein 0.74 GFF4424 Hydroxypyruvate isomerase (EC 5.3.1.22) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_01113 Polyphenol oxidase 0.74 OHPLBJKB_03172 Hydroxypyruvate isomerase low > 73
Escherichia coli BL21 0.62 ECD_02483 UPF0124 family protein 0.74 ECD_00458 hydroxypyruvate isomerase — —
Pantoea sp. MT58 0.62 IAI47_04430 polyphenol oxidase 0.39 IAI47_07155 HPr family phosphocarrier protein low > 76
Klebsiella michiganensis M5al 0.60 BWI76_RS21445 hypothetical protein 0.72 BWI76_RS06995 hydroxypyruvate isomerase low > 92
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_15930 laccase 0.58 AO356_19615 hydroxypyruvate isomerase low > 104
Pseudomonas sp. RS175 0.53 PFR28_03747 Polyphenol oxidase 0.58 PFR28_03111 Hydroxypyruvate isomerase low > 88
Dechlorosoma suillum PS 0.53 Dsui_2531 uncharacterized protein, YfiH family 0.47 Dsui_3423 hydroxypyruvate isomerase low > 51
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_14225 laccase 0.58 AO353_01925 hydroxypyruvate isomerase low > 101
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_1494 COG1496: Uncharacterized conserved protein 0.58 PfGW456L13_4296 Hydroxypyruvate isomerase (EC 5.3.1.22) low > 87
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS03875 peptidoglycan editing factor PgeF 0.58 PFLU_RS08865 hydroxypyruvate isomerase low > 109
Pseudomonas fluorescens SBW25 0.52 PFLU_RS03875 peptidoglycan editing factor PgeF 0.58 PFLU_RS08865 hydroxypyruvate isomerase low > 109
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_2823 COG1496: Uncharacterized conserved protein 0.58 Pf1N1B4_3660 Hydroxypyruvate isomerase (EC 5.3.1.22) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_0727 Protein of unknown function DUF152 0.46 Psyr_0462 Hydroxypyruvate isomerase low > 86
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_0727 Protein of unknown function DUF152 0.46 Psyr_0462 Hydroxypyruvate isomerase low > 86
Pseudomonas simiae WCS417 0.52 PS417_03825 laccase 0.57 PS417_08805 hydroxypyruvate isomerase low > 88
Pseudomonas putida KT2440 0.51 PP_0624 Uncharacterized protein YfiH 0.57 PP_4298 hydroxypyruvate isomerase low > 96
Pseudomonas sp. S08-1 0.51 OH686_16415 Multicopper polyphenol oxidase 0.33 OH686_20930 Hydroxypyruvate isomerase low > 80
Marinobacter adhaerens HP15 0.51 HP15_528 multi-copper polyphenol oxidoreductase, laccase 0.49 HP15_3485 hydroxypyruvate isomerase low > 73
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_5128 COG1496: Uncharacterized conserved protein 0.58 Pf6N2E2_5838 Hydroxypyruvate isomerase (EC 5.3.1.22) low > 103
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS07595 hypothetical protein 0.58 RR42_RS19855 hydroxypyruvate isomerase low > 128
Pseudomonas stutzeri RCH2 0.48 Psest_0710 uncharacterized protein, YfiH family 0.57 Psest_1180 hydroxypyruvate isomerase — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS15065 laccase 0.47 HSERO_RS21140 hydroxypyruvate isomerase low > 78
Variovorax sp. SCN45 0.44 GFF807 FIG00003370: Multicopper polyphenol oxidase 0.60 GFF1799 Hydroxypyruvate isomerase (EC 5.3.1.22) low > 127
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS22210 peptidoglycan editing factor PgeF 0.57 QEN71_RS22540 hydroxypyruvate isomerase low > 153
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS09140 laccase 0.58 BPHYT_RS08830 hydroxypyruvate isomerase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4798 COG1496: Uncharacterized conserved protein 0.55 GFF138 Hydroxypyruvate isomerase (EC 5.3.1.22) — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_00849 conserved hypothetical protein 0.57 H281DRAFT_00786 hydroxypyruvate isomerase low > 103
Ralstonia solanacearum GMI1000 0.41 RS_RS08210 peptidoglycan editing factor PgeF 0.60 RS_RS16445 hydroxypyruvate isomerase low > 80
Variovorax sp. OAS795 0.41 ABID97_RS12405 peptidoglycan editing factor PgeF 0.61 ABID97_RS22325 hydroxypyruvate isomerase low > 91
Paraburkholderia graminis OAS925 0.41 ABIE53_002063 YfiH family protein 0.58 ABIE53_001999 hydroxypyruvate isomerase low > 113
Ralstonia solanacearum PSI07 0.40 RPSI07_RS15975 peptidoglycan editing factor PgeF 0.60 RPSI07_RS08645 hydroxypyruvate isomerase low > 81
Acidovorax sp. GW101-3H11 0.39 Ac3H11_2305 COG1496: Uncharacterized conserved protein 0.61 Ac3H11_1087 Hydroxypyruvate isomerase (EC 5.3.1.22) low > 79
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS01515 peptidoglycan editing factor PgeF 0.60 RALBFv3_RS08580 hydroxypyruvate isomerase low > 76
Ralstonia solanacearum UW163 0.39 UW163_RS14825 peptidoglycan editing factor PgeF 0.60 UW163_RS05030 hydroxypyruvate isomerase — —
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS13310 peptidoglycan editing factor PgeF 0.59 ABZR87_RS03890 hydroxypyruvate isomerase low > 80
Castellaniella sp019104865 MT123 0.34 ABCV34_RS01890 peptidoglycan editing factor PgeF 0.62 ABCV34_RS12135 hydroxypyruvate isomerase low > 48
Acinetobacter radioresistens SK82 0.28 MPMX26_00736 Polyphenol oxidase 0.35 MPMX26_00532 Hydroxypyruvate isomerase low > 36
Dinoroseobacter shibae DFL-12 0.25 Dshi_2651 protein of unknown function DUF152 (RefSeq) 0.34 Dshi_1554 Hydroxypyruvate isomerase (RefSeq) low > 64
Rhizobium sp. OAE497 0.24 ABIE40_RS13030 peptidoglycan editing factor PgeF 0.57 ABIE40_RS25205 hydroxypyruvate isomerase low > 107
Rhodospirillum rubrum S1H 0.24 Rru_A0643 Protein of unknown function DUF152 (NCBI) 0.41 Rru_A2503 Hydroxypyruvate isomerase (NCBI) low > 58
Sinorhizobium meliloti 1021 0.24 SMc02683 hypothetical protein 0.57 SM_b20680 hydroxypyruvate isomerase low > 103
Phaeobacter inhibens DSM 17395 0.23 PGA1_c24750 uncharacterized protein, YfiH family 0.29 PGA1_c31800 protein YgbM low > 62
Rhodopseudomonas palustris CGA009 0.23 TX73_022600 peptidoglycan editing factor PgeF 0.38 TX73_009015 hydroxypyruvate isomerase family protein low > 86
Bosea sp. OAE506 0.22 ABIE41_RS11450 peptidoglycan editing factor PgeF 0.42 ABIE41_RS11085 2-oxo-tetronate isomerase low > 77
Azospirillum sp. SherDot2 0.21 MPMX19_01826 Polyphenol oxidase 0.56 MPMX19_05812 Hydroxypyruvate isomerase low > 112
Azospirillum brasilense Sp245 0.20 AZOBR_RS31175 polyphenol oxidase 0.59 AZOBR_RS07960 hydroxypyruvate isomerase low > 97
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_2317 protein of unknown function DUF152 (RefSeq) 0.52 DvMF_2929 hydroxypyruvate isomerase (RefSeq) low > 51

Not shown: 32 genomes with orthologs for EX31_RS07565 only; 0 genomes with orthologs for EX31_RS04585 only